GATA2 (GATA binding protein 2) - Rat Genome Database

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Gene: GATA2 (GATA binding protein 2) Homo sapiens
Analyze
Symbol: GATA2
Name: GATA binding protein 2
RGD ID: 734291
HGNC Page HGNC
Description: Enables several functions, including C2H2 zinc finger domain binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and chromatin binding activity. Involved in several processes, including negative regulation of endothelial cell apoptotic process; positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and regulation of gene expression. Acts upstream of or within negative regulation of Notch signaling pathway; negative regulation of neural precursor cell proliferation; and positive regulation of angiogenesis. Located in cytoplasm and nucleoplasm. Implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Biomarker of acute myeloid leukemia; aplastic anemia; clear cell renal cell carcinoma; immunodeficiency 21; and myelodysplastic syndrome.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: DCML; endothelial transcription factor GATA-2; FLJ45948; GATA-binding protein 2; IMD21; MGC2306; MONOMAC; NFE1B
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3128,479,427 - 128,493,201 (-)EnsemblGRCh38hg38GRCh38
GRCh383128,479,422 - 128,493,201 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373128,198,265 - 128,212,044 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363129,680,960 - 129,694,718 (-)NCBINCBI36hg18NCBI36
Build 343129,680,969 - 129,694,726NCBI
Celera3126,626,234 - 126,639,997 (-)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3125,582,307 - 125,596,070 (-)NCBIHuRef
CHM1_13128,161,207 - 128,175,078 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-chloro-7-iodoquinolin-8-ol  (EXP)
5-fluorouracil  (EXP)
Aflatoxin B2 alpha  (EXP)
all-trans-retinoic acid  (EXP,ISO)
aluminium sulfate (anhydrous)  (EXP)
amiodarone  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antimycin A  (EXP)
aristolochic acid  (EXP)
arsenous acid  (EXP)
azoxystrobin  (EXP)
benzene-1,2,4-triol  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (EXP)
butyric acid  (EXP)
calcitriol  (EXP)
carbon nanotube  (ISO)
Chebulinic acid  (EXP)
chloroprene  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
chrysene  (ISO)
cisplatin  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
curcumin  (EXP)
cypermethrin  (ISO)
deguelin  (EXP)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP)
dibenz[a,h]anthracene  (ISO)
dicrotophos  (EXP)
digitonin  (EXP)
disulfiram  (EXP)
dorsomorphin  (EXP)
doxorubicin  (EXP)
Enterolactone  (EXP)
entinostat  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
furan  (ISO)
hemin  (EXP)
hydrogen peroxide  (EXP)
hydroquinone  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
Licochalcone B  (EXP)
lipopolysaccharide  (ISO)
manumycin A  (EXP)
mercury dibromide  (EXP)
mercury dichloride  (EXP)
methapyrilene  (EXP)
methylisothiazolinone  (EXP)
methylmercury chloride  (EXP)
nicotine  (EXP)
nitrofen  (ISO)
p-chloromercuribenzoic acid  (EXP)
panobinostat  (EXP)
paracetamol  (ISO)
phenol  (EXP)
phenylmercury acetate  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pomalidomide  (EXP)
potassium chromate  (EXP)
progesterone  (ISO)
pyrimidifen  (EXP)
raloxifene  (EXP)
