Apba3 (amyloid beta precursor protein binding family A member 3) - Rat Genome Database

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Gene: Apba3 (amyloid beta precursor protein binding family A member 3) Mus musculus
Analyze
Symbol: Apba3
Name: amyloid beta precursor protein binding family A member 3 (Ensembl:amyloid beta (A4) precursor protein-binding, family A, member 3)
RGD ID: 734359
MGI Page MGI
Description: Predicted to enable amyloid-beta binding activity; enzyme binding activity; and enzyme inhibitor activity. Acts upstream of or within chemical synaptic transmission; in utero embryonic development; and regulation of gene expression. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm; dendritic spine; and plasma membrane. Orthologous to human APBA3 (amyloid beta precursor protein binding family A member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adapter protein X11gamma; amyloid beta (A4) precursor protein-binding, family A, member 3; amyloid beta A4 precursor protein-binding family A member 3; amyloid-beta A4 precursor protein-binding family A member 3; AW208791; lin; lin-10; Mint; Mint 3; Mint-3; mint3; neuron-specific X11L2 protein; neuronal munc18-1-interacting protein 3; X11gam; X11gamma
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,102,799 - 81,109,081 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,102,794 - 81,109,080 (+)EnsemblGRCm39 Ensembl
GRCm381081,266,935 - 81,273,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,266,960 - 81,273,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv371080,730,917 - 80,735,992 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,671,369 - 80,676,357 (+)NCBIMGSCv36mm8
Celera1082,288,520 - 82,293,595 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9822620   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14990567   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:17167098   PMID:17687045   PMID:18201694   PMID:18799693   PMID:19118172   PMID:21267068   PMID:21677750   PMID:21778228   PMID:21873635   PMID:21893028   PMID:24742670  
PMID:27698125   PMID:28507122   PMID:28634075   PMID:30988517   PMID:32325033   PMID:33854054  


Genomics

Comparative Map Data
Apba3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,102,799 - 81,109,081 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,102,794 - 81,109,080 (+)EnsemblGRCm39 Ensembl
GRCm381081,266,935 - 81,273,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,266,960 - 81,273,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv371080,730,917 - 80,735,992 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,671,369 - 80,676,357 (+)NCBIMGSCv36mm8
Celera1082,288,520 - 82,293,595 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
APBA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,750,772 - 3,761,692 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,750,772 - 3,761,692 (-)EnsemblGRCh38hg38GRCh38
GRCh37193,750,770 - 3,761,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,701,771 - 3,712,673 (-)NCBINCBI36Build 36hg18NCBI36
Build 34193,701,770 - 3,712,673NCBI
Celera193,688,414 - 3,699,318 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,515,484 - 3,526,388 (-)NCBIHuRef
CHM1_1193,750,394 - 3,761,300 (-)NCBICHM1_1
T2T-CHM13v2.0193,730,024 - 3,740,952 (-)NCBIT2T-CHM13v2.0
Apba3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,096,936 - 9,103,457 (-)NCBIGRCr8
mRatBN7.278,446,212 - 8,451,310 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,446,216 - 8,451,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,330,573 - 11,334,995 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,206,056 - 13,210,478 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,073,623 - 11,078,045 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,314,468 - 11,319,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,314,424 - 11,319,516 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,481,876 - 11,486,939 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,930,024 - 9,934,446 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,930,023 - 9,934,446 (-)NCBI
Celera76,634,549 - 6,638,968 (-)NCBICelera
Cytogenetic Map7q11NCBI
Apba3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,647,356 - 5,653,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,647,274 - 5,654,634 (-)NCBIChiLan1.0ChiLan1.0
APBA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,146,583 - 8,157,588 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,378,214 - 7,389,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,774,535 - 2,785,404 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,722,896 - 3,734,153 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,722,896 - 3,734,153 (-)Ensemblpanpan1.1panPan2
APBA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,712,908 - 55,720,532 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,713,773 - 55,721,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,438,515 - 55,445,981 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,373,249 - 56,380,716 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,373,266 - 56,380,707 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,429,083 - 55,436,538 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,911,085 - 55,918,550 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,109,834 - 56,117,300 (+)NCBIUU_Cfam_GSD_1.0
Apba3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,704,698 - 215,710,499 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,124,396 - 2,130,085 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,124,286 - 2,130,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APBA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,930,109 - 74,938,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,930,077 - 74,945,372 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,521,563 - 75,535,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APBA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,505,907 - 3,517,464 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,506,044 - 3,517,462 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,732,480 - 4,744,059 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apba3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,398,622 - 6,403,984 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,398,541 - 6,405,904 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Apba3
120 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:131
Interacting mature miRNAs:135
Transcripts:ENSMUST00000057798
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse

Markers in Region
RH128401  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381081,272,933 - 81,273,196UniSTSGRCm38
MGSCv371080,735,678 - 80,735,941UniSTSGRCm37
Celera1082,293,281 - 82,293,544UniSTS
Cytogenetic Map10C1UniSTS
RH131893  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381081,273,237 - 81,273,386UniSTSGRCm38
MGSCv371080,735,982 - 80,736,131UniSTSGRCm37
Celera1082,293,585 - 82,293,734UniSTS
Cytogenetic Map10C1UniSTS
AW208791  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
Whitehead/MRC_RH10911.94UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001429264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF070975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ031518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000057798   ⟹   ENSMUSP00000050995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,104,006 - 81,109,080 (+)Ensembl
GRCm38.p6 Ensembl1081,268,172 - 81,273,246 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,105,375 - 81,107,668 (+)Ensembl
GRCm38.p6 Ensembl1081,269,541 - 81,271,834 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,102,829 - 81,104,020 (+)Ensembl
GRCm38.p6 Ensembl1081,266,995 - 81,268,186 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,108,581 - 81,109,070 (+)Ensembl
GRCm38.p6 Ensembl1081,272,747 - 81,273,236 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218297   ⟹   ENSMUSP00000151384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,108,452 - 81,109,069 (+)Ensembl
GRCm38.p6 Ensembl1081,272,618 - 81,273,235 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218742   ⟹   ENSMUSP00000151924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,104,055 - 81,105,053 (+)Ensembl
GRCm38.p6 Ensembl1081,268,221 - 81,269,219 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,106,938 - 81,108,167 (+)Ensembl
GRCm38.p6 Ensembl1081,271,104 - 81,272,333 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219304   ⟹   ENSMUSP00000151614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,104,019 - 81,105,121 (+)Ensembl
GRCm38.p6 Ensembl1081,268,185 - 81,269,287 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219460   ⟹   ENSMUSP00000151423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,106,840 - 81,108,234 (+)Ensembl
GRCm38.p6 Ensembl1081,271,006 - 81,272,400 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,106,903 - 81,108,151 (+)Ensembl
GRCm38.p6 Ensembl1081,271,069 - 81,272,317 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220297   ⟹   ENSMUSP00000151985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1081,102,794 - 81,109,070 (+)Ensembl
GRCm38.p6 Ensembl1081,266,960 - 81,273,236 (+)Ensembl
RefSeq Acc Id: NM_018758   ⟹   NP_061228
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,104,006 - 81,109,081 (+)NCBI
GRCm381081,268,172 - 81,273,247 (+)NCBI
MGSCv371080,730,917 - 80,735,992 (+)RGD
Celera1082,288,520 - 82,293,595 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513905   ⟹   XP_006513968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,102,799 - 81,109,070 (+)NCBI
GRCm381081,266,965 - 81,273,236 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513906   ⟹   XP_006513969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,103,628 - 81,109,070 (+)NCBI
GRCm381081,267,807 - 81,273,236 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513907   ⟹   XP_006513970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,102,828 - 81,109,070 (+)NCBI
GRCm381081,266,935 - 81,273,236 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155901   ⟹   XP_036011794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,103,629 - 81,109,070 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_061228   ⟸   NM_018758
- UniProtKB: Q3TDI1 (UniProtKB/Swiss-Prot),   Q8BR09 (UniProtKB/Swiss-Prot),   O88888 (UniProtKB/Swiss-Prot),   Q8BNM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513968   ⟸   XM_006513905
- Peptide Label: isoform X1
- UniProtKB: Q3TDI1 (UniProtKB/Swiss-Prot),   Q8BR09 (UniProtKB/Swiss-Prot),   O88888 (UniProtKB/Swiss-Prot),   Q8BNM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513970   ⟸   XM_006513907
- Peptide Label: isoform X2
- UniProtKB: Q8BNM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513969   ⟸   XM_006513906
- Peptide Label: isoform X1
- UniProtKB: Q3TDI1 (UniProtKB/Swiss-Prot),   Q8BR09 (UniProtKB/Swiss-Prot),   O88888 (UniProtKB/Swiss-Prot),   Q8BNM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000151924   ⟸   ENSMUST00000218742
RefSeq Acc Id: ENSMUSP00000151384   ⟸   ENSMUST00000218297
RefSeq Acc Id: ENSMUSP00000151423   ⟸   ENSMUST00000219460
RefSeq Acc Id: ENSMUSP00000151614   ⟸   ENSMUST00000219304
RefSeq Acc Id: ENSMUSP00000151985   ⟸   ENSMUST00000220297
RefSeq Acc Id: ENSMUSP00000050995   ⟸   ENSMUST00000057798
RefSeq Acc Id: XP_036011794   ⟸   XM_036155901
- Peptide Label: isoform X1
- UniProtKB: Q3TDI1 (UniProtKB/Swiss-Prot),   O88888 (UniProtKB/Swiss-Prot),   Q8BR09 (UniProtKB/Swiss-Prot),   Q8BNM8 (UniProtKB/TrEMBL)
Protein Domains
PDZ   PID

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88888-F1-model_v2 AlphaFold O88888 1-571 view protein structure

Promoters
RGD ID:6818995
Promoter ID:MM_KWN:4971
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_018758
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,730,741 - 80,731,241 (+)MPROMDB
RGD ID:6818993
Promoter ID:MM_KWN:4972
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000099453
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,731,814 - 80,732,314 (+)MPROMDB
RGD ID:6846687
Promoter ID:MM_ACW:5434
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain
Transcripts:APBA3.DSEP07,   APBA3.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,735,141 - 80,735,641 (+)MPROMDB
RGD ID:8672780
Promoter ID:EPDNEW_M14421
Type:initiation region
Name:Apba3_1
Description:Mus musculus amyloid beta precursor protein-binding, family A,member 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381081,268,250 - 81,268,310EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1888527 AgrOrtholog
Ensembl Genes ENSMUSG00000004931 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057798 ENTREZGENE
  ENSMUST00000057798.9 UniProtKB/Swiss-Prot
  ENSMUST00000218297.2 UniProtKB/TrEMBL
  ENSMUST00000218742.2 UniProtKB/TrEMBL
  ENSMUST00000219304.2 UniProtKB/TrEMBL
  ENSMUST00000219460.2 UniProtKB/TrEMBL
  ENSMUST00000220297 ENTREZGENE
  ENSMUST00000220297.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57267 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1888527 ENTREZGENE
NCBI Gene 57267 ENTREZGENE
PANTHER PTHR12345:SF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNTENIN RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Apba3 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6S0_MOUSE UniProtKB/TrEMBL
  A0A1W2P6Z9_MOUSE UniProtKB/TrEMBL
  A0A1W2P7G9_MOUSE UniProtKB/TrEMBL
  A0A1W2P837_MOUSE UniProtKB/TrEMBL
  APBA3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TDI1 ENTREZGENE
  Q3TER1_MOUSE UniProtKB/TrEMBL
  Q8BNM8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BR09 ENTREZGENE
UniProt Secondary Q3TDI1 UniProtKB/Swiss-Prot
  Q8BR09 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Apba3  amyloid beta precursor protein binding family A member 3  Apba3  amyloid beta (A4) precursor protein-binding, family A, member 3  Symbol and/or name change 5135510 APPROVED