Tpd52l2 (TPD52 like 2) - Rat Genome Database

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Gene: Tpd52l2 (TPD52 like 2) Rattus norvegicus
Analyze
Symbol: Tpd52l2
Name: TPD52 like 2
RGD ID: 735167
Description: Predicted to enable protein homodimerization activity. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Orthologous to human TPD52L2 (TPD52 like 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC73020; tumor protein D52-like 2; tumor protein D54
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23168,598,449 - 168,618,201 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3168,594,609 - 168,619,762 (+)Ensembl
Rnor_6.03176,989,333 - 177,009,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,989,672 - 177,008,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,699,955 - 180,719,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,631,625 - 170,650,377 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13170,537,663 - 170,556,408 (+)NCBI
Celera3163,969,768 - 163,988,599 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO,ISS)
perinuclear region of cytoplasm  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system. Byrne JA, etal., Oncogene 1998 Feb 19;16(7):873-81.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11748220   PMID:15489334   PMID:16112108   PMID:22658674   PMID:25002582  


Genomics

Comparative Map Data
Tpd52l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23168,598,449 - 168,618,201 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3168,594,609 - 168,619,762 (+)Ensembl
Rnor_6.03176,989,333 - 177,009,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,989,672 - 177,008,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,699,955 - 180,719,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,631,625 - 170,650,377 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13170,537,663 - 170,556,408 (+)NCBI
Celera3163,969,768 - 163,988,599 (-)NCBICelera
Cytogenetic Map3q43NCBI
TPD52L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,865,270 - 63,891,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2063,865,228 - 63,891,545 (+)EnsemblGRCh38hg38GRCh38
GRCh372062,496,623 - 62,522,891 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,967,034 - 61,993,335 (+)NCBINCBI36hg18NCBI36
Build 342061,967,033 - 61,993,332NCBI
Celera2059,180,773 - 59,206,754 (+)NCBI
Cytogenetic Map20q13.33NCBI
HuRef2059,229,204 - 59,255,318 (+)NCBIHuRef
CHM1_12062,397,395 - 62,423,712 (+)NCBICHM1_1
T2T-CHM13v2.02065,685,113 - 65,711,383 (+)NCBI
Tpd52l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,138,935 - 181,159,755 (+)NCBIGRCm39mm39
GRCm39 Ensembl2181,138,935 - 181,159,759 (+)Ensembl
GRCm382181,497,142 - 181,517,962 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,497,142 - 181,517,966 (+)EnsemblGRCm38mm10GRCm38
MGSCv372181,231,958 - 181,251,462 (+)NCBIGRCm37mm9NCBIm37
MGSCv362181,426,660 - 181,446,164 (+)NCBImm8
Celera2185,578,690 - 185,598,201 (+)NCBICelera
Cytogenetic Map2H4NCBI
Tpd52l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528371,761 - 389,705 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528371,761 - 389,714 (-)NCBIChiLan1.0ChiLan1.0
TPD52L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12061,787,181 - 61,810,359 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,787,310 - 61,808,876 (+)Ensemblpanpan1.1panPan2
TPD52L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,353,523 - 47,369,507 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,353,573 - 47,369,356 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,484,802 - 46,503,166 (+)NCBI
ROS_Cfam_1.02448,489,740 - 48,508,262 (+)NCBI
ROS_Cfam_1.0 Ensembl2448,489,755 - 48,509,480 (+)Ensembl
UMICH_Zoey_3.12447,334,489 - 47,352,851 (+)NCBI
UNSW_CanFamBas_1.02447,459,489 - 47,477,706 (+)NCBI
UU_Cfam_GSD_1.02448,197,759 - 48,216,026 (+)NCBI
Tpd52l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,618,502 - 195,638,809 (+)NCBI
SpeTri2.0NW_00493651411,072,148 - 11,092,454 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPD52L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,733,593 - 62,750,557 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,733,555 - 62,750,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TPD52L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,782 - 359,474 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2342,247 - 359,295 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605047,878,015 - 47,905,504 (-)NCBIVero_WHO_p1.0
Tpd52l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,492,288 - 29,509,952 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474129,492,109 - 29,511,410 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BE108673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23168,607,986 - 168,608,171 (+)MAPPERmRatBN7.2
Rnor_6.03176,999,210 - 176,999,394NCBIRnor6.0
Rnor_5.03180,709,493 - 180,709,677UniSTSRnor5.0
RGSC_v3.43170,641,163 - 170,641,347UniSTSRGSC3.4
Celera3163,978,877 - 163,979,061UniSTS
RH 3.4 Map31554.1UniSTS
Cytogenetic Map3q43UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:153
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000020373
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_198744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF329826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020210   ⟹   ENSRNOP00000020210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,594,609 - 168,619,762 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000020373   ⟹   ENSRNOP00000020374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3176,989,672 - 177,008,419 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100247   ⟹   ENSRNOP00000082032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,594,761 - 168,619,762 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114404   ⟹   ENSRNOP00000084244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,594,761 - 168,619,762 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114740   ⟹   ENSRNOP00000080130
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,594,761 - 168,619,762 (+)Ensembl
RefSeq Acc Id: NM_198744   ⟹   NP_942039
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,449 - 168,617,200 (+)NCBI
Rnor_6.03176,989,672 - 177,008,424 (+)NCBI
Rnor_5.03180,699,955 - 180,719,706 (+)NCBI
RGSC_v3.43170,631,625 - 170,650,377 (+)RGD
Celera3163,969,768 - 163,988,599 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235754   ⟹   XP_006235816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,459 - 168,618,201 (+)NCBI
Rnor_6.03176,989,674 - 177,009,425 (+)NCBI
Rnor_5.03180,699,955 - 180,719,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006235757   ⟹   XP_006235819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,457 - 168,618,201 (+)NCBI
Rnor_6.03176,989,671 - 177,009,425 (+)NCBI
Rnor_5.03180,699,955 - 180,719,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006235759   ⟹   XP_006235821
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,459 - 168,618,201 (+)NCBI
Rnor_6.03176,989,677 - 177,009,425 (+)NCBI
Rnor_5.03180,699,955 - 180,719,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006235760   ⟹   XP_006235822
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,458 - 168,618,201 (+)NCBI
Rnor_6.03176,989,672 - 177,009,425 (+)NCBI
Rnor_5.03180,699,955 - 180,719,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006235761   ⟹   XP_006235823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,459 - 168,618,201 (+)NCBI
Rnor_6.03176,989,675 - 177,009,425 (+)NCBI
Rnor_5.03180,699,955 - 180,719,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762500   ⟹   XP_008760722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,458 - 168,618,201 (+)NCBI
Rnor_6.03176,989,672 - 177,009,425 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591622   ⟹   XP_017447111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,458 - 168,609,786 (+)NCBI
Rnor_6.03176,989,672 - 177,001,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591623   ⟹   XP_017447112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,452 - 168,614,552 (+)NCBI
Rnor_6.03176,989,333 - 177,005,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104697   ⟹   XP_038960625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,459 - 168,618,201 (+)NCBI
RefSeq Acc Id: XM_039104698   ⟹   XP_038960626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,459 - 168,618,201 (+)NCBI
RefSeq Acc Id: XM_039104699   ⟹   XP_038960627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,457 - 168,618,201 (+)NCBI
RefSeq Acc Id: XM_039104700   ⟹   XP_038960628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,456 - 168,618,201 (+)NCBI
RefSeq Acc Id: XM_039104701   ⟹   XP_038960629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,458 - 168,618,201 (+)NCBI
RefSeq Acc Id: XM_039104702   ⟹   XP_038960630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,458 - 168,618,201 (+)NCBI
RefSeq Acc Id: XM_039104703   ⟹   XP_038960631
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,598,461 - 168,618,201 (+)NCBI
Protein Sequences
Protein RefSeqs NP_942039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235816 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235819 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235821 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235822 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235823 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760722 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447111 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960631 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH59167 (Get FASTA)   NCBI Sequence Viewer  
  EDL88708 (Get FASTA)   NCBI Sequence Viewer  
  EDL88709 (Get FASTA)   NCBI Sequence Viewer  
  EDL88710 (Get FASTA)   NCBI Sequence Viewer  
  EDL88711 (Get FASTA)   NCBI Sequence Viewer  
  EDL88712 (Get FASTA)   NCBI Sequence Viewer  
  EDL88713 (Get FASTA)   NCBI Sequence Viewer  
  EDL88714 (Get FASTA)   NCBI Sequence Viewer  
  EDL88715 (Get FASTA)   NCBI Sequence Viewer  
  EDL88716 (Get FASTA)   NCBI Sequence Viewer  
  Q6PCT3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_942039   ⟸   NM_198744
- UniProtKB: Q6PCT3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235819   ⟸   XM_006235757
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006235816   ⟸   XM_006235754
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006235822   ⟸   XM_006235760
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006235821   ⟸   XM_006235759
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006235823   ⟸   XM_006235761
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008760722   ⟸   XM_008762500
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017447112   ⟸   XM_017591623
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017447111   ⟸   XM_017591622
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: ENSRNOP00000020374   ⟸   ENSRNOT00000020373
RefSeq Acc Id: XP_038960628   ⟸   XM_039104700
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960627   ⟸   XM_039104699
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038960629   ⟸   XM_039104701
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038960630   ⟸   XM_039104702
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038960625   ⟸   XM_039104697
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960626   ⟸   XM_039104698
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960631   ⟸   XM_039104703
- Peptide Label: isoform X12
RefSeq Acc Id: ENSRNOP00000080130   ⟸   ENSRNOT00000114740
RefSeq Acc Id: ENSRNOP00000082032   ⟸   ENSRNOT00000100247
RefSeq Acc Id: ENSRNOP00000020210   ⟸   ENSRNOT00000020210
RefSeq Acc Id: ENSRNOP00000084244   ⟸   ENSRNOT00000114404

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PCT3-F1-model_v2 AlphaFold Q6PCT3 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692757
Promoter ID:EPDNEW_R3281
Type:initiation region
Name:Tpd52l2_1
Description:tumor protein D52-like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03176,989,718 - 176,989,778EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
3 180702573 180702574 G C snv SDLEF7/Barth (UDEL), DOB/Oda (KyushuU), NIG-III/Hok (KyushuU), Crl:SD (UDEL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735167 AgrOrtholog
BioCyc Gene G2FUF-46281 BioCyc
Ensembl Genes ENSRNOG00000015067 Ensembl
  ENSRNOG00000015122 Ensembl
IMAGE_CLONE IMAGE:6890828 IMAGE-MGC_LOAD
InterPro TPD52 UniProtKB/Swiss-Prot
KEGG Report rno:296480 UniProtKB/Swiss-Prot
MGC_CLONE MGC:73020 IMAGE-MGC_LOAD
NCBI Gene 296480 ENTREZGENE
PANTHER PTHR19307 UniProtKB/Swiss-Prot
Pfam TPD52 UniProtKB/Swiss-Prot
PhenoGen Tpd52l2 PhenoGen
UniProt Q6PCT3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-21 Tpd52l2  TPD52 like 2  Tpd52l2  tumor protein D52-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Tpd52l2  tumor protein D52-like 2      Symbol and Name status set to approved 1299863 APPROVED