Nup155 (nucleoporin 155) - Rat Genome Database

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Gene: Nup155 (nucleoporin 155) Mus musculus
Analyze
Symbol: Nup155
Name: nucleoporin 155
RGD ID: 734442
MGI Page MGI
Description: Predicted to be a structural constituent of nuclear pore. Acts upstream of or within atrial cardiac muscle cell action potential; mRNA export from nucleus; and protein import into nucleus. Predicted to be located in cytoplasm and nuclear membrane. Predicted to be part of nuclear pore inner ring. Human ortholog(s) of this gene implicated in familial atrial fibrillation. Orthologous to human NUP155 (nucleoporin 155); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 155 kDa nucleoporin; D930027M19Rik; mKIAA0791; nuclear pore complex protein Nup155; nucleoporin Nup155
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,135,861 - 8,189,343 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,138,757 - 8,190,731 (+)Ensembl
GRCm38158,109,263 - 8,159,859 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,109,273 - 8,161,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,059,313 - 8,109,859 (+)NCBIGRCm37mm9NCBIm37
MGSCv36158,056,575 - 8,106,034 (+)NCBImm8
Celera157,953,625 - 8,004,283 (+)NCBICelera
Cytogenetic Map15A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12034489   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:19070573   PMID:20360068   PMID:21677750   PMID:21873635   PMID:22922362   PMID:23086144   PMID:24457600   PMID:25737280   PMID:26496610   PMID:27113764   PMID:28378742   PMID:29848314  
PMID:30457570   PMID:30550785  


Genomics

Comparative Map Data
Nup155
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,135,861 - 8,189,343 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,138,757 - 8,190,731 (+)Ensembl
GRCm38158,109,263 - 8,159,859 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,109,273 - 8,161,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,059,313 - 8,109,859 (+)NCBIGRCm37mm9NCBIm37
MGSCv36158,056,575 - 8,106,034 (+)NCBImm8
Celera157,953,625 - 8,004,283 (+)NCBICelera
Cytogenetic Map15A1NCBI
NUP155
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl537,288,137 - 37,371,106 (-)EnsemblGRCh38hg38GRCh38
GRCh38537,288,137 - 37,371,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37537,288,239 - 37,371,208 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36537,327,698 - 37,406,954 (-)NCBINCBI36hg18NCBI36
Build 34537,327,697 - 37,406,954NCBI
Celera537,178,878 - 37,258,122 (-)NCBI
Cytogenetic Map5p13.2NCBI
HuRef537,244,125 - 37,323,358 (-)NCBIHuRef
CHM1_1537,294,516 - 37,374,012 (-)NCBICHM1_1
Nup155
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2257,201,310 - 57,252,918 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl257,201,272 - 57,254,148 (+)Ensembl
Rnor_6.0257,206,665 - 57,258,242 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,206,613 - 57,258,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0277,213,967 - 77,265,544 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4257,711,414 - 57,762,974 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1257,639,646 - 57,691,207 (+)NCBI
Celera252,816,019 - 52,867,498 (+)NCBICelera
Cytogenetic Map2q16NCBI
Nup155
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,997,208 - 22,057,205 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,997,208 - 22,057,205 (-)NCBIChiLan1.0ChiLan1.0
NUP155
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1578,284,523 - 78,360,762 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl578,285,001 - 78,360,601 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0573,000,597 - 73,080,417 (+)NCBIMhudiblu_PPA_v0panPan3
NUP155
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1471,340,109 - 71,409,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl471,340,168 - 71,408,038 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha470,949,814 - 71,020,167 (+)NCBI
ROS_Cfam_1.0471,849,218 - 71,919,625 (+)NCBI
UMICH_Zoey_3.1471,597,052 - 71,665,228 (+)NCBI
UNSW_CanFamBas_1.0471,717,004 - 71,785,588 (+)NCBI
UU_Cfam_GSD_1.0472,250,039 - 72,318,205 (+)NCBI
Nup155
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213226,682,602 - 226,736,090 (-)NCBI
SpeTri2.0NW_0049365184,635,970 - 4,688,669 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP155
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1622,516,990 - 22,589,838 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11622,520,443 - 22,590,119 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21623,672,725 - 23,742,044 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP155
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1436,167,078 - 36,243,040 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607126,516,374 - 26,592,704 (-)NCBIVero_WHO_p1.0
Nup155
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475917,682,816 - 17,760,448 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
UniSTS:237261  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,159,130 - 8,159,335UniSTSGRCm38
MGSCv37158,109,130 - 8,109,335UniSTSGRCm37
Celera158,003,554 - 8,003,759UniSTS
Cytogenetic Map15A2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300953Bdt5_mbone density traits 5 (mouse)Not determined15120460347Mouse
1301023Sluc24_msusceptibility to lung cancer 24 (mouse)Not determined15120460347Mouse
1302121Cliff_mcliff drop aversion (mouse)Not determined15120460347Mouse
1301662Faq8_mfluctuating asymmetry QTL 8 (mouse)Not determined15120460347Mouse
5491193Mobq4_mmultigenic obesity QTL 4 (mouse)Not determined15120460347Mouse
4141541Tglq3_mtriglyceride QTL 3 (mouse)Not determined15120460347Mouse
1357459Nhdlq7_mnon-HDL QTL 7 (mouse)Not determined15120460347Mouse
11062069Bpq31_mblood pressure QTL 31 (mouse)15126273109Mouse
4141446Ffaq4_mfree fatty acid QTL 4 (mouse)Not determined127101304Mouse
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218650Mouse
1301136Pgia8_mproteoglycan induced arthritis 8 (mouse)Not determined15321068524388090Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15344490771325689Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346456637464566Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562040839620528Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15610000038000000Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15610000050900000Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15610000068400000Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15610000071600000Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15610000072600000Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15610000076000000Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15680000045100000Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15690000076000000Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15690000076000000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15720000055400000Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15760000055400000Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15760000059400000Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15810000038900000Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15810000047800000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:652
Count of miRNA genes:419
Interacting mature miRNAs:494
Transcripts:ENSMUST00000163765
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF322375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO040753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO433695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000163765   ⟹   ENSMUSP00000128819
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,138,757 - 8,190,731 (+)Ensembl
GRCm38.p6 Ensembl158,109,273 - 8,161,247 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229039
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,172,608 - 8,174,056 (+)Ensembl
GRCm38.p6 Ensembl158,143,124 - 8,144,572 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229466
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,159,582 - 8,164,418 (+)Ensembl
GRCm38.p6 Ensembl158,130,098 - 8,134,934 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230017   ⟹   ENSMUSP00000155093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,138,820 - 8,186,520 (+)Ensembl
GRCm38.p6 Ensembl158,109,336 - 8,157,036 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230337
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,172,530 - 8,177,056 (+)Ensembl
GRCm38.p6 Ensembl158,143,046 - 8,147,572 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230647
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,182,826 - 8,185,555 (+)Ensembl
GRCm38.p6 Ensembl158,153,342 - 8,156,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,180,567 - 8,188,308 (+)Ensembl
GRCm38.p6 Ensembl158,151,083 - 8,158,824 (+)Ensembl
RefSeq Acc Id: NM_133227   ⟹   NP_573490
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,138,797 - 8,189,343 (+)NCBI
GRCm38158,109,313 - 8,159,859 (+)NCBI
MGSCv37158,059,313 - 8,109,859 (+)RGD
Celera157,953,625 - 8,004,283 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_003951358
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,135,861 - 8,187,314 (+)NCBI
GRCm38158,109,263 - 8,157,830 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_573490   ⟸   NM_133227
- UniProtKB: Q99P88 (UniProtKB/Swiss-Prot),   Q6ZQ45 (UniProtKB/TrEMBL),   Q8BUA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128819   ⟸   ENSMUST00000163765
RefSeq Acc Id: ENSMUSP00000155093   ⟸   ENSMUST00000230017
Protein Domains
Nucleoporin_C   Nucleoporin_N

Promoters
RGD ID:6826289
Promoter ID:MM_KWN:17982
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:UC007VEI.1,   UC007VEJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,058,934 - 8,059,434 (+)MPROMDB
RGD ID:8683364
Promoter ID:EPDNEW_M19712
Type:initiation region
Name:Nup155_1
Description:Mus musculus nucleoporin 155 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,109,332 - 8,109,392EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2181182 AgrOrtholog
Ensembl Genes ENSMUSG00000022142 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000128819 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000155093 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000163765 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000230017 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleoporin_Nup133/Nup155_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_Nup133/Nup155_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_Nup155 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_Nup155_C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_Nup155_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_Nup155_C_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report mmu:170762 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2181182 ENTREZGENE
NCBI Gene 170762 ENTREZGENE
PANTHER PTHR10350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nucleoporin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup155 PhenoGen
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R8VHH1_MOUSE UniProtKB/TrEMBL
  NU155_MOUSE UniProtKB/Swiss-Prot
  Q3UL43_MOUSE UniProtKB/TrEMBL
  Q3USP6_MOUSE UniProtKB/TrEMBL
  Q6ZQ45 ENTREZGENE, UniProtKB/TrEMBL
  Q80X48_MOUSE UniProtKB/TrEMBL
  Q8BKJ0_MOUSE UniProtKB/TrEMBL
  Q8BLF5_MOUSE UniProtKB/TrEMBL
  Q8BLM6_MOUSE UniProtKB/TrEMBL
  Q8BUA6 ENTREZGENE, UniProtKB/TrEMBL
  Q99P88 ENTREZGENE