SB 203580  (ISO)
SB 431542  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
tamibarotene  (EXP)
tamoxifen  (EXP,ISO)
tebufenpyrad  (EXP)
Tellimagrandin I  (EXP)
tetracycline  (ISO)
tetraphene  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
toluene  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triclosan  (EXP)
triptonide  (ISO)
troglitazone  (EXP)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (IEA,ISO)
cell differentiation in hindbrain  (IEA,ISO)
cell fate commitment  (IBA)
cell fate determination  (IEA,ISO)
cell maturation  (IEA,ISO)
central nervous system neuron development  (IEA,ISO)
cochlea development  (IEA,ISO)
commitment of neuronal cell to specific neuron type in forebrain  (IEA,ISO)
definitive hemopoiesis  (IEA,ISO)
embryonic placenta development  (IEA,ISO)
eosinophil fate commitment  (IDA)
GABAergic neuron differentiation  (IEA,ISO)
hemopoiesis  (IEA)
homeostasis of number of cells within a tissue  (IEA,ISO)
inner ear morphogenesis  (IEA,ISO)
negative regulation of endothelial cell apoptotic process  (IMP)
negative regulation of fat cell differentiation  (IMP,ISO)
negative regulation of fat cell proliferation  (IMP)
negative regulation of gene expression  (IMP)
negative regulation of macrophage differentiation  (IEA,ISO)
negative regulation of myeloid cell differentiation  (ISO)
negative regulation of neural precursor cell proliferation  (IDA)
negative regulation of Notch signaling pathway  (IDA)
negative regulation of transcription by RNA polymerase II  (IBA,ISO)
neuron differentiation  (ISO)
neuron fate commitment  (ISO)
neuron migration  (IEA,ISO)
phagocytosis  (IEA)
pituitary gland development  (IEA,ISO)
positive regulation of angiogenesis  (IBA,IDA,IMP)
positive regulation of blood vessel endothelial cell migration  (IMP)
positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  (IMP)
positive regulation of cell migration involved in sprouting angiogenesis  (IMP)
positive regulation of cytosolic calcium ion concentration  (IEA,ISO)
positive regulation of erythrocyte differentiation  (IEA,ISO)
positive regulation of gene expression  (IMP)
positive regulation of mast cell degranulation  (IEA,ISO)
positive regulation of megakaryocyte differentiation  (IEA,ISO)
positive regulation of neuron differentiation  (IEA,ISO)
positive regulation of phagocytosis  (ISS)
positive regulation of phagocytosis, engulfment  (IEA,ISO)
positive regulation of pri-miRNA transcription by RNA polymerase II  (IBA,IDA,IGI)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,IMP,ISO)
regulation of forebrain neuron differentiation  (IEA,ISO)
regulation of histone acetylation  (IEA,ISO)
regulation of primitive erythrocyte differentiation  (IEA,ISO)
regulation of transcription by RNA polymerase II  (IEA)
response to lipid  (IEA,ISO)
semicircular canal development  (IEA,ISO)
somatic stem cell population maintenance  (IEA,ISO)
urogenital system development  (IEA,ISO)
vascular wound healing  (IMP)
ventral spinal cord interneuron differentiation  (IEA,ISO)

Cellular Component
cytoplasm  (IDA)
nucleoplasm  (IDA,TAS)
nucleus  (IDA,IEA,ISO)
transcription regulator complex  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Celton M, etal., Leukemia. 2014 Aug;28(8):1617-26. doi: 10.1038/leu.2014.67. Epub 2014 Feb 11.
