Nfs1 (nitrogen fixation gene 1 (S. cerevisiae)) - Rat Genome Database

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Gene: Nfs1 (nitrogen fixation gene 1 (S. cerevisiae)) Mus musculus
Analyze
Symbol: Nfs1
Name: nitrogen fixation gene 1 (S. cerevisiae)
RGD ID: 734360
MGI Page MGI
Description: Predicted to enable cysteine desulfurase activity and protein homodimerization activity. Involved in [4Fe-4S] cluster assembly and iron incorporation into metallo-sulfur cluster. Located in mitochondrial matrix and nucleus. Part of mitochondrial [2Fe-2S] assembly complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 52. Orthologous to human NFS1 (NFS1 cysteine desulfurase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA987187; cysteine desulfurase; cysteine desulfurase, mitochondrial; m-Nf; m-Nfs1; m-Nfsl; nifS-like (sic); nitrogen fixation gene, yeast homolog 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,965,569 - 155,986,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,965,559 - 155,986,106 (-)EnsemblGRCm39 Ensembl
GRCm382156,123,637 - 156,144,202 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,123,639 - 156,144,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,949,373 - 155,969,922 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,815,090 - 155,835,626 (-)NCBIMGSCv36mm8
Celera2162,059,133 - 162,079,762 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO,ISS)
cytoplasm  (ISO)
cytosol  (IBA,ISO,ISS)
iron-sulfur cluster assembly complex  (NAS)
mitochondrial [2Fe-2S] assembly complex  (IDA,ISO)
mitochondrial matrix  (IDA,ISO)
mitochondrion  (HDA,IBA,IDA,ISO,NAS)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IDA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9738949   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11110795   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14651853   PMID:14681479   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16787928   PMID:16847322   PMID:17603005   PMID:18287559   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21298097   PMID:21677750   PMID:21873635  
PMID:23593335   PMID:25597503   PMID:27519411   PMID:29097656   PMID:29168506   PMID:29222160   PMID:30550785   PMID:32325033   PMID:33601422   PMID:36114006   PMID:36417873   PMID:36604605  
PMID:37072933  


Genomics

Comparative Map Data
Nfs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,965,569 - 155,986,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,965,559 - 155,986,106 (-)EnsemblGRCm39 Ensembl
GRCm382156,123,637 - 156,144,202 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,123,639 - 156,144,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,949,373 - 155,969,922 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,815,090 - 155,835,626 (-)NCBIMGSCv36mm8
Celera2162,059,133 - 162,079,762 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.34NCBI
NFS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,668,052 - 35,699,352 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,668,052 - 35,699,355 (-)EnsemblGRCh38hg38GRCh38
GRCh372034,255,974 - 34,287,274 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,720,025 - 33,750,688 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,745,916 - 33,750,688NCBI
Celera2031,004,905 - 31,035,569 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2031,034,024 - 31,064,670 (-)NCBIHuRef
CHM1_12034,158,261 - 34,189,218 (-)NCBICHM1_1
T2T-CHM13v2.02037,389,027 - 37,420,327 (-)NCBIT2T-CHM13v2.0
Nfs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,097,390 - 165,119,730 (-)NCBIGRCr8
mRatBN7.23144,637,309 - 144,659,660 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,637,309 - 144,659,666 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,503,081 - 148,525,423 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,120,353 - 157,142,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,859,878 - 154,882,218 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,665,813 - 151,688,151 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,200,936 - 152,222,647 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,665,814 - 151,688,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03158,030,431 - 158,052,775 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,528,820 - 146,551,156 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3143,359,073 - 143,381,415 (-)NCBICelera
Cytogenetic Map3q42NCBI
Nfs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,760,099 - 25,785,108 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542225,759,988 - 25,785,560 (+)NCBIChiLan1.0ChiLan1.0
NFS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,399,636 - 41,431,798 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,392,739 - 41,424,949 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,994,509 - 32,026,776 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12033,116,018 - 33,147,749 (-)NCBIpanpan1.1PanPan1.1panPan2
NFS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,593,348 - 24,614,938 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,594,264 - 24,614,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,238,426 - 24,259,999 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,285,895 - 25,307,493 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,285,893 - 25,307,884 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,572,224 - 24,593,783 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,667,259 - 24,688,864 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,106,694 - 25,128,280 (-)NCBIUU_Cfam_GSD_1.0
Nfs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,590,462 - 173,613,116 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365615,136,692 - 5,158,266 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,000,644 - 39,029,185 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,000,659 - 39,029,179 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,351,262 - 44,379,781 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NFS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,592,304 - 56,617,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,592,308 - 56,617,469 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,935,798 - 2,960,540 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,736,411 - 3,774,014 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,736,352 - 3,774,456 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:957
Count of miRNA genes:498
Interacting mature miRNAs:586
Transcripts:ENSMUST00000029147, ENSMUST00000109600, ENSMUST00000125449, ENSMUST00000159952, ENSMUST00000160165, ENSMUST00000162612, ENSMUST00000184469
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13524521Bodwtq2_mbody wweight QTL 2 (mouse)2153456184156386184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
D2Mit48  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,124,680 - 156,124,809UniSTSGRCm38
MGSCv372155,950,416 - 155,950,545UniSTSGRCm37
Celera2162,060,176 - 162,060,281UniSTS
Cytogenetic Map2H1UniSTS
cM Map287.0UniSTS
Whitehead Genetic273.2UniSTS
Whitehead_YAC2 UniSTS
AA987187  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,124,035 - 156,124,151UniSTSGRCm38
MGSCv372155,949,771 - 155,949,887UniSTSGRCm37
Celera2162,059,531 - 162,059,647UniSTS
Cytogenetic Map2H1UniSTS
Whitehead/MRC_RH21904.71UniSTS
D2Dcr112  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,124,687 - 156,124,802UniSTSGRCm38
MGSCv372155,950,423 - 155,950,538UniSTSGRCm37
Celera2162,060,183 - 162,060,274UniSTS
Cytogenetic Map2H1UniSTS
cM Map2 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001420438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ222660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000029147   ⟹   ENSMUSP00000029147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,965,559 - 155,986,106 (-)Ensembl
GRCm38.p6 Ensembl2156,123,639 - 156,144,186 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109600   ⟹   ENSMUSP00000105229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,983,707 - 155,986,100 (-)Ensembl
GRCm38.p6 Ensembl2156,141,787 - 156,144,180 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,980,427 - 155,986,073 (-)Ensembl
GRCm38.p6 Ensembl2156,138,507 - 156,144,153 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184469   ⟹   ENSMUSP00000139294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,965,570 - 155,981,729 (-)Ensembl
GRCm38.p6 Ensembl2156,123,650 - 156,139,809 (-)Ensembl
RefSeq Acc Id: NM_001420438   ⟹   NP_001407367
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,965,569 - 155,986,106 (-)NCBI
RefSeq Acc Id: NM_001420439   ⟹   NP_001407368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,974,003 - 155,986,106 (-)NCBI
RefSeq Acc Id: NM_001420440   ⟹   NP_001407369
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,983,706 - 155,986,106 (-)NCBI
RefSeq Acc Id: NM_010911   ⟹   NP_035041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,965,569 - 155,986,106 (-)NCBI
GRCm382156,123,637 - 156,144,186 (-)ENTREZGENE
MGSCv372155,949,373 - 155,969,922 (-)RGD
Celera2162,059,133 - 162,079,762 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185175
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,965,569 - 155,986,106 (-)NCBI
RefSeq Acc Id: NP_035041   ⟸   NM_010911
- Peptide Label: isoform 1
- UniProtKB: Q8C6I5 (UniProtKB/Swiss-Prot),   Q9Z1J3 (UniProtKB/Swiss-Prot),   Q921V3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000139294   ⟸   ENSMUST00000184469
Ensembl Acc Id: ENSMUSP00000029147   ⟸   ENSMUST00000029147
Ensembl Acc Id: ENSMUSP00000105229   ⟸   ENSMUST00000109600
RefSeq Acc Id: NP_001407367   ⟸   NM_001420438
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001407368   ⟸   NM_001420439
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001407369   ⟸   NM_001420440
- Peptide Label: isoform 4
- UniProtKB: A6QRH3 (UniProtKB/TrEMBL)
Protein Domains
Aminotransferase class V

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z1J3-F1-model_v2 AlphaFold Q9Z1J3 1-459 view protein structure

Promoters
RGD ID:6831859
Promoter ID:MM_KWN:32598
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Liver,   MEF_B4,   MEF_B6
Transcripts:NM_010911,   UC008NMK.1,   UC008NML.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362155,969,886 - 155,970,667 (-)MPROMDB
RGD ID:6879398
Promoter ID:EPDNEW_M3150
Type:initiation region
Name:Nfs1_1
Description:Mus musculus nitrogen fixation gene 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382156,144,186 - 156,144,246EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1316706 AgrOrtholog
Ensembl Genes ENSMUSG00000027618 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029147 ENTREZGENE
  ENSMUST00000029147.16 UniProtKB/Swiss-Prot
  ENSMUST00000109600 ENTREZGENE
  ENSMUST00000109600.2 UniProtKB/TrEMBL
  ENSMUST00000184469.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotrans_V_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_V_PyrdxlP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cys_deSase_IscS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cysteine_dSase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18041 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1316706 ENTREZGENE
NCBI Gene 18041 ENTREZGENE
PANTHER CYSTEINE DESULFURYLASE FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11601:SF34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aminotran_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfs1 PhenoGen
PIRSF NifS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6QRH3 ENTREZGENE, UniProtKB/TrEMBL
  NFS1_MOUSE UniProtKB/Swiss-Prot
  Q8C6I5 ENTREZGENE
  Q921V3 ENTREZGENE, UniProtKB/TrEMBL
  Q9CTB2_MOUSE UniProtKB/TrEMBL
  Q9Z1J3 ENTREZGENE
  V9GXS4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8C6I5 UniProtKB/Swiss-Prot