Lgals3bp (lectin, galactoside-binding, soluble, 3 binding protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lgals3bp (lectin, galactoside-binding, soluble, 3 binding protein) Mus musculus
Analyze
Symbol: Lgals3bp
Name: lectin, galactoside-binding, soluble, 3 binding protein
RGD ID: 734457
MGI Page MGI
Description: Predicted to enable scavenger receptor activity. Predicted to act upstream of or within cell adhesion. Located in extracellular space. Is expressed in several structures, including brain; genitourinary system; gut; integumental system; and liver and biliary system. Orthologous to human LGALS3BP (galectin 3 binding protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 90K; CyC; CyCAP; cyp-C-associated protein; galectin-3-binding protein; lectin galactoside-binding soluble 3-binding protein; MAC-2; MAC-2BP; mama; P; peptidylprolyl isomerase C-associated protein; Ppicap; Tango; Tango10b
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,283,573 - 118,292,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,283,577 - 118,292,918 (-)EnsemblGRCm39 Ensembl
GRCm3811118,392,747 - 118,401,959 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,392,751 - 118,402,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711118,254,066 - 118,263,245 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611118,208,842 - 118,218,021 (-)NCBIMGSCv36mm8
Celera11130,138,124 - 130,147,304 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
carnosic acid  (EXP)
choline  (EXP)
ciprofibrate  (EXP)
cisplatin  (EXP,ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenthion  (EXP)
folic acid  (EXP)
fructose  (EXP)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glucose  (EXP)
glycerol  (ISO)
glycidol  (ISO)
glyphosate  (EXP)
ivermectin  (ISO)
ketamine  (ISO)
lidocaine  (ISO)
lipopolysaccharide  (EXP,ISO)
methidathion  (EXP)
methylphenidate  (EXP)
microcystin-LR  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosomorpholine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentachlorophenol  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium chromate  (ISO)
propane-1,2-diol  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triclosan  (ISO)
triptonide  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8119883   PMID:8341703   PMID:9013622   PMID:10077627   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15507443   PMID:15747579  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16204073   PMID:16602821   PMID:16998803   PMID:18554416   PMID:19627619   PMID:20049854   PMID:21182835   PMID:21267068   PMID:21435337  
PMID:21677750   PMID:21873635   PMID:22001906   PMID:22967998   PMID:23341629   PMID:23526992   PMID:24006456   PMID:25053427   PMID:25320078   PMID:25428218   PMID:26496610   PMID:30550785  
PMID:32325033   PMID:34638731   PMID:37191353   PMID:37839992  


Genomics

Comparative Map Data
Lgals3bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,283,573 - 118,292,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,283,577 - 118,292,918 (-)EnsemblGRCm39 Ensembl
GRCm3811118,392,747 - 118,401,959 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,392,751 - 118,402,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711118,254,066 - 118,263,245 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611118,208,842 - 118,218,021 (-)NCBIMGSCv36mm8
Celera11130,138,124 - 130,147,304 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.14NCBI
LGALS3BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,971,255 - 78,979,923 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,971,238 - 78,979,947 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,967,337 - 76,976,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361774,478,932 - 74,487,656 (-)NCBINCBI36Build 36hg18NCBI36
Build 341774,478,931 - 74,487,656NCBI
Celera1773,565,513 - 73,574,236 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1772,389,730 - 72,393,296 (-)NCBIHuRef
CHM1_11777,031,240 - 77,039,980 (-)NCBICHM1_1
T2T-CHM13v2.01779,866,027 - 79,877,550 (-)NCBIT2T-CHM13v2.0
Lgals3bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810104,118,510 - 104,127,848 (-)NCBIGRCr8
mRatBN7.210103,619,912 - 103,629,251 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,619,908 - 103,629,256 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10108,720,443 - 108,729,788 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010108,183,587 - 108,192,936 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010103,540,609 - 103,549,947 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010107,415,334 - 107,424,672 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10107,415,326 - 107,424,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,050,332 - 107,059,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,388,185 - 108,397,523 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110108,402,688 - 108,412,024 (-)NCBI
Celera10102,180,031 - 102,189,369 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Lgals3bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555063,731,761 - 3,741,459 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555063,731,810 - 3,741,314 (+)NCBIChiLan1.0ChiLan1.0
LGALS3BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21995,020,274 - 95,029,119 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,850,323 - 99,859,173 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01773,047,777 - 73,056,431 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11778,592,239 - 78,600,886 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1778,592,239 - 78,600,886 (-)Ensemblpanpan1.1panPan2
Lgals3bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,095,650 - 3,108,097 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365943,303,256 - 3,316,343 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365943,303,862 - 3,316,313 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LGALS3BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,212,432 - 3,222,711 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,212,435 - 3,222,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103243670
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,941,895 - 70,950,544 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,941,562 - 70,947,736 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607742,074,191 - 42,082,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lgals3bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248018,302,210 - 8,311,904 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248018,302,447 - 8,311,836 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lgals3bp
274 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1009
Count of miRNA genes:506
Interacting mature miRNAs:594
Transcripts:ENSMUST00000043722, ENSMUST00000106290, ENSMUST00000127054, ENSMUST00000141459, ENSMUST00000144529
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse

Markers in Region
Ppicap  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811118,392,894 - 118,393,077UniSTSGRCm38
MGSCv3711118,254,208 - 118,254,391UniSTSGRCm37
Celera11130,138,266 - 130,138,449UniSTS
Cytogenetic Map11EUniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK079915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP765555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L16894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U76646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X67809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000043722   ⟹   ENSMUSP00000035579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,283,577 - 118,292,918 (-)Ensembl
GRCm38.p6 Ensembl11118,392,751 - 118,402,092 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106290   ⟹   ENSMUSP00000101897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,287,433 - 118,292,678 (-)Ensembl
GRCm38.p6 Ensembl11118,396,607 - 118,401,852 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127054   ⟹   ENSMUSP00000121024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,290,587 - 118,291,864 (-)Ensembl
GRCm38.p6 Ensembl11118,399,761 - 118,401,038 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,287,635 - 118,292,698 (-)Ensembl
GRCm38.p6 Ensembl11118,396,809 - 118,401,872 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144529   ⟹   ENSMUSP00000120846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,283,577 - 118,288,977 (-)Ensembl
GRCm38.p6 Ensembl11118,392,751 - 118,398,151 (-)Ensembl
RefSeq Acc Id: NM_011150   ⟹   NP_035280
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,283,573 - 118,292,785 (-)NCBI
GRCm3811118,392,747 - 118,401,959 (-)NCBI
MGSCv3711118,254,066 - 118,263,245 (-)RGD
Celera11130,138,124 - 130,147,304 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036156429   ⟹   XP_036012322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,283,573 - 118,292,787 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035280   ⟸   NM_011150
- Peptide Label: precursor
- UniProtKB: Q3U8K4 (UniProtKB/Swiss-Prot),   Q3U631 (UniProtKB/Swiss-Prot),   O35649 (UniProtKB/Swiss-Prot),   Q3UDL5 (UniProtKB/Swiss-Prot),   Q07797 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000120846   ⟸   ENSMUST00000144529
RefSeq Acc Id: ENSMUSP00000121024   ⟸   ENSMUST00000127054
RefSeq Acc Id: ENSMUSP00000101897   ⟸   ENSMUST00000106290
RefSeq Acc Id: ENSMUSP00000035579   ⟸   ENSMUST00000043722
RefSeq Acc Id: XP_036012322   ⟸   XM_036156429
- Peptide Label: isoform X1
Protein Domains
BACK   BTB   SRCR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q07797-F1-model_v2 AlphaFold Q07797 1-577 view protein structure

Promoters
RGD ID:6846853
Promoter ID:MM_ACW:9552
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:LGALS3BP.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,254,991 - 118,255,642 (-)MPROMDB
RGD ID:6821173
Promoter ID:MM_KWN:10781
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000008561
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,259,054 - 118,259,554 (-)MPROMDB
RGD ID:6821172
Promoter ID:MM_KWN:10782
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour
Transcripts:OTTMUST00000008562
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,261,904 - 118,262,404 (-)MPROMDB
RGD ID:6821171
Promoter ID:MM_KWN:10783
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106290,   OTTMUST00000008559,   OTTMUST00000008560
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,263,066 - 118,263,566 (-)MPROMDB
RGD ID:8677564
Promoter ID:EPDNEW_M16813
Type:initiation region
Name:Lgals3bp_1
Description:Mus musculus lectin, galactoside-binding, soluble, 3 bindingprotein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811118,401,945 - 118,402,005EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99554 AgrOrtholog
Ensembl Genes ENSMUSG00000033880 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043722 ENTREZGENE
  ENSMUST00000043722.10 UniProtKB/Swiss-Prot
  ENSMUST00000106290.4 UniProtKB/TrEMBL
  ENSMUST00000144529.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot
  3.10.250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BACK UniProtKB/Swiss-Prot
  BTB/POZ_dom UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  SRCR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19039 UniProtKB/Swiss-Prot
MGD MGI:99554 ENTREZGENE
NCBI Gene 19039 ENTREZGENE
PANTHER GALECTIN-3-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HL07962P-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LCCL/LECTIN ADHESIVE-LIKE PROTEIN 1 UniProtKB/TrEMBL
  SRCR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam BACK UniProtKB/Swiss-Prot
  SRCR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lgals3bp PhenoGen
PRINTS SPERACTRCPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BTB UniProtKB/Swiss-Prot
  SRCR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
  SM00202 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
  SSF56487 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q5X5_MOUSE UniProtKB/TrEMBL
  F6VRP8_MOUSE UniProtKB/TrEMBL
  LG3BP_MOUSE UniProtKB/Swiss-Prot
  O35649 ENTREZGENE
  Q07797 ENTREZGENE
  Q3U631 ENTREZGENE
  Q3U8K4 ENTREZGENE
  Q3UDL5 ENTREZGENE
UniProt Secondary O35649 UniProtKB/Swiss-Prot
  Q3U631 UniProtKB/Swiss-Prot
  Q3U8K4 UniProtKB/Swiss-Prot
  Q3UDL5 UniProtKB/Swiss-Prot