Fut7 (fucosyltransferase 7) - Rat Genome Database

Name: Fut7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Fut7 (fucosyltransferase 7) Rattus norvegicus

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Symbol:

Fut7

Name:

fucosyltransferase 7

RGD ID:

735019

Description:

Enables alpha-(1->3)-fucosyltransferase activity. Involved in inflammatory response. Predicted to be located in trans-Golgi network. Orthologous to human FUT7 (fucosyltransferase 7); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha (1,3) fucosyltransferase; alpha (13) fucosyltransferase; alpha-(1,3)-fucosyltransferase; alpha-(1,3)-fucosyltransferase 7; Fuc-TVII; fucosyltransferase 7 (alpha (1,3) fucosyltransferase); fucosyltransferase VII; FucT-VII; galactoside 3-L-fucosyltransferase; selectin ligand synthase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FUT7 (fucosyltransferase 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Fut7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fut7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FUT7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FUT7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fut7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FUT7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FUT7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fut7 (fucosyltransferase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FUT7 (fucosyltransferase 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fut7 (fucosyltransferase 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fut7 (fucosyltransferase 7 (alpha (1,3) fucosyltransferase))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	FucTC	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fut-3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	fut-4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	FucTA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fut-5	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fut-6	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	28,635,913 - 28,640,407 (+)	NCBI		GRCr8
mRatBN7.2	3	8,237,687 - 8,242,273 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,239,384 - 8,242,260 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	11,344,499 - 11,347,371 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,930,721 - 19,933,593 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	18,120,569 - 18,123,441 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	2,637,281 - 2,646,497 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,642,531 - 2,646,648 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	2,623,653 - 2,628,513 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	3,590,174 - 3,593,046 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	3,590,173 - 3,593,045 (+)	NCBI
Celera	3	3,064,494 - 3,067,366 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adams-Oliver Syndrome 5 (ISO)

autosomal dominant intellectual developmental disorder 8 (ISO)

autosomal dominant nocturnal frontal lobe epilepsy 5 (ISO)

developmental and epileptic encephalopathy 14 (ISO)

epilepsy (ISO)

Joubert syndrome 1 (ISO)

Kleefstra syndrome 1 (ISO)

Leigh disease (ISO)

polycystic ovary syndrome (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Rafiq syndrome (ISO)

tuberous sclerosis 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(R)-pantothenic acid (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

acetamide (EXP)

alpha-Zearalanol (EXP)

arsenous acid (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

choline (ISO)

clofibrate (ISO)

diarsenic trioxide (ISO)

disodium selenite (ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

methotrexate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ISO)

ceramide metabolic process (ISO)

embryo implantation (ISO)

fucosylation (IBA)

inflammatory response (IMP)

leukocyte migration involved in immune response (ISO)

leukocyte migration involved in inflammatory response (ISO,ISS)

lymphocyte migration into lymph node (ISO,ISS)

lymphocyte migration into lymphoid organs (ISO)

positive regulation of cell adhesion (ISO)

positive regulation of cell-cell adhesion (ISO)

positive regulation of leukocyte adhesion to vascular endothelial cell (ISO)

positive regulation of leukocyte tethering or rolling (ISO,ISS)

positive regulation of neutrophil migration (ISO,ISS)

protein glycosylation (IEA,ISO)

regulation of cell adhesion molecule production (ISO)

regulation of cell-cell adhesion (ISO,ISS)

regulation of insulin receptor signaling pathway (ISO)

regulation of leukocyte adhesion to vascular endothelial cell (ISO)

regulation of leukocyte cell-cell adhesion (ISO)

regulation of leukocyte tethering or rolling (ISO)

regulation of neutrophil extravasation (ISO)

regulation of type IV hypersensitivity (ISO)

T cell migration (ISO)

Cellular Component

Golgi apparatus (ISO)

Golgi cisterna membrane (IEA)

trans-Golgi network (ISO)

Molecular Function

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity (ISO,ISS)

alpha-(1->3)-fucosyltransferase activity (IBA,IMP,ISO,ISS)

fucosyltransferase activity (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

lacto-series glycosphingolipid metabolic pathway (IEA)

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Cloning and expression of rat fucosyltransferase VII at sites of inflammation.	Niittymäki J, etal., APMIS. 2005 Sep;113(9):613-20. doi: 10.1111/j.1600-0463.2005.apm_279.x.
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Expression of the alpha(1,3)fucosyltransferase Fuc-TVII in lymphoid aggregate high endothelial venules correlates with expression of L-selectin ligands.	Smith PL, etal., J Biol Chem 1996 Apr 5;271(14):8250-9.