2. Choi M, etal., PLoS One. 2014 Oct 23;9(10):e109253. doi: 10.1371/journal.pone.0109253. eCollection 2014.
3. Fadilah SA, etal., Leukemia. 2002 Aug;16(8):1563-5.
4. Fujimaki S, etal., Br J Haematol. 2001 Apr;113(1):52-7.
5. GOA_HUMAN data from the GO Consortium
6. Hou HA, etal., Ann Hematol. 2015 Feb;94(2):211-21. doi: 10.1007/s00277-014-2208-8. Epub 2014 Sep 21.
7. Hsu AP, etal., Blood. 2011 Sep 8;118(10):2653-5. doi: 10.1182/blood-2011-05-356352. Epub 2011 Jun 13.
8. Lim KC, etal., J Clin Invest. 2012 Oct;122(10):3705-17. doi: 10.1172/JCI61619. Epub 2012 Sep 10.
9. Luesink M, etal., Blood. 2012 Sep 6;120(10):2064-75. doi: 10.1182/blood-2011-12-397083. Epub 2012 Jul 11.
10. OMIM Disease Annotation Pipeline
11. Online Mendelian Inheritance in Man, OMIM (TM).
12. Peters I, etal., Target Oncol. 2015 Jun;10(2):267-75. doi: 10.1007/s11523-014-0335-8. Epub 2014 Sep 19.
13. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. RGD automated import pipeline for gene-chemical interactions
16. RGD automated import pipeline for human HPO-to-gene-to-disease annotations
17. Tang X, etal., Biotechniques. 2006 Jun;40(6):759-63.
18. Zhang SJ, etal., Leuk Res. 2009 Aug;33(8):1141-3. doi: 10.1016/j.leukres.2009.02.025. Epub 2009 Mar 21.
Additional References at PubMed
PMID:1370462   PMID:1563207   PMID:1714909   PMID:7519472   PMID:7541039   PMID:7568177   PMID:7876160   PMID:8078582   PMID:8504932   PMID:8972903   PMID:9517987   PMID:10364157  
PMID:10367888   PMID:10411939   PMID:10731672   PMID:10873593   PMID:10938104   PMID:11278891   PMID:11567998   PMID:11787775   PMID:11877047   PMID:11964310   PMID:12045236   PMID:12073612  
PMID:12406094   PMID:12432220   PMID:12477932   PMID:12483298   PMID:12646178   PMID:12750312   PMID:14702039   PMID:15001660   PMID:15016828   PMID:15254248   PMID:15328158   PMID:15489334  
PMID:15632071   PMID:15659347   PMID:15673499   PMID:15837948   PMID:16153155   PMID:16344560   PMID:16396960   PMID:16607277   PMID:16672344   PMID:16934006   PMID:16960339   PMID:17095623  
PMID:17255359   PMID:17347142   PMID:17654061   PMID:18029348   PMID:18078130   PMID:18250304   PMID:18308945   PMID:18452556   PMID:18550858   PMID:18720385   PMID:18849568   PMID:19097174  
PMID:19168794   PMID:19198610   PMID:19212333   PMID:19242469   PMID:19274049   PMID:19322201   PMID:19323994   PMID:19453261   PMID:19522008   PMID:19528235   PMID:19684615   PMID:19706030  
PMID:19714312   PMID:19772889   PMID:19860791   PMID:19864173   PMID:19885677   PMID:19913121   PMID:19941826   PMID:20206639   PMID:20211142   PMID:20363750   PMID:20628086   PMID:20634887  
PMID:20705609   PMID:20838640   PMID:20963938   PMID:21297973   PMID:21571218   PMID:21666600   PMID:21738478   PMID:21738480   PMID:21765025   PMID:21788589   PMID:21808000   PMID:21816832  
PMID:21873635   PMID:21892158   PMID:21892162   PMID:21904383   PMID:21988832   PMID:22021428   PMID:22147895   PMID:22271902   PMID:22284968   PMID:22499991   PMID:22541434   PMID:22649106  
PMID:22814295   PMID:22865859   PMID:22942019   PMID:22996659   PMID:23028422   PMID:23223431   PMID:23322776   PMID:23327922   PMID:23333304   PMID:23365437   PMID:23365458   PMID:23423786  
PMID:23502222   PMID:23521373   PMID:23560626   PMID:23563236   PMID:23887938   PMID:23892628   PMID:24033149   PMID:24077845   PMID:24227816   PMID:24345756   PMID:24448395   PMID:24457600  
PMID:24498120   PMID:24509415   PMID:24603652   PMID:24614497   PMID:24639354   PMID:24703711   PMID:24703906   PMID:24754962   PMID:24786211   PMID:24807155   PMID:25056917   PMID:25092790  
PMID:25140787   PMID:25150255   PMID:25359990   PMID:25416956   PMID:25489091   PMID:25509816   PMID:25611491   PMID:25624456   PMID:25670080   PMID:25670854   PMID:25676417   PMID:25707267  
PMID:25707769   PMID:25810277   PMID:25907033   PMID:26161748   PMID:26214525   PMID:26264606   PMID:26287967   PMID:26325290   PMID:26710799   PMID:26751772   PMID:26766440   PMID:26767875  
PMID:27013649   PMID:27157394   PMID:27169477   PMID:27375010   PMID:27389056   PMID:27416790   PMID:27460045   PMID:27481672   PMID:27528231   PMID:27545880   PMID:27609421   PMID:27617961  
PMID:27651453   PMID:27780851   PMID:27783953   PMID:28038451   PMID:28093780   PMID:28114350   PMID:28179280   PMID:28209719   PMID:28271814   PMID:28373026   PMID:28381408   PMID:28473536  
PMID:28514442   PMID:28569748   PMID:28642594   PMID:28752392   PMID:28937943   PMID:29106391   PMID:29156497   PMID:29217535   PMID:29275211   PMID:29532200   PMID:29576527   PMID:29666442  
PMID:29724903   PMID:29861167   PMID:30021884   PMID:30030275   PMID:30047422   PMID:30190467   PMID:30232126   PMID:30245028   PMID:30463901   PMID:30478525   PMID:30564229   PMID:30578959  
PMID:30659233   PMID:30710465   PMID:30714451   PMID:30804502   PMID:30833300   PMID:30862715   PMID:31035956   PMID:31246134   PMID:31296150   PMID:31340620   PMID:31402335   PMID:31434974  
PMID:31468074   PMID:31501863   PMID:31515488   PMID:31582413   PMID:31591264   PMID:31785092   PMID:31933136   PMID:32205587   PMID:32250729   PMID:32296183   PMID:32330454   PMID:32335672  
PMID:32430494   PMID:32555368   PMID:32556109   PMID:32558139   PMID:32593672   PMID:32694731   PMID:32770553   PMID:32865708   PMID:32960960   PMID:33193444   PMID:33226740   PMID:33513878  
PMID:33570623   PMID:33759087   PMID:33831168   PMID:33856550   PMID:33957466   PMID:33961781   PMID:34040617   PMID:34348000  


Genomics

Comparative Map Data
GATA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3128,479,427 - 128,493,201 (-)EnsemblGRCh38hg38GRCh38
GRCh383128,479,422 - 128,493,201 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373128,198,265 - 128,212,044 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363129,680,960 - 129,694,718 (-)NCBINCBI36hg18NCBI36
Build 343129,680,969 - 129,694,726NCBI
Celera3126,626,234 - 126,639,997 (-)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3125,582,307 - 125,596,070 (-)NCBIHuRef
CHM1_13128,161,207 - 128,175,078 (-)NCBICHM1_1
Gata2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,170,873 - 88,184,014 (+)NCBIGRCm39mm39
GRCm39 Ensembl688,170,873 - 88,184,014 (+)Ensembl
GRCm38688,193,891 - 88,207,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,193,891 - 88,207,032 (+)EnsemblGRCm38mm10GRCm38
MGSCv37688,148,658 - 88,157,026 (+)NCBIGRCm37mm9NCBIm37
MGSCv36688,164,309 - 88,172,670 (+)NCBImm8
Celera690,136,051 - 90,144,243 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.2NCBI
Gata2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,654,205 - 120,667,763 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4120,658,986 - 120,667,761 (+)Ensembl
Rnor_6.04120,129,028 - 120,142,490 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4120,133,713 - 120,142,488 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,369,926 - 185,383,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,279,753 - 122,288,528 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14122,524,233 - 122,533,009 (+)NCBI
Celera4109,615,354 - 109,624,129 (+)NCBICelera
Cytogenetic Map4q34NCBI
Gata2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542915,327,113 - 15,336,460 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542915,326,551 - 15,334,774 (+)NCBIChiLan1.0ChiLan1.0
GATA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13132,890,508 - 132,899,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3132,890,508 - 132,899,035 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03125,526,537 - 125,535,649 (-)NCBIMhudiblu_PPA_v0panPan3
GATA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,472,251 - 2,488,380 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,473,912 - 2,480,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,508,307 - 2,517,105 (-)NCBI
ROS_Cfam_1.0202,492,701 - 2,501,504 (-)NCBI
UMICH_Zoey_3.1202,213,473 - 2,222,266 (-)NCBI
UNSW_CanFamBas_1.0202,540,074 - 2,548,847 (-)NCBI
UU_Cfam_GSD_1.0202,500,417 - 2,509,217 (-)NCBI
Gata2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,364,390 - 20,372,921 (+)NCBI
SpeTri2.0NW_004936798406,258 - 414,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,984,063 - 71,997,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,981,139 - 71,997,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,606,930 - 79,613,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GATA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,549,112 - 52,562,911 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,555,738 - 52,562,909 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041113,794,573 - 113,808,643 (-)NCBIVero_WHO_p1.0
Gata2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624961147,685 - 155,614 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC58532P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373128,200,030 - 128,200,773UniSTSGRCh37
Build 363129,682,720 - 129,683,463RGDNCBI36
Celera3126,627,999 - 126,628,742RGD
Cytogenetic Map3q21.3UniSTS
HuRef3125,584,072 - 125,584,815UniSTS
GATA2_662  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373128,198,266 - 128,198,907UniSTSGRCh37
Build 363129,680,956 - 129,681,597RGDNCBI36
Celera3126,626,235 - 126,626,876RGD
HuRef3125,582,308 - 125,582,949UniSTS
SHGC-77315  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373128,198,435 - 128,198,553UniSTSGRCh37
Build 363129,681,125 - 129,681,243RGDNCBI36
Celera3126,626,404 - 126,626,522RGD
Cytogenetic Map3q21.3UniSTS
HuRef3125,582,477 - 125,582,595UniSTS
TNG Radiation Hybrid Map238813.0UniSTS
GeneMap99-GB4 RH Map3452.72UniSTS
D3S3103  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373128,199,345 - 128,199,520UniSTSGRCh37
Build 363129,682,035 - 129,682,210RGDNCBI36
Celera3126,627,314 - 126,627,489RGD
Cytogenetic Map3q21.3UniSTS
HuRef3125,583,387 - 125,583,562UniSTS
TNG Radiation Hybrid Map238809.0UniSTS
GeneMap99-GB4 RH Map3452.72UniSTS
Whitehead-RH Map3550.7UniSTS
NCBI RH Map31089.5UniSTS
RH76244  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3q21.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2244
Count of miRNA genes:901
Interacting mature miRNAs:1068
Transcripts:ENST00000341105, ENST00000430265, ENST00000487848, ENST00000489987, ENST00000492608, ENST00000498200
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1
Medium 1030 514 645 36 331 18 1844 766 754 220 774 1154 26 1051 1017 4
Low 1380 2205 946 462 803 322 2406 1421 2868 187 663 438 144 153 1769 1
Below cutoff 13 259 129 124 418 124 97 6 88 11 13 12 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC080005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF169253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI524325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA636256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA837371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JC009144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT583880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU892678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M68891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M77810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S72871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000341105   ⟹   ENSP00000345681
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3128,479,427 - 128,493,201 (-)Ensembl
RefSeq Acc Id: ENST00000430265   ⟹   ENSP00000400259
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3128,480,146 - 128,487,916 (-)Ensembl
RefSeq Acc Id: ENST00000487848   ⟹   ENSP00000417074
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3128,481,019 - 128,488,530 (-)Ensembl
RefSeq Acc Id: ENST00000489987
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3128,480,146 - 128,482,078 (-)Ensembl
RefSeq Acc Id: ENST00000492608   ⟹   ENSP00000418132
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3128,486,148 - 128,490,648 (-)Ensembl
RefSeq Acc Id: ENST00000498200   ⟹   ENSP00000419532
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3128,487,008 - 128,493,173 (-)Ensembl
RefSeq Acc Id: NM_001145661   ⟹   NP_001139133
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383128,479,427 - 128,488,530 (-)NCBI
GRCh373128,198,265 - 128,212,030 (-)ENTREZGENE
HuRef3125,582,307 - 125,596,070 (-)ENTREZGENE
CHM1_13128,161,207 - 128,170,314 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001145662   ⟹   NP_001139134
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383128,479,422 - 128,487,921 (-)NCBI
GRCh373128,198,265 - 128,212,030 (-)ENTREZGENE
HuRef3125,582,307 - 125,596,070 (-)ENTREZGENE
CHM1_13128,161,207 - 128,169,705 (-)NCBI
Sequence: