Gabbr1 (gamma-aminobutyric acid (GABA) B receptor, 1) - Rat Genome Database

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Gene: Gabbr1 (gamma-aminobutyric acid (GABA) B receptor, 1) Mus musculus
Analyze
Symbol: Gabbr1
Name: gamma-aminobutyric acid (GABA) B receptor, 1
RGD ID: 734109
MGI Page MGI
Description: Enables G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential. Acts upstream of or within gamma-aminobutyric acid signaling pathway. Located in several cellular components, including GABA-ergic synapse; Schaffer collateral - CA1 synapse; and synaptic membrane. Part of G protein-coupled receptor dimeric complex. Is expressed in several structures, including central nervous system; eye; genitourinary system; gut; and respiratory system. Orthologous to human GABBR1 (gamma-aminobutyric acid type B receptor subunit 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: bM573K1.1; bM573K1.1.1 (gamma-aminobutyric acid (GABA) B receptor, 1a); GABA; GABA-B receptor 1; GABA-B-R1; GABA-BR1; GABA-BR1b receptor; GABAB1; GABAbR1; gamma-aminobutyric acid (GABA-B) receptor, 1; gamma-aminobutyric acid type B receptor subunit 1; gb1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,356,858 - 37,385,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,356,858 - 37,385,959 (+)Ensembl
GRCm381737,045,966 - 37,074,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,045,966 - 37,075,067 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,182,911 - 37,211,250 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,654,124 - 36,682,342 (+)NCBImm8
Celera1740,469,514 - 40,497,873 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2,2-trifluoroethanol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dinitrotoluene  (ISO)
3,3-diphenyl-N-(1-phenylethyl)-1-propanamine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
baclofen  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
calcidiol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
chaetocin  (ISO)
chloral hydrate  (ISO)
Chloralose  (ISO)
chlorobutanol  (ISO)
choline  (ISO)
clozapine  (EXP)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazepam  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enflurane  (ISO)
ethanol  (EXP)
ether  (ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (ISO)
fenvalerate  (ISO)
gabapentin  (ISO)
gamma-aminobutyric acid  (ISO)
glyphosate  (ISO)
hexachlorophene  (EXP)
isoflurane  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP)
linalool  (ISO)
methoxyflurane  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP,ISO)
phencyclidine  (EXP)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
scopolamine  (ISO)
sevoflurane  (ISO)
T-2 toxin  (ISO)
tebufenpyrad  (ISO)
tert-butanol  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tribromoethanol  (ISO)
trichloroethene  (ISO)
trifluoperazine  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal action potential  (IAGP)
abnormal axon morphology  (IAGP)
abnormal body temperature homeostasis  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal conditioned taste aversion behavior  (IAGP)
abnormal depression-related behavior  (IAGP)
abnormal emotion/affect behavior  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal gait  (IAGP)
abnormal habituation to a new environment  (IAGP)
abnormal inhibitory postsynaptic currents  (IAGP)
abnormal inhibitory postsynaptic potential  (IAGP)
abnormal lumbar dorsal root ganglion morphology  (IAGP)
abnormal myelin sheath morphology  (IAGP)
abnormal myelination  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal object recognition memory  (IAGP)
abnormal posture  (IEA)
abnormal sciatic nerve morphology  (IAGP)
abnormal sleep pattern  (IAGP)
abnormal somatic nervous system morphology  (IAGP)
abnormal synaptic transmission  (IAGP)
absence seizures  (IAGP)
absent subcutaneous adipose tissue  (IEA)
audiogenic seizures  (IAGP)
clonic seizures  (IAGP)
decreased body weight  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased thermal nociceptive threshold  (IAGP)
dehydration  (IEA)
hyperactivity  (IAGP)
hyperresponsive to tactile stimuli  (IAGP)
hypoactivity  (IEA)
hyporesponsive to tactile stimuli  (IAGP)
impaired behavioral response to xenobiotic  (IAGP)
impaired passive avoidance behavior  (IAGP)
increased anxiety-related response  (IAGP)
increased circulating luteinizing hormone level  (IAGP)
increased circulating prolactin level  (IAGP)
increased prepulse inhibition  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IEA)
prolonged estrus  (IAGP)
reduced female fertility  (IAGP)
reduced long term potentiation  (IAGP)
seizures  (IAGP)
short proestrus  (IAGP)
sporadic seizures  (IAGP)
tonic-clonic seizures  (IAGP)
weakness  (IEA)
References

Additional References at PubMed
PMID:9872744   PMID:10075644   PMID:10349636   PMID:10773016   PMID:11042159   PMID:11076861   PMID:11304760   PMID:11306808   PMID:11414794   PMID:11431694   PMID:11498050   PMID:12054677  
PMID:12115679   PMID:12138019   PMID:12452899   PMID:12477932   PMID:12520002   PMID:12904583   PMID:12970075   PMID:14610273   PMID:14998930   PMID:15013631   PMID:15226823   PMID:15240800  
PMID:15266647   PMID:15305362   PMID:15321743   PMID:15451404   PMID:15482257   PMID:15489334   PMID:15493018   PMID:15706241   PMID:15937080   PMID:15939083   PMID:15968089   PMID:16141072  
PMID:16141073   PMID:16391514   PMID:16452087   PMID:16602821   PMID:16606363   PMID:16624949   PMID:16627567   PMID:16682806   PMID:16701209   PMID:16701210   PMID:16819521   PMID:16928868  
PMID:17114649   PMID:17144904   PMID:17171558   PMID:17244351   PMID:17498817   PMID:17532644   PMID:17615148   PMID:17881477   PMID:17971510   PMID:18206390   PMID:18287559   PMID:18302163  
PMID:18665320   PMID:18765663   PMID:18799693   PMID:18925381   PMID:18985723   PMID:19193888   PMID:19246384   PMID:19324000   PMID:19435582   PMID:19446011   PMID:19545402   PMID:19558451  
PMID:19590495   PMID:19603512   PMID:19674089   PMID:19759312   PMID:20009027   PMID:20400944   PMID:20406808   PMID:20643921   PMID:20962240   PMID:21144999   PMID:21149722   PMID:21160134  
PMID:21236282   PMID:21267068   PMID:21552208   PMID:21655283   PMID:21677750   PMID:21828041   PMID:21852427   PMID:21873635   PMID:21876150   PMID:22180742   PMID:22363012   PMID:22504960  
PMID:22579910   PMID:22723691   PMID:22727822   PMID:22879594   PMID:22952914   PMID:22993424   PMID:23178152   PMID:23186302   PMID:23238131   PMID:23266934   PMID:23359859   PMID:23531612  
PMID:23829864   PMID:23980149   PMID:24080944   PMID:24155320   PMID:24284211   PMID:24333873   PMID:24424047   PMID:24431439   PMID:24474699   PMID:24486711   PMID:24634352   PMID:24873729  
PMID:24952961   PMID:24953818   PMID:25162235   PMID:25288769   PMID:25479464   PMID:25592416   PMID:25679765   PMID:25781000   PMID:26020477   PMID:26056260   PMID:26365570   PMID:26518330  
PMID:26848590   PMID:27061582   PMID:27426949   PMID:28012274   PMID:28114294   PMID:28213518   PMID:28621310   PMID:28821923   PMID:29177691   PMID:29380725   PMID:29508394   PMID:29651133  
PMID:30078579   PMID:30107405   PMID:30208310   PMID:30902970   PMID:30995482   PMID:31031006   PMID:31269532   PMID:31511635   PMID:31610370   PMID:31729777   PMID:32067740   PMID:32083308  
PMID:32111696   PMID:32174013   PMID:32286880   PMID:32325033   PMID:32581705   PMID:32610120   PMID:32881992   PMID:33288910   PMID:34144406  


Genomics

Comparative Map Data
Gabbr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,356,858 - 37,385,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,356,858 - 37,385,959 (+)Ensembl
GRCm381737,045,966 - 37,074,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,045,966 - 37,075,067 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,182,911 - 37,211,250 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,654,124 - 36,682,342 (+)NCBImm8
Celera1740,469,514 - 40,497,873 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
GABBR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl629,555,629 - 29,633,976 (-)EnsemblGRCh38hg38GRCh38
GRCh38629,602,230 - 29,633,183 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37629,570,015 - 29,600,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,677,984 - 29,708,839 (-)NCBINCBI36hg18NCBI36
Build 34629,677,984 - 29,708,839NCBI
Celera631,176,094 - 31,207,052 (-)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,377,091 - 29,408,050 (-)NCBIHuRef
CHM1_1629,572,149 - 29,603,041 (-)NCBICHM1_1
Gabbr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2201,464,534 - 1,494,114 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl201,464,534 - 1,493,994 (-)Ensembl
Rnor_6.0201,955,344 - 1,984,907 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl201,955,359 - 1,984,863 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0203,996,333 - 4,025,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,553,297 - 1,582,426 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1201,554,603 - 1,577,774 (-)NCBI
Celera202,173,047 - 2,202,332 (-)NCBICelera
Cytogenetic Map20p12NCBI
Gabbr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495558385,255 - 115,189 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495558385,255 - 115,140 (-)NCBIChiLan1.0ChiLan1.0
GABBR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,065,119 - 30,095,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,065,119 - 30,095,304 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,405,026 - 29,437,108 (-)NCBIMhudiblu_PPA_v0panPan3
GABBR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,212,274 - 26,243,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3526,213,076 - 26,237,572 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3526,026,852 - 26,036,580 (-)NCBI
ROS_Cfam_1.03526,519,961 - 26,546,313 (-)NCBI
UMICH_Zoey_3.13526,175,827 - 26,201,883 (-)NCBI
UNSW_CanFamBas_1.03526,235,461 - 26,261,547 (-)NCBI
UU_Cfam_GSD_1.03527,705,638 - 27,731,798 (-)NCBI
Gabbr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,454,274 - 32,483,774 (-)NCBI
SpeTri2.0NW_0049367231,108,105 - 1,137,602 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABBR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,540,379 - 22,579,121 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,547,938 - 22,577,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,210,392 - 25,239,486 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GABBR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,985,816 - 43,017,278 (+)NCBI
ChlSab1.1 Ensembl1742,986,513 - 43,014,577 (+)Ensembl
Vero_WHO_p1.0NW_02366604429,132,753 - 29,162,814 (-)NCBI
Gabbr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,425,208 - 25,452,600 (+)NCBI

Position Markers
RH135914  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,073,419 - 37,073,614UniSTSGRCm38
MGSCv371737,210,364 - 37,210,559UniSTSGRCm37
Celera1740,496,983 - 40,497,182UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.4UniSTS
Gabbr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371737,209,085 - 37,209,188UniSTSGRCm37
Celera1740,495,704 - 40,495,807UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.4UniSTS
cM Map1720.4UniSTS
UniSTS:237645  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,044,729 - 37,044,974UniSTSGRCm38
MGSCv371737,181,674 - 37,181,919UniSTSGRCm37
Celera1740,468,277 - 40,468,522UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.4UniSTS
573K1T  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,044,546 - 37,044,713UniSTSGRCm38
MGSCv371737,181,491 - 37,181,658UniSTSGRCm37
Celera1740,468,096 - 40,468,263UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.35UniSTS
Gabbr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,072,140 - 37,072,243UniSTSGRCm38
MGSCv371737,209,085 - 37,209,188UniSTSGRCm37
Celera1740,495,704 - 40,495,807UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173184267837333884Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173565926669659396Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173648271570482715Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4709
Count of miRNA genes:950
Interacting mature miRNAs:1338
Transcripts:ENSMUST00000025338, ENSMUST00000172789, ENSMUST00000172792, ENSMUST00000173564, ENSMUST00000173823, ENSMUST00000174071, ENSMUST00000174181, ENSMUST00000174347, ENSMUST00000174456, ENSMUST00000174826, ENSMUST00000174866
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF008649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF114168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF120255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF532114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025338   ⟹   ENSMUSP00000025338
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,356,858 - 37,385,959 (+)Ensembl
GRCm38.p6 Ensembl1737,045,966 - 37,075,067 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172789   ⟹   ENSMUSP00000134580
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,357,460 - 37,360,359 (+)Ensembl
GRCm38.p6 Ensembl1737,046,568 - 37,049,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172792   ⟹   ENSMUSP00000134268
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,361,523 - 37,385,196 (+)Ensembl
GRCm38.p6 Ensembl1737,050,631 - 37,074,304 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,359,470 - 37,362,019 (+)Ensembl
GRCm38.p6 Ensembl1737,048,578 - 37,051,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173823   ⟹   ENSMUSP00000133797
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,356,912 - 37,385,182 (+)Ensembl
GRCm38.p6 Ensembl1737,046,020 - 37,074,290 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,381,336 - 37,383,122 (+)Ensembl
GRCm38.p6 Ensembl1737,070,444 - 37,072,230 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174181
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,373,876 - 37,375,749 (+)Ensembl
GRCm38.p6 Ensembl1737,062,984 - 37,064,857 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174347   ⟹   ENSMUSP00000134346
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,361,566 - 37,367,249 (+)Ensembl
GRCm38.p6 Ensembl1737,050,674 - 37,056,357 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174456   ⟹   ENSMUSP00000134409
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,356,920 - 37,360,359 (+)Ensembl
GRCm38.p6 Ensembl1737,046,028 - 37,049,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174826
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,357,091 - 37,357,732 (+)Ensembl
GRCm38.p6 Ensembl1737,046,199 - 37,046,840 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174866
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,366,604 - 37,367,755 (+)Ensembl
GRCm38.p6 Ensembl1737,055,712 - 37,056,863 (+)Ensembl
RefSeq Acc Id: NM_019439   ⟹   NP_062312
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,356,858 - 37,385,197 (+)NCBI
GRCm381737,045,966 - 37,074,305 (+)NCBI
MGSCv371737,182,911 - 37,211,250 (+)RGD
Celera1740,469,514 - 40,497,873 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524632   ⟹   XP_006524695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,356,908 - 37,385,197 (+)NCBI
GRCm381737,046,074 - 37,074,305 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249908   ⟹   XP_030105768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,357,550 - 37,385,197 (+)NCBI
GRCm381737,046,658 - 37,074,305 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249909   ⟹   XP_030105769
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,357,090 - 37,385,197 (+)NCBI
GRCm381737,046,198 - 37,074,305 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001782091
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,356,910 - 37,385,197 (+)NCBI
GRCm381737,046,152 - 37,074,305 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062312   ⟸   NM_019439
- Peptide Label: precursor
- UniProtKB: Q9WV18 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524695   ⟸   XM_006524632
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030105769   ⟸   XM_030249909
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030105768   ⟸   XM_030249908
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000134268   ⟸   ENSMUST00000172792
RefSeq Acc Id: ENSMUSP00000134580   ⟸   ENSMUST00000172789
RefSeq Acc Id: ENSMUSP00000134346   ⟸   ENSMUST00000174347
RefSeq Acc Id: ENSMUSP00000134409   ⟸   ENSMUST00000174456
RefSeq Acc Id: ENSMUSP00000133797   ⟸   ENSMUST00000173823
RefSeq Acc Id: ENSMUSP00000025338   ⟸   ENSMUST00000025338
Protein Domains
ANF_receptor   G_PROTEIN_RECEP_F3_4   Sushi

Promoters
RGD ID:13676040
Promoter ID:EPDNEW_M22169
Type:initiation region
Name:Gabbr1_1
Description:Mus musculus gamma-aminobutyric acid B receptor, 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22170  EPDNEW_M22171  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381737,046,053 - 37,046,113EPDNEW
RGD ID:13676042
Promoter ID:EPDNEW_M22170
Type:initiation region
Name:Gabbr1_2
Description:Mus musculus gamma-aminobutyric acid B receptor, 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22169  EPDNEW_M22171  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381737,046,574 - 37,046,634EPDNEW
RGD ID:13676044
Promoter ID:EPDNEW_M22171
Type:initiation region
Name:Gabbr1_3
Description:Mus musculus gamma-aminobutyric acid B receptor, 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22169  EPDNEW_M22170  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381737,050,897 - 37,050,957EPDNEW
RGD ID:6828138
Promoter ID:MM_KWN:23425
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Brain,   ES_Cell,   Lung,   MEF_B4
Transcripts:NM_019439,   UC008CLZ.1,   UC008CMB.1,   UC008CMC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361737,182,541 - 37,183,252 (+)MPROMDB
RGD ID:6849065
Promoter ID:MM_XEF:3158
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:NM_001113819
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361737,183,861 - 37,184,612 (+)MPROMDB
RGD ID:6828126
Promoter ID:MM_KWN:23426
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000113650,   UC008CMD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361737,187,406 - 37,188,107 (+)MPROMDB
RGD ID:6847392
Promoter ID:MM_ACW:22692
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:GABBR1.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361737,207,261 - 37,207,761 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860139 AgrOrtholog
Ensembl Genes ENSMUSG00000024462 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000025338 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133797 UniProtKB/TrEMBL
  ENSMUSP00000134268 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134346 UniProtKB/TrEMBL
  ENSMUSP00000134409 UniProtKB/TrEMBL
  ENSMUSP00000134580 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025338 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000172789 UniProtKB/TrEMBL
  ENSMUST00000172792 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000173823 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000174347 UniProtKB/TrEMBL
  ENSMUST00000174456 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR3_GABA-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_GABA_rcpt_B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54393 UniProtKB/Swiss-Prot
MGD MGI:1860139 ENTREZGENE
NCBI Gene 54393 ENTREZGENE
PANTHER PTHR10519 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gabbr1 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUSHI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CCP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57535 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UXR6_MOUSE UniProtKB/TrEMBL
  G3UZ52_MOUSE UniProtKB/TrEMBL
  GABR1_MOUSE UniProtKB/Swiss-Prot
  Q3TWR2_MOUSE UniProtKB/TrEMBL
  Q8CAF8_MOUSE UniProtKB/TrEMBL
  Q9WV18 ENTREZGENE
UniProt Secondary Q6PGJ2 UniProtKB/Swiss-Prot
  Q9WU48 UniProtKB/Swiss-Prot
  Q9WV15 UniProtKB/Swiss-Prot
  Q9WV16 UniProtKB/Swiss-Prot
  Q9WV17 UniProtKB/Swiss-Prot