Additional References at PubMed

PMID:8207002	PMID:8666674	PMID:8752218	PMID:9299472	PMID:9405391	PMID:9461592	PMID:9473504	PMID:10200296	PMID:10386892	PMID:10894166	PMID:11278338	PMID:11404359
PMID:11535629	PMID:15843584	PMID:15926890	PMID:17229154	PMID:18402946	PMID:18553500	PMID:18573908	PMID:19946888	PMID:23192350	PMID:29138114

Genomics

Comparative Map Data

Fut7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	28,635,913 - 28,640,407 (+)	NCBI		GRCr8
mRatBN7.2	3	8,237,687 - 8,242,273 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,239,384 - 8,242,260 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	11,344,499 - 11,347,371 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,930,721 - 19,933,593 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	18,120,569 - 18,123,441 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	2,637,281 - 2,646,497 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,642,531 - 2,646,648 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	2,623,653 - 2,628,513 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	3,590,174 - 3,593,046 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	3,590,173 - 3,593,045 (+)	NCBI
Celera	3	3,064,494 - 3,067,366 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

FUT7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	137,030,174 - 137,032,088 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	137,030,174 - 137,032,088 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	139,924,626 - 139,926,540 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	139,044,447 - 139,047,283 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	137,200,462 - 137,203,299	NCBI
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	109,383,478 - 109,386,144 (-)	NCBI		HuRef
CHM1_1	9	140,073,389 - 140,076,055 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	149,264,609 - 149,266,523 (-)	NCBI		T2T-CHM13v2.0

Fut7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	25,312,363 - 25,316,386 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	25,313,279 - 25,316,386 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	25,422,351 - 25,426,374 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	25,423,267 - 25,426,374 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	25,279,214 - 25,281,894 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	25,245,293 - 25,248,380 (+)	NCBI		MGSCv36	mm8
Celera	2	25,151,205 - 25,153,885 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	17.25	NCBI

Fut7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955513	5,056,718 - 5,061,974 (-)	NCBI	ChiLan1.0	ChiLan1.0

FUT7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	2,365,825 - 2,368,648 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	2,368,178 - 2,370,890 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	108,090,793 - 108,093,513 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	137,058,831 - 137,061,607 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	137,058,831 - 137,061,607 (-)	Ensembl	panpan1.1		panPan2

FUT7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	48,604,879 - 48,609,292 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	48,606,435 - 48,609,303 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	47,821,203 - 47,822,270 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	49,483,176 - 49,487,261 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	49,485,443 - 49,487,254 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	48,261,839 - 48,262,906 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	48,560,576 - 48,561,643 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	48,607,910 - 48,608,977 (+)	NCBI		UU_Cfam_GSD_1.0

Fut7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	202,448,245 - 202,456,791 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	919,206 - 920,341 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	914,520 - 920,481 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FUT7
(Sus scrofa - pig)

No map positions available.

FUT7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	1,158,353 - 1,160,913 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666058	4,141,161 - 4,143,999 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fut7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	876,059 - 877,574 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	876,048 - 877,984 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fut7
9 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	302
Count of miRNA genes:	194
Interacting mature miRNAs:	218
Transcripts:	ENSRNOT00000037169
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat

Markers in Region

UniSTS:224625

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	8,241,868 - 8,242,111 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	2,646,095 - 2,646,337	NCBI	Rnor6.0
Rnor_5.0	3	2,627,508 - 2,627,750	UniSTS	Rnor5.0
RGSC_v3.4	3	3,592,653 - 3,592,895	UniSTS	RGSC3.4
Celera	3	3,066,973 - 3,067,215	UniSTS
Cytogenetic Map	3	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	6	40	113	91	90	59	25	59	6	197	85	93	40	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_199491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ276068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037169 ⟹ ENSRNOP00000033858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	8,239,384 - 8,242,260 (+)	Ensembl
Rnor_6.0 Ensembl	3	2,643,610 - 2,646,486 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081798 ⟹ ENSRNOP00000069960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	2,642,531 - 2,646,648 (+)	Ensembl

RefSeq Acc Id:

NM_199491 ⟹ NP_955785

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,637,535 - 28,640,407 (+)	NCBI
mRatBN7.2	3	8,239,390 - 8,242,262 (+)	NCBI
Rnor_6.0	3	2,643,616 - 2,646,488 (+)	NCBI
Rnor_5.0	3	2,623,653 - 2,628,513 (+)	NCBI
RGSC_v3.4	3	3,590,174 - 3,593,046 (+)	RGD
Celera	3	3,064,494 - 3,067,366 (+)	RGD

Sequence:

show sequence

GCCCTTCTCCTAGTCCTGGTCAGCAGAGTAGGGGATCTGGTGGGGCTGGAGGAAGCTTGGCTAA
AGCTTTGTACAGGTTCCAGCTCTGGGTGACCCTGGCAGGCTACCTACCCTGGTCTGTGTCATTG
CACCCCCAGAGTGGGAGGCTTGGTAAAGTGGAGGAGAACCTTAGCTACAAGCTATAGGTTAGCC
CATCAGAGCCAGCTGGAGAGAAACCAGACAAGTCCAAACCTGAGACTGGTACTAGCCTTTCTGT
TGCTGGAGTGGAAGCCAACCCCTGCCTACCAGCCTGCCTGTCCACGTCAGGGACACACAGACTC
CTTCCCTTTCCAGACTGGAAAGCCCCCTCCTGGGATAGCAGGAAGGAGGCAACCTGCAACTCTT
CCTGGCCTGGCCTTTGGGCTGAGCCTATGGTTCAAGGGTGCCTCTGTTGGAGAGGCTGCTGTGA
TTTGAAAACCTCCTTTCCCTGGGTGACTAATTCCAGAAGGCTCTGGATGAATTGTATTGGGTGC
AACCCCGTCTGGAGGCTGCGGGCCTGGGGGTGTCTGGCTGGAGGTACAACACTCATGGTAATCT
GGCTCTTCTGGCTGCTGCGATCAGTTCCTGGGGGTGCCCCAGCGCCCCAGCCCACACTCACCAT
CCTTATCTGGCACTGGCCTTTCACCAACCGGTCGCCAGAGCTGTCTAGCGACACCTGCACTCGC
TATGGCATGGCCAGCTGCCACCTGAGTGCTAACCGGAGTCTGCTAGCCAGTGCTGATGCTGTGG
TCTTCCACCATCGTGAGCTGCAGACCCGGCACTCTCGCCTGCCCCTGGACCAGAGGCCGCACGG
ACAGCCTTGGGTCTGGGCCACCATGGAATCACCCAGTAATACCCATGGTCTCCGTCACTTCCGG
GGCATCTTCAACTGGGTGCTGAGCTATCGGCGTGATTCAGATATCTTTGTACCCTATGGTCGCT
TAGAGCCCTTCTCTGGGCCTACGCCCCCACTACCAGCCAAAAGCAGGATGGCTGCCTGGGTGGT
CAGCAATTTCCAGGAGCGGCAGCAGCGGGCAAAGCTGTACCGGCAGCTGGCCCCTCATCTGAAG
GTGGATGTGTTCGGTCGCGCCAGTGGACGGCCCCTGTGCCCTAACTGTCTGCTGCCCACTGTGG
CCCGGTACCGCTTCTACCTGTCCTTTGAGAACTCACAGCACCGGGACTACATCACCGAGAAGTT
CTGGCGCAATGCACTGGCCGCTGGCGCTGTGCCTGTGGTGCTGGGACCTCCTCGGACTACCTAC
GAGGCTTTCGTGCCACCAGATGCCTTTATACACGTAGATGACTTCAGCTCTGCCCGTGAACTAG
CTGTCTTCCTTGTCAGCATGAATGAGAGTCGCTATCGTGGCTTCTTTGCTTGGCGAGACCGGCT
CCGTGTGCGGCTCCTGAATGACTGGAGGGAGCGCTTCTGCACCATCTGCGCCCGCTACCCTTAC
TTGCCCCGCAGCCAGGTCTATGAAGACCTGGAAAGCTGGTTCCAAGCTTGAACTCCTGCTGCTG
GGAGAGGCTGTGTGCGTGGAAGACTGATGATGAAATGGAAGGGCTTTTGGGTCACCATGGGACT
AACCCTAGGCTTAGGTCAGTGAATAGGAAGTCAGGATATGAGGAGAAGGCTGGGCTGAGAAGCC
ATATGGATGAGGACTCTGGTGGGCTTTAGAGTAGGGACCCAGGGAAGGAAACATTTATGAGGAG
CGTGGGGGAAAACTATTCAAACGGGAAAGTGGCTGAGGGTCCTGGACTTACCTTGAGTATGCTC
ATGGCTCAAGGCTCAGGTGAAAAAGGGAGCAGTTTTTTTTGAGCTGGGAGCATCCAAAGCTGGG
ATTTGTGGGGACAAACATGGTGCCCTGAACCTCCACAATCAAGGTGCTTAGCCTCAGGGATACA
GGTGTGTGTTCCAGAACTCCCATGCAAACTGTATGCTGAGCCCAGGGGTTGTGGGAGAAGGATG
GTGTGGATGATTCTGGGCCTTTGACACCCACAGTTCCCTGAGGGAAAGAGGCCCCTAATAATAA
AATTATTCCCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGT

hide sequence

RefSeq Acc Id:

XM_006233585 ⟹ XP_006233647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,636,577 - 28,640,407 (+)	NCBI
mRatBN7.2	3	8,238,422 - 8,242,273 (+)	NCBI
Rnor_6.0	3	2,642,611 - 2,646,497 (+)	NCBI
Rnor_5.0	3	2,623,653 - 2,628,513 (+)	NCBI

Sequence:

show sequence

ATGTTGAGGCCCCTGACTTTCCCTTTGACTCATGATCTCTCACCCTTCTTCCTTTACCCTTTTT
TATTCTGACCCATTTCTGGGCTAAACTTCTGAGCGTTCTCCTCACCTAGTGTGTTCTCATGATC
AGGTGCCCCTACACCCTAAGAGACCCTGTGGACCCTCTTCCAACAGGAGCTGGCGTGAGGGGTG
GTCAGTATAACAGTTCCGAGGCAGATGTGGGGGAGGTTTCTTCAAATCCACCCAGGAAGGGAAC
AGCCTGTGGGCGTGGGTGAGCTGGGGCAAAGGCCCCAGCCAGCCTGGCGGCACAAACAGGAAGG
ACAGCAGGCTCTGGCAGCCAGAAGCCTGTGGCCCCAAGCTGGCAGGATGGCCCCCTTCCTGCAG
GTCCCCCATAGCCTTCTGGGTTCCTGACACAGAGAAGAGGTGGGGCGGGCGAAGTGAGCTCTGA
AGCCAGAGTGGTACTCTCCTGGGGTCTCTCCTTGGGAGGAGACAGAGAAAGATGCCAGGGCAGA
GACAAAAAGGCAGCTGTCACTATGGTTGTCTTACTAAGCACCGAGTGACTAGAGAGGCAAGGGC
ACAGCTGCCCACTCCATGGCCACCTCCTGTTGTATCTCAAACCAGCTAGCTAGTTTCTGATGGC
ACCCACACCCTCCCTTCCCCTTTACATATTGCGCAAGCTCTCCACCACAATCTGGAGGTTATGC
CCTGCATGGGGGTGGAGGGGAGTAGGGCACTTCTAAGGTGCCGATCAGCCTGCATTTGCCTCTG
CCCTGGCCATGGGACTGCTGTCCGTTTCTTGGTTCCTGTCTCAACAGCAGCCTCGTTACGGTGC
AACCCCGTCTGGAGGCTGCGGGCCTGGGGGTGTCTGGCTGGAGGTACAACACTCATGGTAATCT
GGCTCTTCTGGCTGCTGCGATCAGTTCCTGGGGGTGCCCCAGCGCCCCAGCCCACACTCACCAT
CCTTATCTGGCACTGGCCTTTCACCAACCGGTCGCCAGAGCTGTCTAGCGACACCTGCACTCGC
TATGGCATGGCCAGCTGCCACCTGAGTGCTAACCGGAGTCTGCTAGCCAGTGCTGATGCTGTGG
TCTTCCACCATCGTGAGCTGCAGACCCGGCACTCTCGCCTGCCCCTGGACCAGAGGCCGCACGG
ACAGCCTTGGGTCTGGGCCACCATGGAATCACCCAGTAATACCCATGGTCTCCGTCACTTCCGG
GGCATCTTCAACTGGGTGCTGAGCTATCGGCGTGATTCAGATATCTTTGTACCCTATGGTCGCT
TAGAGCCCTTCTCTGGGCCTACGCCCCCACTACCAGCCAAAAGCAGGATGGCTGCCTGGGTGGT
CAGCAATTTCCAGGAGCGGCAGCAGCGGGCAAAGCTGTACCGGCAGCTGGCCCCTCATCTGAAG
GTGGATGTGTTCGGTCGCGCCAGTGGACGGCCCCTGTGCCCTAACTGTCTGCTGCCCACTGTGG
CCCGGTACCGCTTCTACCTGTCCTTTGAGAACTCACAGCACCGGGACTACATCACCGAGAAGTT
CTGGCGCAATGCACTGGCCGCTGGCGCTGTGCCTGTGGTGCTGGGACCTCCTCGGACTACCTAC
GAGGCTTTCGTGCCACCAGATGCCTTTATACACGTAGATGACTTCAGCTCTGCCCGTGAACTAG
CTGTCTTCCTTGTCAGCATGAATGAGAGTCGCTATCGTGGCTTCTTTGCTTGGCGAGACCGGCT
CCGTGTGCGGCTCCTGAATGACTGGAGGGAGCGCTTCTGCACCATCTGCGCCCGCTACCCTTAC
TTGCCCCGCAGCCAGGTCTATGAAGACCTGGAAAGCTGGTTCCAAGCTTGAACTCCTGCTGCTG
GGAGAGGCTGTGTGCGTGGAAGACTGATGATGAAATGGAAGGGCTTTTGGGTCACCATGGGACT
AACCCTAGGCTTAGGTCAGTGAATAGGAAGTCAGGATATGAGGAGAAGGCTGGGCTGAGAAGCC
ATATGGATGAGGACTCTGGTGGGCTTTAGAGTAGGGACCCAGGGAAGGAGACAATTAATGAGGA
GCGTGTGGGAAAAGCTAGTCAAACGGGGAAAGTGGCTGAGGGTCCTGGACTTACCTTGAGTATG
CTCATGGCTCAAGGCTCAGGTGAAAAGGGGAGGCAGTGTCTCTGGAGCTGGGAGCATCCAAAGC
TGGGATTTGTGGGGACAAACATGGTGCCCTGAACCTCCACAATCAAGGTGCTTAGCCTCAGGGA
TACAGGTGTGTGTTCCAGAACTCCACATGCAAACTGTATGCTGAGCCCAGGGGTTGTGGGAGAA
GGATGGTGTGGATGATTCTGGGCCTTTGACACCACAGTTCCCTGAGGGAAAGAGGCACCACTAA
TAATAAAATTATTCACTTGTAATAGAGACAC

hide sequence

RefSeq Acc Id:

XM_006233586 ⟹ XP_006233648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,636,581 - 28,640,407 (+)	NCBI
mRatBN7.2	3	8,238,427 - 8,242,273 (+)	NCBI
Rnor_6.0	3	2,642,611 - 2,646,497 (+)	NCBI
Rnor_5.0	3	2,623,653 - 2,628,513 (+)	NCBI

Sequence:

show sequence

ATGTTGAGGCCCCTGACTTTCCCTTTGACTCATGATCTCTCACCCTTCTTCCTTTACCCTTTTT
TATTCTGACCCATTTCTGGGCTAAACTTCTGAGCGTTCTCCTCACCTAGTGTGTTCTCATGATC
AGGTGCCCCTACACCCTAAGAGACCCTGTGGACCCTCTTCCAACAGGAGCTGGCGTGAGGGGTG
GTCAGTATAACAGTTCCGAGGCAGATGTGGGGGAGGTTTCTTCAAATCCACCCAGGAAGGGAAC
AGCCTGTGGGCGTGGGTGAGCTGGGGCAAAGGCCCCAGCCAGCCTGGCGGCACAAACAGGAAGG
ACAGCAGGCTCTGGCAGCCAGAAGCCTGTGGCCCCAAGCTGGCAGGATGGCCCCCTTCCTGCAG
GTCCCCCATAGCCTTCTGGGTTCCTGACACAGAGAAGAGGTGGGGCGGGCGAAGTGAGCTCTGA
AGCCAGAGTGGTACTCTCCTGGGGTCTCTCCTTGGGAGGAGACAGAGAAAGATGCCAGGGCAGA
GACAAAAAGGCAGCTGTCACTATGGTTGTCTTACTAAGCACCGAGTGACTAGAGAGGCAAGGGC
ACAGCTGCCCACTCCATGGCCACCTCCTGTTGTATCTCAAACCAGCTAGCTAGTTTCTGATGGC
ACCCACACCCTCCCTTCCCCTTTACATATTGCGCAAGCTCTCCACCACAATCTGGAGGTTATGC
CCTGCATGGGGGTGGAGGGGAGTAGGGCACTTCTAAGGTGCCGATCAGCCTGCATTTGCCTCTG
CCCTGGCCATGGGACTGCTGTCCGTTTCTTGGTTCCTGTCTCAACAGCAGCCTCGGTGCAACCC
CGTCTGGAGGCTGCGGGCCTGGGGGTGTCTGGCTGGAGGTACAACACTCATGGTAATCTGGCTC
TTCTGGCTGCTGCGATCAGTTCCTGGGGGTGCCCCAGCGCCCCAGCCCACACTCACCATCCTTA
TCTGGCACTGGCCTTTCACCAACCGGTCGCCAGAGCTGTCTAGCGACACCTGCACTCGCTATGG
CATGGCCAGCTGCCACCTGAGTGCTAACCGGAGTCTGCTAGCCAGTGCTGATGCTGTGGTCTTC
CACCATCGTGAGCTGCAGACCCGGCACTCTCGCCTGCCCCTGGACCAGAGGCCGCACGGACAGC
CTTGGGTCTGGGCCACCATGGAATCACCCAGTAATACCCATGGTCTCCGTCACTTCCGGGGCAT
CTTCAACTGGGTGCTGAGCTATCGGCGTGATTCAGATATCTTTGTACCCTATGGTCGCTTAGAG
CCCTTCTCTGGGCCTACGCCCCCACTACCAGCCAAAAGCAGGATGGCTGCCTGGGTGGTCAGCA
ATTTCCAGGAGCGGCAGCAGCGGGCAAAGCTGTACCGGCAGCTGGCCCCTCATCTGAAGGTGGA
TGTGTTCGGTCGCGCCAGTGGACGGCCCCTGTGCCCTAACTGTCTGCTGCCCACTGTGGCCCGG
TACCGCTTCTACCTGTCCTTTGAGAACTCACAGCACCGGGACTACATCACCGAGAAGTTCTGGC
GCAATGCACTGGCCGCTGGCGCTGTGCCTGTGGTGCTGGGACCTCCTCGGACTACCTACGAGGC
TTTCGTGCCACCAGATGCCTTTATACACGTAGATGACTTCAGCTCTGCCCGTGAACTAGCTGTC
TTCCTTGTCAGCATGAATGAGAGTCGCTATCGTGGCTTCTTTGCTTGGCGAGACCGGCTCCGTG
TGCGGCTCCTGAATGACTGGAGGGAGCGCTTCTGCACCATCTGCGCCCGCTACCCTTACTTGCC
CCGCAGCCAGGTCTATGAAGACCTGGAAAGCTGGTTCCAAGCTTGAACTCCTGCTGCTGGGAGA
GGCTGTGTGCGTGGAAGACTGATGATGAAATGGAAGGGCTTTTGGGTCACCATGGGACTAACCC
TAGGCTTAGGTCAGTGAATAGGAAGTCAGGATATGAGGAGAAGGCTGGGCTGAGAAGCCATATG
GATGAGGACTCTGGTGGGCTTTAGAGTAGGGACCCAGGGAAGGAGACAATTAATGAGGAGCGTG
TGGGAAAAGCTAGTCAAACGGGGAAAGTGGCTGAGGGTCCTGGACTTACCTTGAGTATGCTCAT
GGCTCAAGGCTCAGGTGAAAAGGGGAGGCAGTGTCTCTGGAGCTGGGAGCATCCAAAGCTGGGA
TTTGTGGGGACAAACATGGTGCCCTGAACCTCCACAATCAAGGTGCTTAGCCTCAGGGATACAG
GTGTGTGTTCCAGAACTCCACATGCAAACTGTATGCTGAGCCCAGGGGTTGTGGGAGAAGGATG
GTGTGGATGATTCTGGGCCTTTGACACCACAGTTCCCTGAGGGAAAGAGGCACCACTAATAATA
AAATTATTCACTTGTAATAGAGACAC

hide sequence

RefSeq Acc Id:

XM_006233587 ⟹ XP_006233649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,635,913 - 28,640,407 (+)	NCBI
mRatBN7.2	3	8,237,687 - 8,242,273 (+)	NCBI
Rnor_6.0	3	2,642,462 - 2,646,497 (+)	NCBI
Rnor_5.0	3	2,623,653 - 2,628,513 (+)	NCBI

Sequence:

show sequence

TGTGTGTGTGTGTGTGTTGGAGGAGGACCCACATGGTCTCTTAGGCTGGGTAGAATGTGTGACC
CTGATCCTGTGAGCCTCCAAACATAATGTAAAGCTGGGTGTTTGGGTGCCCGTGTGAGCCAGGA
GGCCTGGTGAGGGTGCAACCCCGTCTGGAGGCTGCGGGCCTGGGGGTGTCTGGCTGGAGGTACA
ACACTCATGGTAATCTGGCTCTTCTGGCTGCTGCGATCAGTTCCTGGGGGTGCCCCAGCGCCCC
AGCCCACACTCACCATCCTTATCTGGCACTGGCCTTTCACCAACCGGTCGCCAGAGCTGTCTAG
CGACACCTGCACTCGCTATGGCATGGCCAGCTGCCACCTGAGTGCTAACCGGAGTCTGCTAGCC
AGTGCTGATGCTGTGGTCTTCCACCATCGTGAGCTGCAGACCCGGCACTCTCGCCTGCCCCTGG
ACCAGAGGCCGCACGGACAGCCTTGGGTCTGGGCCACCATGGAATCACCCAGTAATACCCATGG
TCTCCGTCACTTCCGGGGCATCTTCAACTGGGTGCTGAGCTATCGGCGTGATTCAGATATCTTT
GTACCCTATGGTCGCTTAGAGCCCTTCTCTGGGCCTACGCCCCCACTACCAGCCAAAAGCAGGA
TGGCTGCCTGGGTGGTCAGCAATTTCCAGGAGCGGCAGCAGCGGGCAAAGCTGTACCGGCAGCT
GGCCCCTCATCTGAAGGTGGATGTGTTCGGTCGCGCCAGTGGACGGCCCCTGTGCCCTAACTGT
CTGCTGCCCACTGTGGCCCGGTACCGCTTCTACCTGTCCTTTGAGAACTCACAGCACCGGGACT
ACATCACCGAGAAGTTCTGGCGCAATGCACTGGCCGCTGGCGCTGTGCCTGTGGTGCTGGGACC
TCCTCGGACTACCTACGAGGCTTTCGTGCCACCAGATGCCTTTATACACGTAGATGACTTCAGC
TCTGCCCGTGAACTAGCTGTCTTCCTTGTCAGCATGAATGAGAGTCGCTATCGTGGCTTCTTTG
CTTGGCGAGACCGGCTCCGTGTGCGGCTCCTGAATGACTGGAGGGAGCGCTTCTGCACCATCTG
CGCCCGCTACCCTTACTTGCCCCGCAGCCAGGTCTATGAAGACCTGGAAAGCTGGTTCCAAGCT
TGAACTCCTGCTGCTGGGAGAGGCTGTGTGCGTGGAAGACTGATGATGAAATGGAAGGGCTTTT
GGGTCACCATGGGACTAACCCTAGGCTTAGGTCAGTGAATAGGAAGTCAGGATATGAGGAGAAG
GCTGGGCTGAGAAGCCATATGGATGAGGACTCTGGTGGGCTTTAGAGTAGGGACCCAGGGAAGG
AGACAATTAATGAGGAGCGTGTGGGAAAAGCTAGTCAAACGGGGAAAGTGGCTGAGGGTCCTGG
ACTTACCTTGAGTATGCTCATGGCTCAAGGCTCAGGTGAAAAGGGGAGGCAGTGTCTCTGGAGC
TGGGAGCATCCAAAGCTGGGATTTGTGGGGACAAACATGGTGCCCTGAACCTCCACAATCAAGG
TGCTTAGCCTCAGGGATACAGGTGTGTGTTCCAGAACTCCACATGCAAACTGTATGCTGAGCCC
AGGGGTTGTGGGAGAAGGATGGTGTGGATGATTCTGGGCCTTTGACACCACAGTTCCCTGAGGG
AAAGAGGCACCACTAATAATAAAATTATTCACTTGTAATAGAGACAC

hide sequence

RefSeq Acc Id:

XM_039104714 ⟹ XP_038960642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,636,585 - 28,640,407 (+)	NCBI
mRatBN7.2	3	8,239,073 - 8,242,273 (+)	NCBI

RefSeq Acc Id:

XM_039104715 ⟹ XP_038960643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,636,583 - 28,640,407 (+)	NCBI
mRatBN7.2	3	8,238,428 - 8,242,273 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418448	(Get FASTA)	NCBI Sequence Viewer
	NP_001418449	(Get FASTA)	NCBI Sequence Viewer
	NP_001418450	(Get FASTA)	NCBI Sequence Viewer
	NP_955785	(Get FASTA)	NCBI Sequence Viewer
	XP_006233647	(Get FASTA)	NCBI Sequence Viewer
	XP_006233648	(Get FASTA)	NCBI Sequence Viewer
	XP_006233649	(Get FASTA)	NCBI Sequence Viewer
	XP_038960642	(Get FASTA)	NCBI Sequence Viewer
	XP_038960643	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAC81972	(Get FASTA)	NCBI Sequence Viewer
	EDL93588	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033858.4
	ENSRNOP00055000697
	ENSRNOP00060033511
	ENSRNOP00065035838
GenBank Protein	Q712G6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_955785 ⟸ NM_199491

- UniProtKB:

Q712G6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVQGCLCWRGCCDLKTSFPWVTNSRRLWMNCIGCNPVWRLRAWGCLAGGTTLMVIWLFWLLRSV
PGGAPAPQPTLTILIWHWPFTNRSPELSSDTCTRYGMASCHLSANRSLLASADAVVFHHRELQT
RHSRLPLDQRPHGQPWVWATMESPSNTHGLRHFRGIFNWVLSYRRDSDIFVPYGRLEPFSGPTP
PLPAKSRMAAWVVSNFQERQQRAKLYRQLAPHLKVDVFGRASGRPLCPNCLLPTVARYRFYLSF
ENSQHRDYITEKFWRNALAAGAVPVVLGPPRTTYEAFVPPDAFIHVDDFSSARELAVFLVSMNE
SRYRGFFAWRDRLRVRLLNDWRERFCTICARYPYLPRSQVYEDLESWFQA

hide sequence

RefSeq Acc Id:

XP_006233649 ⟸ XM_006233587

- Peptide Label:

isoform X5

- Sequence:

show sequence

MVIWLFWLLRSVPGGAPAPQPTLTILIWHWPFTNRSPELSSDTCTRYGMASCHLSANRSLLASA
DAVVFHHRELQTRHSRLPLDQRPHGQPWVWATMESPSNTHGLRHFRGIFNWVLSYRRDSDIFVP
YGRLEPFSGPTPPLPAKSRMAAWVVSNFQERQQRAKLYRQLAPHLKVDVFGRASGRPLCPNCLL
PTVARYRFYLSFENSQHRDYITEKFWRNALAAGAVPVVLGPPRTTYEAFVPPDAFIHVDDFSSA
RELAVFLVSMNESRYRGFFAWRDRLRVRLLNDWRERFCTICARYPYLPRSQVYEDLESWFQA

hide sequence

RefSeq Acc Id:

XP_006233647 ⟸ XM_006233585

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPCMGVEGSRALLRCRSACICLCPGHGTAVRFLVPVSTAASLRCNPVWRLRAWGCLAGGTTLMV
IWLFWLLRSVPGGAPAPQPTLTILIWHWPFTNRSPELSSDTCTRYGMASCHLSANRSLLASADA
VVFHHRELQTRHSRLPLDQRPHGQPWVWATMESPSNTHGLRHFRGIFNWVLSYRRDSDIFVPYG
RLEPFSGPTPPLPAKSRMAAWVVSNFQERQQRAKLYRQLAPHLKVDVFGRASGRPLCPNCLLPT
VARYRFYLSFENSQHRDYITEKFWRNALAAGAVPVVLGPPRTTYEAFVPPDAFIHVDDFSSARE
LAVFLVSMNESRYRGFFAWRDRLRVRLLNDWRERFCTICARYPYLPRSQVYEDLESWFQA

hide sequence

RefSeq Acc Id:

XP_006233648 ⟸ XM_006233586

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGLLSVSWFLSQQQPRCNPVWRLRAWGCLAGGTTLMVIWLFWLLRSVPGGAPAPQPTLTILIWH
WPFTNRSPELSSDTCTRYGMASCHLSANRSLLASADAVVFHHRELQTRHSRLPLDQRPHGQPWV
WATMESPSNTHGLRHFRGIFNWVLSYRRDSDIFVPYGRLEPFSGPTPPLPAKSRMAAWVVSNFQ
ERQQRAKLYRQLAPHLKVDVFGRASGRPLCPNCLLPTVARYRFYLSFENSQHRDYITEKFWRNA
LAAGAVPVVLGPPRTTYEAFVPPDAFIHVDDFSSARELAVFLVSMNESRYRGFFAWRDRLRVRL
LNDWRERFCTICARYPYLPRSQVYEDLESWFQA

hide sequence

Ensembl Acc Id:

ENSRNOP00000069960 ⟸ ENSRNOT00000081798

Ensembl Acc Id:

ENSRNOP00000033858 ⟸ ENSRNOT00000037169

RefSeq Acc Id:	XP_038960643 ⟸ XM_039104715
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960642 ⟸ XM_039104714
- Peptide Label:	isoform X3
- UniProtKB:	A6JT59 (UniProtKB/TrEMBL)

Protein Domains

Fucosyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q712G6-F1-model_v2	AlphaFold	Q712G6	1-370	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735019	AgrOrtholog
BioCyc Gene	G2FUF-50454	BioCyc
BioCyc Pathway	PWY-7831 [ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide]	BioCyc
BioCyc Pathway Image	PWY-7831	BioCyc
Ensembl Genes	ENSRNOG00000014156	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00055000510	UniProtKB/Swiss-Prot
	ENSRNOG00060023400	UniProtKB/Swiss-Prot
	ENSRNOG00065025335	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000037169.5	UniProtKB/Swiss-Prot
	ENSRNOT00055000883	UniProtKB/Swiss-Prot
	ENSRNOT00060040549	UniProtKB/Swiss-Prot
	ENSRNOT00065043659	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.11660	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Glyco_tran_10_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_trans_10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GT10-like_C_sf	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report	rno:296564	UniProtKB/Swiss-Prot
NCBI Gene	296564	ENTREZGENE
PANTHER	ALPHA- 1,3 -FUCOSYLTRANSFERASE	UniProtKB/TrEMBL
	ALPHA-(1,3)-FUCOSYLTRANSFERASE 7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11929	UniProtKB/Swiss-Prot
Pfam	Glyco_tran_10_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_transf_10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Fut7	PhenoGen
RatGTEx	ENSRNOG00000014156	RatGTEx
	ENSRNOG00055000510	RatGTEx
	ENSRNOG00060023400	RatGTEx
	ENSRNOG00065025335	RatGTEx
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6JT59	ENTREZGENE, UniProtKB/TrEMBL
	FUT7_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Fut7	fucosyltransferase 7	Fut7	fucosyltransferase 7 (alpha (1,3) fucosyltransferase)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Fut7	fucosyltransferase 7 (alpha (1,3) fucosyltransferase)	Fut7	fucosyltransferase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Fut7	fucosyltransferase 7	fut7	fucosyltransferase VII	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways