Tpd52l2 (TPD52 like 2) - Rat Genome Database

Name: Tpd52l2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Tpd52l2 (TPD52 like 2) Rattus norvegicus

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Symbol:

Tpd52l2

Name:

TPD52 like 2

RGD ID:

735167

Description:

Predicted to enable protein homodimerization activity. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Orthologous to human TPD52L2 (TPD52 like 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC73020; tumor protein D52-like 2; tumor protein D54

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TPD52L2 (TPD52 like 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Tpd52l2 (tumor protein D52-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tpd52l2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TPD52L2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TPD52L2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tpd52l2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TPD52L2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TPD52L2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tpd52l2 (TPD52 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tpd52l2 (tumor protein D52-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TPD52L2 (TPD52 like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tpd52l2b (tpd52 like 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tpd52l2a (tpd52 like 2a)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	F13E6.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5174	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,972,321 - 188,995,721 (+)	NCBI		GRCr8
mRatBN7.2	3	168,598,449 - 168,618,201 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,594,609 - 168,619,762 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	172,978,764 - 172,997,530 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,937,859 - 181,956,625 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,599,374 - 178,618,131 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,989,333 - 177,009,425 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,989,672 - 177,008,419 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,631,625 - 170,650,377 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	170,537,663 - 170,556,408 (+)	NCBI
Celera	3	163,969,768 - 163,988,599 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nocturnal frontal lobe epilepsy (ISO)

benign familial infantile seizures 6 (ISO)

developmental and epileptic encephalopathy (ISO)

developmental and epileptic encephalopathy 33 (ISO)

early infantile epileptic encephalopathy (ISO)

neuronal ceroid lipofuscinosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-amino-14,16-dimethyloctadecan-3-ol (ISO)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-tert-Octylphenol (EXP)

acetylsalicylic acid (ISO)

acrylamide (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (EXP)

enzyme inhibitor (ISO)

fenthion (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

hexadecanoic acid (ISO)

indometacin (ISO)

isobutanol (ISO)

ivermectin (ISO)

lead(0) (ISO)

ozone (ISO)

p-tert-Amylphenol (EXP)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (ISO)

pirinixic acid (ISO)

pyrimidifen (ISO)

rotenone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

testosterone enanthate (ISO)

Tributyltin oxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,ISO,ISS)

perinuclear region of cytoplasm (ISO,ISS)

Molecular Function

protein binding (ISO)

protein homodimerization activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system.	Byrne JA, etal., Oncogene 1998 Feb 19;16(7):873-81.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11748220	PMID:15489334	PMID:16112108	PMID:22658674	PMID:25002582

Genomics

Comparative Map Data

Tpd52l2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,972,321 - 188,995,721 (+)	NCBI		GRCr8
mRatBN7.2	3	168,598,449 - 168,618,201 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,594,609 - 168,619,762 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	172,978,764 - 172,997,530 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,937,859 - 181,956,625 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,599,374 - 178,618,131 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,989,333 - 177,009,425 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,989,672 - 177,008,419 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,631,625 - 170,650,377 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	170,537,663 - 170,556,408 (+)	NCBI
Celera	3	163,969,768 - 163,988,599 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

TPD52L2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,865,270 - 63,891,538 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,865,228 - 63,891,545 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	62,496,623 - 62,522,891 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,967,034 - 61,993,335 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	61,967,033 - 61,993,332	NCBI
Celera	20	59,180,773 - 59,206,754 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	59,229,204 - 59,255,318 (+)	NCBI		HuRef
CHM1_1	20	62,397,395 - 62,423,712 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,685,113 - 65,711,383 (+)	NCBI		T2T-CHM13v2.0

Tpd52l2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	181,138,951 - 181,160,103 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	181,138,935 - 181,159,759 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	181,497,142 - 181,517,962 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,497,142 - 181,517,966 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	181,231,958 - 181,251,462 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,426,660 - 181,446,164 (+)	NCBI		MGSCv36	mm8
Celera	2	185,578,690 - 185,598,201 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.63	NCBI

Tpd52l2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	371,761 - 389,705 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955528	371,761 - 389,714 (-)	NCBI	ChiLan1.0	ChiLan1.0

TPD52L2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,673,268 - 69,702,075 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,666,703 - 69,694,085 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	61,787,181 - 61,810,359 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,787,310 - 61,808,876 (+)	Ensembl	panpan1.1		panPan2

TPD52L2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	47,353,523 - 47,369,507 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	47,353,573 - 47,369,356 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,484,802 - 46,503,166 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	48,489,740 - 48,508,262 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	48,489,755 - 48,509,480 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	47,334,489 - 47,352,851 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,459,489 - 47,477,706 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,197,759 - 48,216,026 (+)	NCBI		UU_Cfam_GSD_1.0

Tpd52l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,618,502 - 195,638,809 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	11,072,113 - 11,094,269 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	11,072,148 - 11,092,454 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPD52L2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,733,593 - 62,750,557 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,733,555 - 62,750,566 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TPD52L2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	343,782 - 359,474 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	342,247 - 359,295 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	47,878,015 - 47,905,504 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tpd52l2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	29,492,288 - 29,509,952 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	29,492,109 - 29,511,410 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tpd52l2
37 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	227
Count of miRNA genes:	153
Interacting mature miRNAs:	173
Transcripts:	ENSRNOT00000020373
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	161192952	169034231	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat

Markers in Region

BE108673

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,607,986 - 168,608,171 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	176,999,210 - 176,999,394	NCBI	Rnor6.0
Rnor_5.0	3	180,709,493 - 180,709,677	UniSTS	Rnor5.0
RGSC_v3.4	3	170,641,163 - 170,641,347	UniSTS	RGSC3.4
Celera	3	163,978,877 - 163,979,061	UniSTS
RH 3.4 Map	3	1554.1	UniSTS
Cytogenetic Map	3	q43	UniSTS

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_198744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF329826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020210 ⟹ ENSRNOP00000020210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,594,609 - 168,619,762 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000020373 ⟹ ENSRNOP00000020374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	176,989,672 - 177,008,419 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100247 ⟹ ENSRNOP00000082032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,594,761 - 168,619,762 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114404 ⟹ ENSRNOP00000084244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,594,761 - 168,619,762 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114740 ⟹ ENSRNOP00000080130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,594,761 - 168,619,762 (+)	Ensembl

RefSeq Acc Id:

NM_198744 ⟹ NP_942039

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,970 - 188,994,722 (+)	NCBI
mRatBN7.2	3	168,598,449 - 168,617,200 (+)	NCBI
Rnor_6.0	3	176,989,672 - 177,008,424 (+)	NCBI
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI
RGSC_v3.4	3	170,631,625 - 170,650,377 (+)	RGD
Celera	3	163,969,768 - 163,988,599 (-)	RGD

Sequence:

show sequence

GGGGGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACCA
AGCTGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGCC
AGCTACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGATATCAACCTGAATTCTCCT
AACAAAGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGACCCAGGTGTGGTCCACCGGA
CTCCAGCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGGT
GGAAGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCTG
AAACGGAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCATG
ATGTGCAGGGCTCTACTGCCTATGTGAAAACGTCTGAGAAACTTGGAGAGTGGAATGAGAAAGT
GACGCAGTCTGACCTCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAACATCA
GCTGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGCAGCTACTCCA
TCCGACACTCGATAAGTATGCCTGTCATGAGGAACTCTGCAACCTTCAAGTCATTTGAAGATCG
AGTGGGGACCATAAAGTCTAAGGTTGTGGGCGGCAGAGAGAATGGCAGCGATACCCTCCCTTCC
TCACCTGGAAGTGGTGACCAGACATTGCCGGATCATGCGCCTTTCTAAGCCTGCCATAGCTTGC
CAGCCACAGAATACAGAAGCACACCCTCATCATCACAGCTGCAACTCTGCATGACAGAGCAACC
AGCCAGGACAGTGAAGAGCTGGTTTTGAAGACAGTCATACCCATGTTCATGCAGATGTGGCTGC
CTTGGCATGAATTAGAGAACAGTCTTGTACATAAATGTTTTACACTAAAGTTCATAGATGAAGC
AGATCGCTGTGCCATCCTTTCCAGGGCCACAGGAAGTGGACAGGGTGGAGGGGTCTGAGGAGTA
CTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCACCAGAATGTTAAGGGAAGAAGTGTTGGGA
ATTAAGTGAACAATATTTCCTTCCTGACCTCCTCCCCTAGCTCCAAAGGAATACACTCACCTAG
GTCATATTGCATGAACACAGTTTTCATATAGATTGAGGAATGAGAGTTCTCTATTTTATAGACC
CTAGAAAGGAAACATAAGCAACTGCTACATTCTTACAGTAACAACCTGGCTTTGGCAGAAGCAG
ATTTACTATTTTTTTAAATGTGATGGACTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235754 ⟹ XP_006235816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,930 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,459 - 168,618,201 (+)	NCBI
Rnor_6.0	3	176,989,674 - 177,009,425 (+)	NCBI
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI

Sequence:

show sequence

CGGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACCAAG
CTGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGCCAG
CTACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGATATCAACCTGAATTCTCCTAA
CAAAGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGACCCAGGTGTGGTCCACCGGACT
CCAGCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGGTGG
AAGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCTGAA
ACGGAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCATGAT
GTGCAGGGCTCTACTGCCTATGTGAAAACGTCTGAGAAACTTGGAGAGTGGAATGAGAAAGTGA
CGCAGTCTGACCTCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAACATCAGC
TGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGGGCTCATCCGTTC
TCACAATCCTTTAGCAGCTACTCCATCCGACACTCGATAAGTATGCCTGTCATGAGGAACTCTG
CAACCTTCAAGTCATTTGAAGATCGAGTGGGGACCATAAAGTCTAAGGTTGTGGGCGGCAGAGA
GAATGGCAGCGATACCCTCCCTTCCTCACCTGGAAGTGGTGACCAGACATTGCCGGATCATGCG
CCTTTCTAAGCCTGCCATAGCTTGCCAGCCACAGAATACAGAAGCACACCCTCATCATCACAGC
TGCAACTCTGCATGACAGAGCAACCAGCCAGGACAGTGAAGAGCTGGTTTTGAAGACAGTCATA
CCCATGTTCATGCAGATGTGGCTGCCTTGGCATGAATTAGAGAACAGTCTTGTACATAAATGTT
TTACACTAAAGTTCATAGATGAAGCAGATCGCTGTGCCATCCTTTCCAGGGCCACAGGAAGTGG
ACAGGGTGGAGGGGTCTGAGGAGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCACCAG
AATGTTAAGGGAAGAAGTGTTGGGAATTAAGTGAACAATATTTCCTTCCTGACCTCCTCCCCTA
GCTCCAAAGGAATACACTCACCTAGGTCATATTGCATGAACACAGTTTTCATATAGATTGAGGA
ATGAGAGTTCTCTATTTTATAGACCCTAGAAAGGAAACATAAGCAACTGCTACATTCTTACAGT
AACAACCTGGCTTTGGCAGAAGCAGATTTACTATTTTTTTAAATGTGATGGACTTTTCAAAAAT
TAAATAGAAAAAAAGGTGAGGCAAAGCAGCTTTAGCCTCACTGTTGAATATTATTTCTTTGAAT
CCAAGCTGAAACTCAAGCCTTACATCGCCTTATGCTTTGTGTAGTCTTTTATATATCTGTATAA
GTGAGGGTTCTCTAATGGGTTATGGTACTATGTAGAGTTTTACTCTGGCCCATCTCATACTCTG
CCAGTACCAGTTATTACATTTTATTTCTCTAATACTTCCTCCTGCTGTGCAAAGCTTGGTTCTC
TTAAGTAAGGAGTGGCATTTTCCAATAGCTTTCCACTCTGCCTCACAGGGCTCCTGTGCGGTGG
GTCAGGAGGGCTGAGAGAAGAAGAAAAGCCTTTATCTTTAGCATTTGAATGGGATGTGCCCTGT
ACAGTGCTGCTTTACTGACAGTGGGTAGGGCGCTGGTCCATAGTTTCTGCCTGTCTGTTCATTA
CATGGAGAATAAATGAAAAGCAGAACCAACCTTGCAGGTCAGGTAAGGGATGTGGTTTTGGTTC
AGCCAGAACTCTGCTGTCATCTTTTCTCAGGAGTTTCAACGATTTCTAAGTTCCTTCCTCCTGC
CTCCATTTGCCACATTCTGCAGCCTCTCAACACCAGGGCCCTGTGTGTTGAGAGTCACGATTTG
GAGAGAGGGGCAGCACTGTGCCTTAATGGCTTTGAGCAGGGCAAAGACTTTATCTGTGTTGTGC
ATATCTCTGCACTCCTAGGGTGAGGTGGGATTTGTCCCTTTTAGTTTCTGGTCTGATACAGTGT
GACATACCCTGGCTTCTTTGGACACCCTTAGAATACTGTACCACACAAAGCAAGGAACAGCAAG
TAATTGGGGAGCTGAGGAAGAACATGTTATTGGTGTCTCCTTTTCCAGGGTTAAAAACTAATAG
CTGTGTGAGGGAACACATTACAGGAGTGCAGGTCACTGATGTATCCCTAACAAATATTAGCAGA
CAACTTGTCAATAAAGCACTCCTTTGGAGGAAAATACACA

hide sequence

RefSeq Acc Id:

XM_006235757 ⟹ XP_006235819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,980 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,457 - 168,618,201 (+)	NCBI
Rnor_6.0	3	176,989,671 - 177,009,425 (+)	NCBI
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI

Sequence:

show sequence

AGGCGGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACC
AAGCTGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGC
CAGCTACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGATATCAACCTGAATTCTCC
TAACAAAGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGACCCAGGTGTGGTCCACCGG
ACTCCAGCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGG
TGGAAGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCT
GAAACGGAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCAT
GATGTGCAGGGCTCTACTGCCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAA
CATCAGCTGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGGGCTCA
TCCGTTCTCACAATCCTTTAGCAGCTACTCCATCCGACACTCGATAAGTATGCCTGTCATGAGG
AACTCTGCAACCTTCAAGTCATTTGAAGATCGAGTGGGGACCATAAAGTCTAAGGTTGTGGGCG
GCAGAGAGAATGGCAGCGATACCCTCCCTTCCTCACCTGGAAGTGGTGACCAGACATTGCCGGA
TCATGCGCCTTTCTAAGCCTGCCATAGCTTGCCAGCCACAGAATACAGAAGCACACCCTCATCA
TCACAGCTGCAACTCTGCATGACAGAGCAACCAGCCAGGACAGTGAAGAGCTGGTTTTGAAGAC
AGTCATACCCATGTTCATGCAGATGTGGCTGCCTTGGCATGAATTAGAGAACAGTCTTGTACAT
AAATGTTTTACACTAAAGTTCATAGATGAAGCAGATCGCTGTGCCATCCTTTCCAGGGCCACAG
GAAGTGGACAGGGTGGAGGGGTCTGAGGAGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTC
TCACCAGAATGTTAAGGGAAGAAGTGTTGGGAATTAAGTGAACAATATTTCCTTCCTGACCTCC
TCCCCTAGCTCCAAAGGAATACACTCACCTAGGTCATATTGCATGAACACAGTTTTCATATAGA
TTGAGGAATGAGAGTTCTCTATTTTATAGACCCTAGAAAGGAAACATAAGCAACTGCTACATTC
TTACAGTAACAACCTGGCTTTGGCAGAAGCAGATTTACTATTTTTTTAAATGTGATGGACTTTT
CAAAAATTAAATAGAAAAAAAGGTGAGGCAAAGCAGCTTTAGCCTCACTGTTGAATATTATTTC
TTTGAATCCAAGCTGAAACTCAAGCCTTACATCGCCTTATGCTTTGTGTAGTCTTTTATATATC
TGTATAAGTGAGGGTTCTCTAATGGGTTATGGTACTATGTAGAGTTTTACTCTGGCCCATCTCA
TACTCTGCCAGTACCAGTTATTACATTTTATTTCTCTAATACTTCCTCCTGCTGTGCAAAGCTT
GGTTCTCTTAAGTAAGGAGTGGCATTTTCCAATAGCTTTCCACTCTGCCTCACAGGGCTCCTGT
GCGGTGGGTCAGGAGGGCTGAGAGAAGAAGAAAAGCCTTTATCTTTAGCATTTGAATGGGATGT
GCCCTGTACAGTGCTGCTTTACTGACAGTGGGTAGGGCGCTGGTCCATAGTTTCTGCCTGTCTG
TTCATTACATGGAGAATAAATGAAAAGCAGAACCAACCTTGCAGGTCAGGTAAGGGATGTGGTT
TTGGTTCAGCCAGAACTCTGCTGTCATCTTTTCTCAGGAGTTTCAACGATTTCTAAGTTCCTTC
CTCCTGCCTCCATTTGCCACATTCTGCAGCCTCTCAACACCAGGGCCCTGTGTGTTGAGAGTCA
CGATTTGGAGAGAGGGGCAGCACTGTGCCTTAATGGCTTTGAGCAGGGCAAAGACTTTATCTGT
GTTGTGCATATCTCTGCACTCCTAGGGTGAGGTGGGATTTGTCCCTTTTAGTTTCTGGTCTGAT
ACAGTGTGACATACCCTGGCTTCTTTGGACACCCTTAGAATACTGTACCACACAAAGCAAGGAA
CAGCAAGTAATTGGGGAGCTGAGGAAGAACATGTTATTGGTGTCTCCTTTTCCAGGGTTAAAAA
CTAATAGCTGTGTGAGGGAACACATTACAGGAGTGCAGGTCACTGATGTATCCCTAACAAATAT
TAGCAGACAACTTGTCAATAAAGCACTCCTTTGGAGGAAAATACACA

hide sequence

RefSeq Acc Id:

XM_006235759 ⟹ XP_006235821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,862 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,459 - 168,618,201 (+)	NCBI
Rnor_6.0	3	176,989,677 - 177,009,425 (+)	NCBI
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI

Sequence:

show sequence

CGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACCAAGCTG
CCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGCCAGCTA
CACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGATATCAACCTGAATTCTCCTAACAA
AGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGACCCAGGTGTGGTCCACCGGACTCCA
GCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGGTGGAAG
AGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCTGAAACG
GAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCATGATGTG
CAGGGCTCTACTGCCTATGTGAAAACGTCTGAGAAACTTGGAGAGTGGAATGAGAAAGTGACGC
AGTCTGACCTCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAACATCAGCTGC
TCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGGAACTCTGCAACCTTC
AAGTCATTTGAAGATCGAGTGGGGACCATAAAGTCTAAGGTTGTGGGCGGCAGAGAGAATGGCA
GCGATACCCTCCCTTCCTCACCTGGAAGTGGTGACCAGACATTGCCGGATCATGCGCCTTTCTA
AGCCTGCCATAGCTTGCCAGCCACAGAATACAGAAGCACACCCTCATCATCACAGCTGCAACTC
TGCATGACAGAGCAACCAGCCAGGACAGTGAAGAGCTGGTTTTGAAGACAGTCATACCCATGTT
CATGCAGATGTGGCTGCCTTGGCATGAATTAGAGAACAGTCTTGTACATAAATGTTTTACACTA
AAGTTCATAGATGAAGCAGATCGCTGTGCCATCCTTTCCAGGGCCACAGGAAGTGGACAGGGTG
GAGGGGTCTGAGGAGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCACCAGAATGTTAA
GGGAAGAAGTGTTGGGAATTAAGTGAACAATATTTCCTTCCTGACCTCCTCCCCTAGCTCCAAA
GGAATACACTCACCTAGGTCATATTGCATGAACACAGTTTTCATATAGATTGAGGAATGAGAGT
TCTCTATTTTATAGACCCTAGAAAGGAAACATAAGCAACTGCTACATTCTTACAGTAACAACCT
GGCTTTGGCAGAAGCAGATTTACTATTTTTTTAAATGTGATGGACTTTTCAAAAATTAAATAGA
AAAAAAGGTGAGGCAAAGCAGCTTTAGCCTCACTGTTGAATATTATTTCTTTGAATCCAAGCTG
AAACTCAAGCCTTACATCGCCTTATGCTTTGTGTAGTCTTTTATATATCTGTATAAGTGAGGGT
TCTCTAATGGGTTATGGTACTATGTAGAGTTTTACTCTGGCCCATCTCATACTCTGCCAGTACC
AGTTATTACATTTTATTTCTCTAATACTTCCTCCTGCTGTGCAAAGCTTGGTTCTCTTAAGTAA
GGAGTGGCATTTTCCAATAGCTTTCCACTCTGCCTCACAGGGCTCCTGTGCGGTGGGTCAGGAG
GGCTGAGAGAAGAAGAAAAGCCTTTATCTTTAGCATTTGAATGGGATGTGCCCTGTACAGTGCT
GCTTTACTGACAGTGGGTAGGGCGCTGGTCCATAGTTTCTGCCTGTCTGTTCATTACATGGAGA
ATAAATGAAAAGCAGAACCAACCTTGCAGGTCAGGTAAGGGATGTGGTTTTGGTTCAGCCAGAA
CTCTGCTGTCATCTTTTCTCAGGAGTTTCAACGATTTCTAAGTTCCTTCCTCCTGCCTCCATTT
GCCACATTCTGCAGCCTCTCAACACCAGGGCCCTGTGTGTTGAGAGTCACGATTTGGAGAGAGG
GGCAGCACTGTGCCTTAATGGCTTTGAGCAGGGCAAAGACTTTATCTGTGTTGTGCATATCTCT
GCACTCCTAGGGTGAGGTGGGATTTGTCCCTTTTAGTTTCTGGTCTGATACAGTGTGACATACC
CTGGCTTCTTTGGACACCCTTAGAATACTGTACCACACAAAGCAAGGAACAGCAAGTAATTGGG
GAGCTGAGGAAGAACATGTTATTGGTGTCTCCTTTTCCAGGGTTAAAAACTAATAGCTGTGTGA
GGGAACACATTACAGGAGTGCAGGTCACTGATGTATCCCTAACAAATATTAGCAGACAACTTGT
CAATAAAGCACTCCTTTGGAGGAAAATACACA

hide sequence

RefSeq Acc Id:

XM_006235760 ⟹ XP_006235822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,981 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,458 - 168,618,201 (+)	NCBI
Rnor_6.0	3	176,989,672 - 177,009,425 (+)	NCBI
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI

Sequence:

show sequence

GGCGGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACCA
AGCTGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGCC
AGCTACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGATATCAACCTGAATTCTCCT
AACAAAGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGACCCAGGTGTGGTCCACCGGA
CTCCAGCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGGT
GGAAGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCTG
AAACGGAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCATG
ATGTGCAGGGCTCTACTGCCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAAC
ATCAGCTGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGCAGCTAC
TCCATCCGACACTCGATAAGTATGCCTGTCATGAGGAACTCTGCAACCTTCAAGTCATTTGAAG
ATCGAGTGGGGACCATAAAGTCTAAGGTTGTGGGCGGCAGAGAGAATGGCAGCGATACCCTCCC
TTCCTCACCTGGAAGTGGTGACCAGACATTGCCGGATCATGCGCCTTTCTAAGCCTGCCATAGC
TTGCCAGCCACAGAATACAGAAGCACACCCTCATCATCACAGCTGCAACTCTGCATGACAGAGC
AACCAGCCAGGACAGTGAAGAGCTGGTTTTGAAGACAGTCATACCCATGTTCATGCAGATGTGG
CTGCCTTGGCATGAATTAGAGAACAGTCTTGTACATAAATGTTTTACACTAAAGTTCATAGATG
AAGCAGATCGCTGTGCCATCCTTTCCAGGGCCACAGGAAGTGGACAGGGTGGAGGGGTCTGAGG
AGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCACCAGAATGTTAAGGGAAGAAGTGTT
GGGAATTAAGTGAACAATATTTCCTTCCTGACCTCCTCCCCTAGCTCCAAAGGAATACACTCAC
CTAGGTCATATTGCATGAACACAGTTTTCATATAGATTGAGGAATGAGAGTTCTCTATTTTATA
GACCCTAGAAAGGAAACATAAGCAACTGCTACATTCTTACAGTAACAACCTGGCTTTGGCAGAA
GCAGATTTACTATTTTTTTAAATGTGATGGACTTTTCAAAAATTAAATAGAAAAAAAGGTGAGG
CAAAGCAGCTTTAGCCTCACTGTTGAATATTATTTCTTTGAATCCAAGCTGAAACTCAAGCCTT
ACATCGCCTTATGCTTTGTGTAGTCTTTTATATATCTGTATAAGTGAGGGTTCTCTAATGGGTT
ATGGTACTATGTAGAGTTTTACTCTGGCCCATCTCATACTCTGCCAGTACCAGTTATTACATTT
TATTTCTCTAATACTTCCTCCTGCTGTGCAAAGCTTGGTTCTCTTAAGTAAGGAGTGGCATTTT
CCAATAGCTTTCCACTCTGCCTCACAGGGCTCCTGTGCGGTGGGTCAGGAGGGCTGAGAGAAGA
AGAAAAGCCTTTATCTTTAGCATTTGAATGGGATGTGCCCTGTACAGTGCTGCTTTACTGACAG
TGGGTAGGGCGCTGGTCCATAGTTTCTGCCTGTCTGTTCATTACATGGAGAATAAATGAAAAGC
AGAACCAACCTTGCAGGTCAGGTAAGGGATGTGGTTTTGGTTCAGCCAGAACTCTGCTGTCATC
TTTTCTCAGGAGTTTCAACGATTTCTAAGTTCCTTCCTCCTGCCTCCATTTGCCACATTCTGCA
GCCTCTCAACACCAGGGCCCTGTGTGTTGAGAGTCACGATTTGGAGAGAGGGGCAGCACTGTGC
CTTAATGGCTTTGAGCAGGGCAAAGACTTTATCTGTGTTGTGCATATCTCTGCACTCCTAGGGT
GAGGTGGGATTTGTCCCTTTTAGTTTCTGGTCTGATACAGTGTGACATACCCTGGCTTCTTTGG
ACACCCTTAGAATACTGTACCACACAAAGCAAGGAACAGCAAGTAATTGGGGAGCTGAGGAAGA
ACATGTTATTGGTGTCTCCTTTTCCAGGGTTAAAAACTAATAGCTGTGTGAGGGAACACATTAC
AGGAGTGCAGGTCACTGATGTATCCCTAACAAATATTAGCAGACAACTTGTCAATAAAGCACTC
CTTTGGAGGAAAATACACA

hide sequence

RefSeq Acc Id:

XM_006235761 ⟹ XP_006235823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,972,321 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,459 - 168,618,201 (+)	NCBI
Rnor_6.0	3	176,989,675 - 177,009,425 (+)	NCBI
Rnor_5.0	3	180,699,955 - 180,719,706 (+)	NCBI

Sequence:

show sequence

GGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACCAAGC
TGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGCCAGC
TACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGATATCAACCTGAATTCTCCTAAC
AAAGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGACCCAGGTGTGGTCCACCGGACTC
CAGCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGGTGGA
AGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCTGAAA
CGGAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCATGATG
TGCAGGGCTCTACTGCCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAACATC
AGCTGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGGAACTCTGCA
ACCTTCAAGTCATTTGAAGATCGAGTGGGGACCATAAAGTCTAAGGTTGTGGGCGGCAGAGAGA
ATGGCAGCGATACCCTCCCTTCCTCACCTGGAAGTGGTGACCAGACATTGCCGGATCATGCGCC
TTTCTAAGCCTGCCATAGCTTGCCAGCCACAGAATACAGAAGCACACCCTCATCATCACAGCTG
CAACTCTGCATGACAGAGCAACCAGCCAGGACAGTGAAGAGCTGGTTTTGAAGACAGTCATACC
CATGTTCATGCAGATGTGGCTGCCTTGGCATGAATTAGAGAACAGTCTTGTACATAAATGTTTT
ACACTAAAGTTCATAGATGAAGCAGATCGCTGTGCCATCCTTTCCAGGGCCACAGGAAGTGGAC
AGGGTGGAGGGGTCTGAGGAGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCACCAGAA
TGTTAAGGGAAGAAGTGTTGGGAATTAAGTGAACAATATTTCCTTCCTGACCTCCTCCCCTAGC
TCCAAAGGAATACACTCACCTAGGTCATATTGCATGAACACAGTTTTCATATAGATTGAGGAAT
GAGAGTTCTCTATTTTATAGACCCTAGAAAGGAAACATAAGCAACTGCTACATTCTTACAGTAA
CAACCTGGCTTTGGCAGAAGCAGATTTACTATTTTTTTAAATGTGATGGACTTTTCAAAAATTA
AATAGAAAAAAAGGTGAGGCAAAGCAGCTTTAGCCTCACTGTTGAATATTATTTCTTTGAATCC
AAGCTGAAACTCAAGCCTTACATCGCCTTATGCTTTGTGTAGTCTTTTATATATCTGTATAAGT
GAGGGTTCTCTAATGGGTTATGGTACTATGTAGAGTTTTACTCTGGCCCATCTCATACTCTGCC
AGTACCAGTTATTACATTTTATTTCTCTAATACTTCCTCCTGCTGTGCAAAGCTTGGTTCTCTT
AAGTAAGGAGTGGCATTTTCCAATAGCTTTCCACTCTGCCTCACAGGGCTCCTGTGCGGTGGGT
CAGGAGGGCTGAGAGAAGAAGAAAAGCCTTTATCTTTAGCATTTGAATGGGATGTGCCCTGTAC
AGTGCTGCTTTACTGACAGTGGGTAGGGCGCTGGTCCATAGTTTCTGCCTGTCTGTTCATTACA
TGGAGAATAAATGAAAAGCAGAACCAACCTTGCAGGTCAGGTAAGGGATGTGGTTTTGGTTCAG
CCAGAACTCTGCTGTCATCTTTTCTCAGGAGTTTCAACGATTTCTAAGTTCCTTCCTCCTGCCT
CCATTTGCCACATTCTGCAGCCTCTCAACACCAGGGCCCTGTGTGTTGAGAGTCACGATTTGGA
GAGAGGGGCAGCACTGTGCCTTAATGGCTTTGAGCAGGGCAAAGACTTTATCTGTGTTGTGCAT
ATCTCTGCACTCCTAGGGTGAGGTGGGATTTGTCCCTTTTAGTTTCTGGTCTGATACAGTGTGA
CATACCCTGGCTTCTTTGGACACCCTTAGAATACTGTACCACACAAAGCAAGGAACAGCAAGTA
ATTGGGGAGCTGAGGAAGAACATGTTATTGGTGTCTCCTTTTCCAGGGTTAAAAACTAATAGCT
GTGTGAGGGAACACATTACAGGAGTGCAGGTCACTGATGTATCCCTAACAAATATTAGCAGACA
ACTTGTCAATAAAGCACTCCTTTGGAGGAAAATACACA

hide sequence

RefSeq Acc Id:

XM_008762500 ⟹ XP_008760722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,980 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,458 - 168,618,201 (+)	NCBI
Rnor_6.0	3	176,989,672 - 177,009,425 (+)	NCBI

Sequence:

show sequence

GGCGGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTCCACTGGCTCGTGTGTACCA
AGCTGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTGCGATCCCAGCACCGACGCC
AGCTACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGGTGTGGTCCACCGGACTCCA
GCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCCGGGCTGAGCTTGCTAAGGTGGAAG
AGGAAATTGTCACTCTGCGCCAGGTGCTGGCAGCCAAAGAGAGGCACTGTGGAGAGCTGAAACG
GAGACTGGGCCTCTCCACATTAGGGGAGCTGAAGCAGAACCTGTCTAGGAGCTGGCATGATGTG
CAGGGCTCTACTGCCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAACATCAG
CTGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGGAACTCTGCAAC
CTTCAAGTCATTTGAAGATCGAGTGGGGACCATAAAGTCTAAGGTTGTGGGCGGCAGAGAGAAT
GGCAGCGATACCCTCCCTTCCTCACCTGGAAGTGGTGACCAGACATTGCCGGATCATGCGCCTT
TCTAAGCCTGCCATAGCTTGCCAGCCACAGAATACAGAAGCACACCCTCATCATCACAGCTGCA
ACTCTGCATGACAGAGCAACCAGCCAGGACAGTGAAGAGCTGGTTTTGAAGACAGTCATACCCA
TGTTCATGCAGATGTGGCTGCCTTGGCATGAATTAGAGAACAGTCTTGTACATAAATGTTTTAC
ACTAAAGTTCATAGATGAAGCAGATCGCTGTGCCATCCTTTCCAGGGCCACAGGAAGTGGACAG
GGTGGAGGGGTCTGAGGAGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCACCAGAATG
TTAAGGGAAGAAGTGTTGGGAATTAAGTGAACAATATTTCCTTCCTGACCTCCTCCCCTAGCTC
CAAAGGAATACACTCACCTAGGTCATATTGCATGAACACAGTTTTCATATAGATTGAGGAATGA
GAGTTCTCTATTTTATAGACCCTAGAAAGGAAACATAAGCAACTGCTACATTCTTACAGTAACA
ACCTGGCTTTGGCAGAAGCAGATTTACTATTTTTTTAAATGTGATGGACTTTTCAAAAATTAAA
TAGAAAAAAAGGTGAGGCAAAGCAGCTTTAGCCTCACTGTTGAATATTATTTCTTTGAATCCAA
GCTGAAACTCAAGCCTTACATCGCCTTATGCTTTGTGTAGTCTTTTATATATCTGTATAAGTGA
GGGTTCTCTAATGGGTTATGGTACTATGTAGAGTTTTACTCTGGCCCATCTCATACTCTGCCAG
TACCAGTTATTACATTTTATTTCTCTAATACTTCCTCCTGCTGTGCAAAGCTTGGTTCTCTTAA
GTAAGGAGTGGCATTTTCCAATAGCTTTCCACTCTGCCTCACAGGGCTCCTGTGCGGTGGGTCA
GGAGGGCTGAGAGAAGAAGAAAAGCCTTTATCTTTAGCATTTGAATGGGATGTGCCCTGTACAG
TGCTGCTTTACTGACAGTGGGTAGGGCGCTGGTCCATAGTTTCTGCCTGTCTGTTCATTACATG
GAGAATAAATGAAAAGCAGAACCAACCTTGCAGGTCAGGTAAGGGATGTGGTTTTGGTTCAGCC
AGAACTCTGCTGTCATCTTTTCTCAGGAGTTTCAACGATTTCTAAGTTCCTTCCTCCTGCCTCC
ATTTGCCACATTCTGCAGCCTCTCAACACCAGGGCCCTGTGTGTTGAGAGTCACGATTTGGAGA
GAGGGGCAGCACTGTGCCTTAATGGCTTTGAGCAGGGCAAAGACTTTATCTGTGTTGTGCATAT
CTCTGCACTCCTAGGGTGAGGTGGGATTTGTCCCTTTTAGTTTCTGGTCTGATACAGTGTGACA
TACCCTGGCTTCTTTGGACACCCTTAGAATACTGTACCACACAAAGCAAGGAACAGCAAGTAAT
TGGGGAGCTGAGGAAGAACATGTTATTGGTGTCTCCTTTTCCAGGGTTAAAAACTAATAGCTGT
GTGAGGGAACACATTACAGGAGTGCAGGTCACTGATGTATCCCTAACAAATATTAGCAGACAAC
TTGTCAATAAAGCACTCCTTTGGAGGAAAATACACA

hide sequence

RefSeq Acc Id:

XM_017591623 ⟹ XP_017447112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,974 - 188,992,073 (+)	NCBI
mRatBN7.2	3	168,598,452 - 168,614,552 (+)	NCBI
Rnor_6.0	3	176,989,333 - 177,005,775 (+)	NCBI

Sequence:

show sequence

CAGGGAGTGGGGAGAGGTTGACCTGACATTGGGGAGTGCACGGGCCTGAGTTTGACCCGTCGAG
ATGCAAGGTCGAAGGTCTTGTGGGCAGCCGAGGTTTAGGTGGGAAGCCAGCGAACTGTAACACA
ATCCGAGCCATCCCTCGAGTTTCAGCTGTTCTGCCCTTTTTACCCTGGAATTTTACTATGGAAC
CTGATTAGAAGCATTGCTTCCTGCTTCGCTGCAGTCTGACCTATCAAATTGAAAGATTGGTCTT
CGGTGGGGCCAGAGGACTTTCTCATTGGACACTACTTCACCGAGGGCGGGGTGAAGGCGGAGTA
CGAACCCGAGCGGAAGGAAGGCGGCGCGTCCCTGATTACGTAAACGACTGCGGCCCTACAGTTC
CACTGGCTCGTGTGTACCAAGCTGCCAGCTTGCAGTTCTCGGGGCTTGGCTCCTGTAGTACCTG
CGATCCCAGCACCGACGCCAGCTACACCCAGCTGCCGCCTGAACATGGATTCTGCTAGCCAAGA
TATCAACCTGAATTCTCCTAACAAAGGTGTGCTGTCTGATTTTATGACTGATGTCCCTGTTGAC
CCAGGTGTGGTCCACCGGACTCCAGCTGTAGAGGGCCTGACCGAGGTGGAGGAAGAAGAGCTCC
GGGCTGAGCTTGCTAAGCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGGCAGAAAACAT
CAGCTGCTCTGTCCACCATGGGCTCTGCCATCAGCAGGAAGCTCGGAGATATGAGGAACTCTGC
AACCTTCAAGTCATTTGA

hide sequence

RefSeq Acc Id:

XM_039104697 ⟹ XP_038960625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,930 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,459 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_039104698 ⟹ XP_038960626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,930 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,459 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_039104699 ⟹ XP_038960627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,979 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,457 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_039104700 ⟹ XP_038960628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,977 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,456 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_039104701 ⟹ XP_038960629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,980 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,458 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_039104702 ⟹ XP_038960630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,979 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,458 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_039104703 ⟹ XP_038960631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,981 - 188,995,721 (+)	NCBI
mRatBN7.2	3	168,598,461 - 168,618,201 (+)	NCBI

RefSeq Acc Id:

XM_063283446 ⟹ XP_063139516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,978 - 188,995,721 (+)	NCBI

RefSeq Acc Id:

XM_063283447 ⟹ XP_063139517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,978 - 188,995,721 (+)	NCBI

RefSeq Acc Id:

XM_063283448 ⟹ XP_063139518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,972 - 188,995,721 (+)	NCBI

RefSeq Acc Id:

XM_063283449 ⟹ XP_063139519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,974 - 188,995,721 (+)	NCBI

RefSeq Acc Id:

XM_063283451 ⟹ XP_063139521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,975,970 - 188,992,073 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418489	(Get FASTA)	NCBI Sequence Viewer
	NP_001418490	(Get FASTA)	NCBI Sequence Viewer
	NP_001418491	(Get FASTA)	NCBI Sequence Viewer
	NP_001418492	(Get FASTA)	NCBI Sequence Viewer
	NP_001418493	(Get FASTA)	NCBI Sequence Viewer
	NP_001418494	(Get FASTA)	NCBI Sequence Viewer
	NP_001418495	(Get FASTA)	NCBI Sequence Viewer
	NP_001418496	(Get FASTA)	NCBI Sequence Viewer
	NP_001418497	(Get FASTA)	NCBI Sequence Viewer
	NP_942039	(Get FASTA)	NCBI Sequence Viewer
	XP_006235816	(Get FASTA)	NCBI Sequence Viewer
	XP_006235819	(Get FASTA)	NCBI Sequence Viewer
	XP_006235821	(Get FASTA)	NCBI Sequence Viewer
	XP_006235822	(Get FASTA)	NCBI Sequence Viewer
	XP_006235823	(Get FASTA)	NCBI Sequence Viewer
	XP_008760722	(Get FASTA)	NCBI Sequence Viewer
	XP_017447112	(Get FASTA)	NCBI Sequence Viewer
	XP_038960625	(Get FASTA)	NCBI Sequence Viewer
	XP_038960626	(Get FASTA)	NCBI Sequence Viewer
	XP_038960627	(Get FASTA)	NCBI Sequence Viewer
	XP_038960628	(Get FASTA)	NCBI Sequence Viewer
	XP_038960629	(Get FASTA)	NCBI Sequence Viewer
	XP_038960630	(Get FASTA)	NCBI Sequence Viewer
	XP_038960631	(Get FASTA)	NCBI Sequence Viewer
	XP_063139516	(Get FASTA)	NCBI Sequence Viewer
	XP_063139517	(Get FASTA)	NCBI Sequence Viewer
	XP_063139518	(Get FASTA)	NCBI Sequence Viewer
	XP_063139519	(Get FASTA)	NCBI Sequence Viewer
	XP_063139521	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH59167	(Get FASTA)	NCBI Sequence Viewer
	EDL88708	(Get FASTA)	NCBI Sequence Viewer
	EDL88709	(Get FASTA)	NCBI Sequence Viewer
	EDL88710	(Get FASTA)	NCBI Sequence Viewer
	EDL88711	(Get FASTA)	NCBI Sequence Viewer
	EDL88712	(Get FASTA)	NCBI Sequence Viewer
	EDL88713	(Get FASTA)	NCBI Sequence Viewer
	EDL88714	(Get FASTA)	NCBI Sequence Viewer
	EDL88715	(Get FASTA)	NCBI Sequence Viewer
	EDL88716	(Get FASTA)	NCBI Sequence Viewer
	Q6PCT3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_942039 ⟸ NM_198744

- UniProtKB:

Q6PCT3 (UniProtKB/Swiss-Prot), A6KM06 (UniProtKB/TrEMBL), A6KM08 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLR
QVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGSTAYVKTSEKLGEWNEKVTQSDLYKK
TQETLSQAGQKTSAALSTMGSAISRKLGDMSSYSIRHSISMPVMRNSATFKSFEDRVGTIKSKV
VGGRENGSDTLPSSPGSGDQTLPDHAPF

hide sequence

RefSeq Acc Id:	XP_006235819 ⟸ XM_006235757
- Peptide Label:	isoform X5
- UniProtKB:	A6KM04 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLR QVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGSTAYKKTQETLSQAGQKTSAALSTMG SAISRKLGDMRAHPFSQSFSSYSIRHSISMPVMRNSATFKSFEDRVGTIKSKVVGGRENGSDTL PSSPGSGDQTLPDHAPF hide sequence

RefSeq Acc Id:	XP_006235816 ⟸ XM_006235754
- Peptide Label:	isoform X2
- UniProtKB:	A6KM07 (UniProtKB/TrEMBL), A6KM08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLR QVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGSTAYVKTSEKLGEWNEKVTQSDLYKK TQETLSQAGQKTSAALSTMGSAISRKLGDMRAHPFSQSFSSYSIRHSISMPVMRNSATFKSFED RVGTIKSKVVGGRENGSDTLPSSPGSGDQTLPDHAPF hide sequence

RefSeq Acc Id:	XP_006235822 ⟸ XM_006235760
- Peptide Label:	isoform X10
- UniProtKB:	A6KM03 (UniProtKB/TrEMBL), A6KM08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLR QVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGSTAYKKTQETLSQAGQKTSAALSTMG SAISRKLGDMSSYSIRHSISMPVMRNSATFKSFEDRVGTIKSKVVGGRENGSDTLPSSPGSGDQ TLPDHAPF hide sequence

RefSeq Acc Id:	XP_006235821 ⟸ XM_006235759
- Peptide Label:	isoform X7
- UniProtKB:	A6KM05 (UniProtKB/TrEMBL), A6KM08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLR QVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGSTAYVKTSEKLGEWNEKVTQSDLYKK TQETLSQAGQKTSAALSTMGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVGGRENGSDTLPSS PGSGDQTLPDHAPF hide sequence

RefSeq Acc Id:	XP_006235823 ⟸ XM_006235761
- Peptide Label:	isoform X13
- UniProtKB:	A6KM02 (UniProtKB/TrEMBL), A6KM08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLR QVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGSTAYKKTQETLSQAGQKTSAALSTMG SAISRKLGDMRNSATFKSFEDRVGTIKSKVVGGRENGSDTLPSSPGSGDQTLPDHAPF hide sequence

RefSeq Acc Id:	XP_008760722 ⟸ XM_008762500
- Peptide Label:	isoform X17
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSASQGVVHRTPAVEGLTEVEEEELRAELAKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLG ELKQNLSRSWHDVQGSTAYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMRNSATFKSFEDRV GTIKSKVVGGRENGSDTLPSSPGSGDQTLPDHAPF hide sequence

RefSeq Acc Id:	XP_017447112 ⟸ XM_017591623
- Peptide Label:	isoform X19
- Sequence:	show sequence MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPAVEGLTEVEEEELRAELAKLQEDSGNSF TGRAENISCSVHHGLCHQQEARRYEELCNLQVI hide sequence

Ensembl Acc Id:

ENSRNOP00000020374 ⟸ ENSRNOT00000020373

RefSeq Acc Id:	XP_038960628 ⟸ XM_039104700
- Peptide Label:	isoform X6
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960627 ⟸ XM_039104699
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960629 ⟸ XM_039104701
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038960630 ⟸ XM_039104702
- Peptide Label:	isoform X12
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960625 ⟸ XM_039104697
- Peptide Label:	isoform X1
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960626 ⟸ XM_039104698
- Peptide Label:	isoform X3
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960631 ⟸ XM_039104703
- Peptide Label:	isoform X15
- UniProtKB:	A6KM00 (UniProtKB/TrEMBL), A6KM08 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080130 ⟸ ENSRNOT00000114740

Ensembl Acc Id:

ENSRNOP00000082032 ⟸ ENSRNOT00000100247

Ensembl Acc Id:

ENSRNOP00000020210 ⟸ ENSRNOT00000020210

Ensembl Acc Id:

ENSRNOP00000084244 ⟸ ENSRNOT00000114404

RefSeq Acc Id:	XP_063139521 ⟸ XM_063283451
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_063139518 ⟸ XM_063283448
- Peptide Label:	isoform X14
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139519 ⟸ XM_063283449
- Peptide Label:	isoform X16
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139516 ⟸ XM_063283446
- Peptide Label:	isoform X8
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL), A6KM01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139517 ⟸ XM_063283447
- Peptide Label:	isoform X11
- UniProtKB:	A6KM08 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6PCT3-F1-model_v2	AlphaFold	Q6PCT3	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692757

Promoter ID:

EPDNEW_R3281

Type:

initiation region

Name:

Tpd52l2_1

Description:

tumor protein D52-like 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	176,989,718 - 176,989,778	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735167	AgrOrtholog
BioCyc Gene	G2FUF-46281	BioCyc
Ensembl Genes	ENSRNOG00000015067	Ensembl
	ENSRNOG00000015122	Ensembl
IMAGE_CLONE	IMAGE:6890828	IMAGE-MGC_LOAD
InterPro	TPD52	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:296480	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:73020	IMAGE-MGC_LOAD
NCBI Gene	296480	ENTREZGENE
PANTHER	PTHR19307	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TUMOR PROTEIN D54	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TPD52	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tpd52l2	PhenoGen
RatGTEx	ENSRNOG00000015067	RatGTEx
	ENSRNOG00000015122	RatGTEx
UniProt	A6KM00	ENTREZGENE, UniProtKB/TrEMBL
	A6KM01	ENTREZGENE, UniProtKB/TrEMBL
	A6KM02	ENTREZGENE, UniProtKB/TrEMBL
	A6KM03	ENTREZGENE, UniProtKB/TrEMBL
	A6KM04	ENTREZGENE, UniProtKB/TrEMBL
	A6KM05	ENTREZGENE, UniProtKB/TrEMBL
	A6KM06	ENTREZGENE, UniProtKB/TrEMBL
	A6KM07	ENTREZGENE, UniProtKB/TrEMBL
	A6KM08	ENTREZGENE, UniProtKB/TrEMBL
	Q6PCT3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-08-21	Tpd52l2	TPD52 like 2	Tpd52l2	tumor protein D52-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Tpd52l2	tumor protein D52-like 2			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar