Ptprn (protein tyrosine phosphatase, receptor type, N) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ptprn (protein tyrosine phosphatase, receptor type, N) Mus musculus
Analyze
Symbol: Ptprn
Name: protein tyrosine phosphatase, receptor type, N
RGD ID: 734154
MGI Page MGI
Description: Predicted to enable GTPase binding activity; spectrin binding activity; and ubiquitin-like protein ligase binding activity. Involved in insulin secretion involved in cellular response to glucose stimulus; luteinization; and positive regulation of type B pancreatic cell proliferation. Predicted to be located in several cellular components, including axon terminus; neuronal cell body; and secretory granule. Predicted to colocalize with Golgi apparatus; endosome; and plasma membrane. Is expressed in lens vesicle and nervous system. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PTPRN (protein tyrosine phosphatase receptor type N).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: IA; IA-2; KIAA4064; mIA-A; mKIAA4064; protein tyrosine phosphatase, receptor-type, N; PTP IA-2; R-PTP-N; receptor-type tyrosine-protein phosphatase-like N
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,223,679 - 75,241,437 (-)NCBIGRCm39mm39
GRCm39 Ensembl175,223,671 - 75,241,146 (-)Ensembl
GRCm38175,247,035 - 75,264,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,247,027 - 75,264,502 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,243,616 - 75,260,783 (-)NCBIGRCm37mm9NCBIm37
MGSCv36175,130,189 - 75,147,297 (-)NCBImm8
Celera175,737,937 - 75,755,020 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arsenite(3-)  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
choline  (EXP)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
finasteride  (ISO)
fipronil  (ISO)
folic acid  (EXP)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
irinotecan  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
methoxychlor  (ISO)
miconazole  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
orphenadrine  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pravastatin  (EXP,ISO)
propanal  (ISO)
quercetin  (ISO)
rotenone  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
triptonide  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
WIN 55212-2  (EXP)
zaragozic acid A  (EXP,ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7832766   PMID:7980563   PMID:8526904   PMID:8878556   PMID:8933284   PMID:9383296   PMID:9858807   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11126414   PMID:11206415  
PMID:11217851   PMID:11471062   PMID:11600216   PMID:12031972   PMID:12364328   PMID:12436047   PMID:12477932   PMID:14614561   PMID:16141072   PMID:16141073   PMID:16269463   PMID:16306340  
PMID:16418280   PMID:16622421   PMID:17560335   PMID:17611635   PMID:18178618   PMID:18287559   PMID:18310453   PMID:18824546   PMID:19019914   PMID:19233214   PMID:19361477   PMID:21267068  
PMID:21732083   PMID:22323457   PMID:22785238   PMID:23595248   PMID:24154525   PMID:24662847   PMID:24692514   PMID:25861885   PMID:26141787   PMID:26148972   PMID:29031500   PMID:31065682  


Genomics

Comparative Map Data
Ptprn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,223,679 - 75,241,437 (-)NCBIGRCm39mm39
GRCm39 Ensembl175,223,671 - 75,241,146 (-)Ensembl
GRCm38175,247,035 - 75,264,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,247,027 - 75,264,502 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,243,616 - 75,260,783 (-)NCBIGRCm37mm9NCBIm37
MGSCv36175,130,189 - 75,147,297 (-)NCBImm8
Celera175,737,937 - 75,755,020 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.64NCBI
PTPRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2219,289,623 - 219,309,648 (-)EnsemblGRCh38hg38GRCh38
GRCh382219,289,623 - 219,309,401 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372220,154,345 - 220,174,123 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,862,589 - 219,882,387 (-)NCBINCBI36hg18NCBI36
Build 342219,979,851 - 219,999,648NCBI
Celera2213,924,192 - 213,944,148 (-)NCBI
Cytogenetic Map2q35NCBI
HuRef2212,007,432 - 212,027,331 (-)NCBIHuRef
CHM1_12220,160,193 - 220,180,139 (-)NCBICHM1_1
Ptprn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2976,741,010 - 76,756,704 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl976,741,016 - 76,756,190 (-)Ensembl
Rnor_6.0982,446,626 - 82,462,314 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,446,633 - 82,461,903 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,215,889 - 82,231,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,528,095 - 74,542,756 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1974,675,076 - 74,689,738 (-)NCBI
Celera974,311,913 - 74,326,515 (-)NCBICelera
Cytogenetic Map9q33NCBI
Ptprn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,126,416 - 14,145,347 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,126,416 - 14,145,347 (+)NCBIChiLan1.0ChiLan1.0
PTPRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B225,138,283 - 225,158,118 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,138,887 - 225,206,700 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B106,547,156 - 106,567,056 (-)NCBIMhudiblu_PPA_v0panPan3
PTPRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,835,590 - 25,854,050 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,836,118 - 25,869,931 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,661,448 - 26,679,881 (-)NCBI
ROS_Cfam_1.03725,850,814 - 25,869,258 (-)NCBI
ROS_Cfam_1.0 Ensembl3725,849,713 - 25,869,231 (-)Ensembl
UMICH_Zoey_3.13725,755,175 - 25,773,586 (-)NCBI
UNSW_CanFamBas_1.03725,690,528 - 25,708,945 (-)NCBI
UU_Cfam_GSD_1.03725,711,218 - 25,729,647 (-)NCBI
Ptprn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,355,937 - 175,374,833 (-)NCBI
SpeTri2.0NW_0049365691,698,718 - 1,717,639 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,329,288 - 121,349,276 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,329,284 - 121,349,228 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,364,686 - 134,384,609 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,196,508 - 105,216,665 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,196,505 - 105,216,525 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604094,181,166 - 94,200,998 (+)NCBIVero_WHO_p1.0
Ptprn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248235,710,669 - 5,734,739 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
X74438  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,247,188 - 75,247,375UniSTSGRCm38
MGSCv37175,243,763 - 75,243,950UniSTSGRCm37
Celera175,738,084 - 75,738,271UniSTS
Cytogenetic Map1C3UniSTS
cM Map141.0UniSTS
Whitehead/MRC_RH11090.5UniSTS
Whitehead_YAC1 UniSTS
MARC_8095-8096:996688286:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,252,336 - 75,253,046UniSTSGRCm38
MGSCv37175,248,911 - 75,249,621UniSTSGRCm37
Celera175,743,216 - 75,743,926UniSTS
Cytogenetic Map1C3UniSTS
cM Map141.0UniSTS
PTPRN_1350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,247,050 - 75,247,622UniSTSGRCm38
MGSCv37175,243,625 - 75,244,197UniSTSGRCm37
Celera175,737,946 - 75,738,518UniSTS
Cytogenetic Map1C3UniSTS
cM Map141.0UniSTS
X74438  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,247,044 - 75,247,144UniSTSGRCm38
MGSCv37175,243,619 - 75,243,719UniSTSGRCm37
Celera175,737,940 - 75,738,040UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11090.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4222050876220508Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14289887276899008Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14590759679907723Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14681553180815680Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14681553180815680Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14731073581310854Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14884984782850051Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14884984782850051Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14885318682853326Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15085105784851057Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5138244685382446Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15593578989935898Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15622705590227201Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15622705590227201Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15668776390687918Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15668776390687918Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15790219291902192Mouse
14747009Manh49_mmandible shape 49 (mouse)15790219291902192Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15795281891952921Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15795281891952921Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15795281891952921Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15857254792572799Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15857254792572799Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162907596120601949Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16584984788568379Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167300000129800000Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6803218686307305Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170205811104211835Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7158552078206507Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173227055108910684Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73687970107688108Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173687970107688108Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17410000081800000Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74477076148839837Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174952818133363199Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:288
Count of miRNA genes:218
Interacting mature miRNAs:239
Transcripts:ENSMUST00000027404
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF288816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB869850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM950464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ832283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U11812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X74438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000027404   ⟹   ENSMUSP00000027404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,223,671 - 75,240,857 (-)Ensembl
GRCm38.p6 Ensembl175,247,027 - 75,264,213 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185849   ⟹   ENSMUSP00000140062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,235,203 - 75,241,146 (-)Ensembl
GRCm38.p6 Ensembl175,258,559 - 75,264,502 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186178   ⟹   ENSMUSP00000139925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,235,135 - 75,240,551 (-)Ensembl
GRCm38.p6 Ensembl175,258,491 - 75,263,907 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187216
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,233,502 - 75,234,641 (-)Ensembl
GRCm38.p6 Ensembl175,256,858 - 75,257,997 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188401
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,235,227 - 75,240,852 (-)Ensembl
GRCm38.p6 Ensembl175,258,583 - 75,264,208 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189769   ⟹   ENSMUSP00000140168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,235,135 - 75,240,694 (-)Ensembl
GRCm38.p6 Ensembl175,258,491 - 75,264,050 (-)Ensembl
RefSeq Acc Id: NM_001359281   ⟹   NP_001346210
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,685 - 75,240,415 (-)NCBI
GRCm38175,247,041 - 75,263,771 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008985   ⟹   NP_033011
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,685 - 75,240,852 (-)NCBI
GRCm38175,247,041 - 75,264,208 (-)NCBI
MGSCv37175,243,616 - 75,260,783 (-)RGD
Celera175,737,937 - 75,755,020 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496444   ⟹   XP_006496507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,679 - 75,240,775 (-)NCBI
GRCm38175,247,035 - 75,264,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496445   ⟹   XP_006496508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,679 - 75,241,437 (-)NCBI
GRCm38175,247,035 - 75,264,497 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238677   ⟹   XP_011236979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,679 - 75,241,039 (-)NCBI
GRCm38175,247,035 - 75,264,395 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162795   ⟹   XP_036018688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,679 - 75,240,903 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162799   ⟹   XP_036018692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,223,679 - 75,240,852 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033011   ⟸   NM_008985
- Peptide Label: isoform 1 precursor
- UniProtKB: A6MDD2 (UniProtKB/TrEMBL),   Q3UTI6 (UniProtKB/TrEMBL),   Q6NVE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496508   ⟸   XM_006496445
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006496507   ⟸   XM_006496444
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011236979   ⟸   XM_011238677
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001346210   ⟸   NM_001359281
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000027404   ⟸   ENSMUST00000027404
RefSeq Acc Id: ENSMUSP00000139925   ⟸   ENSMUST00000186178
RefSeq Acc Id: ENSMUSP00000140062   ⟸   ENSMUST00000185849
RefSeq Acc Id: ENSMUSP00000140168   ⟸   ENSMUST00000189769
RefSeq Acc Id: XP_036018688   ⟸   XM_036162795
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036018692   ⟸   XM_036162799
- Peptide Label: isoform X3
Promoters
RGD ID:6818336
Promoter ID:MM_KWN:1226
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_008985,   UC007BOR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36175,260,676 - 75,261,176 (-)MPROMDB
RGD ID:6874148
Promoter ID:EPDNEW_M525
Type:initiation region
Name:Ptprn_1
Description:Mus musculus protein tyrosine phosphatase, receptor type, N ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38175,264,184 - 75,264,244EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102765 AgrOrtholog
Ensembl Genes ENSMUSG00000026204 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000027404 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000139925 UniProtKB/TrEMBL
  ENSMUSP00000140062 UniProtKB/TrEMBL
  ENSMUSP00000140168 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027404 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000185849 UniProtKB/TrEMBL
  ENSMUST00000186178 UniProtKB/TrEMBL
  ENSMUST00000189769 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.2470 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IA-2/IA-2_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Receptor_IA-2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Receptor_IA-2_ectodomain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RESP18_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102765 ENTREZGENE
NCBI Gene 19275 ENTREZGENE
PANTHER PTHR46106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Receptor_IA-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RESP18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptprn PhenoGen
PRINTS PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPU7_MOUSE UniProtKB/TrEMBL
  A0A087WQ67_MOUSE UniProtKB/TrEMBL
  A0A087WQF2_MOUSE UniProtKB/TrEMBL
  A6MDD2 ENTREZGENE, UniProtKB/TrEMBL
  PTPRN_MOUSE UniProtKB/Swiss-Prot
  Q3UTI6 ENTREZGENE, UniProtKB/TrEMBL
  Q5DTQ3_MOUSE UniProtKB/TrEMBL
  Q60673 ENTREZGENE
  Q64500_MOUSE UniProtKB/TrEMBL
  Q6NVE2 ENTREZGENE, UniProtKB/TrEMBL
  Q6P3E6_MOUSE UniProtKB/TrEMBL
  Q925J6_MOUSE UniProtKB/TrEMBL
  Q925J7_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9Q746 UniProtKB/Swiss-Prot
  Q62129 UniProtKB/Swiss-Prot