Slc35e4 (solute carrier family 35, member E4) - Rat Genome Database

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Gene: Slc35e4 (solute carrier family 35, member E4) Mus musculus
Analyze
Symbol: Slc35e4
Name: solute carrier family 35, member E4
RGD ID: 734095
MGI Page MGI
Description: Predicted to enable antiporter activity. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system. Orthologous to human SLC35E4 (solute carrier family 35 member E4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A330108F03Rik; AI414849; AI536442; MGC28785; RP23-128G5.5; solute carrier family 35 member E4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,857,022 - 3,864,664 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,857,021 - 3,864,664 (-)EnsemblGRCm39 Ensembl
GRCm38113,907,022 - 3,914,664 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,907,021 - 3,914,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,807,025 - 3,814,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,807,025 - 3,814,667 (-)NCBIMGSCv36mm8
Celera114,401,551 - 4,409,193 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21873635   PMID:32554809  


Genomics

Comparative Map Data
Slc35e4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,857,022 - 3,864,664 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,857,021 - 3,864,664 (-)EnsemblGRCm39 Ensembl
GRCm38113,907,022 - 3,914,664 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,907,021 - 3,914,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,807,025 - 3,814,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,807,025 - 3,814,667 (-)NCBIMGSCv36mm8
Celera114,401,551 - 4,409,193 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.75NCBI
SLC35E4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,635,781 - 30,669,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,635,781 - 30,669,016 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,031,768 - 31,065,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,361,793 - 29,373,862 (+)NCBINCBI36Build 36hg18NCBI36
Celera2214,831,889 - 14,843,953 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,994,152 - 14,006,208 (+)NCBIHuRef
CHM1_12230,991,527 - 31,003,586 (+)NCBICHM1_1
T2T-CHM13v2.02231,097,725 - 31,132,558 (+)NCBIT2T-CHM13v2.0
Slc35e4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,026,914 - 83,033,778 (-)NCBIGRCr8
mRatBN7.21478,803,320 - 78,810,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,803,323 - 78,810,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,244,360 - 83,251,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,484,442 - 84,491,306 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,930,049 - 80,936,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,163,971 - 84,170,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,163,972 - 84,170,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,847,696 - 84,854,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,569,021 - 84,575,885 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11484,588,166 - 84,595,026 (-)NCBI
Celera1477,715,330 - 77,722,194 (-)NCBICelera
Cytogenetic Map14q21NCBI
Slc35e4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,853,632 - 4,863,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,853,632 - 4,863,617 (+)NCBIChiLan1.0ChiLan1.0
SLC35E4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22340,591,679 - 40,605,285 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,292,349 - 43,322,567 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02211,660,947 - 11,720,447 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,462,404 - 29,520,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,462,404 - 29,475,749 (+)Ensemblpanpan1.1panPan2
SLC35E4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,714,960 - 23,720,977 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,715,105 - 23,720,444 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,585,328 - 23,591,712 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,098,852 - 24,105,237 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,800,265 - 23,806,650 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,062,897 - 24,069,280 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,123,483 - 24,129,869 (+)NCBIUU_Cfam_GSD_1.0
Slc35e4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,641,478 - 116,648,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493690485,727 - 92,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493690485,729 - 92,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35E4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,520,089 - 47,526,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,518,602 - 47,550,157 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,630,699 - 50,637,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35E4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,516,718 - 13,529,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,519,018 - 13,528,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,597,200 - 112,608,473 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35e4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,992,931 - 7,002,037 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,992,939 - 7,002,037 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc35e4
222 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:358
Count of miRNA genes:153
Interacting mature miRNAs:162
Transcripts:ENSMUST00000051207, ENSMUST00000109995
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
AI536442  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38113,907,119 - 3,907,261UniSTSGRCm38
MGSCv37113,807,122 - 3,807,264UniSTSGRCm37
Celera114,401,648 - 4,401,790UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH119.73UniSTS
AI414849  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38113,907,109 - 3,907,261UniSTSGRCm38
MGSCv37113,807,112 - 3,807,264UniSTSGRCm37
Celera114,401,638 - 4,401,790UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1112.07UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000051207   ⟹   ENSMUSP00000050978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,857,022 - 3,864,664 (-)Ensembl
GRCm38.p6 Ensembl113,907,022 - 3,914,664 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109995   ⟹   ENSMUSP00000105622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,857,021 - 3,864,664 (-)Ensembl
GRCm38.p6 Ensembl113,907,021 - 3,914,664 (-)Ensembl
RefSeq Acc Id: NM_153142   ⟹   NP_694782
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,857,022 - 3,864,664 (-)NCBI
GRCm38113,907,022 - 3,914,664 (-)ENTREZGENE
MGSCv37113,807,025 - 3,814,667 (-)RGD
Celera114,401,551 - 4,409,193 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_694782   ⟸   NM_153142
- UniProtKB: Q5F205 (UniProtKB/Swiss-Prot),   Q8K3D6 (UniProtKB/Swiss-Prot),   A0A0R4J0N3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000050978   ⟸   ENSMUST00000051207
RefSeq Acc Id: ENSMUSP00000105622   ⟸   ENSMUST00000109995
Protein Domains
EamA   Sugar phosphate transporter

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3D6-F1-model_v2 AlphaFold Q8K3D6 1-351 view protein structure

Promoters
RGD ID:6822129
Promoter ID:MM_KWN:6197
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109995,   NM_153142
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36113,812,706 - 3,814,517 (-)MPROMDB
RGD ID:8673758
Promoter ID:EPDNEW_M14910
Type:single initiation site
Name:Slc35e4_1
Description:Mus musculus solute carrier family 35, member E4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38113,914,667 - 3,914,727EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144150 AgrOrtholog
Ensembl Genes ENSMUSG00000048807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051207 ENTREZGENE
  ENSMUST00000051207.2 UniProtKB/TrEMBL
  ENSMUST00000109995.2 UniProtKB/Swiss-Prot
InterPro Sugar_P_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:103710 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2144150 ENTREZGENE
NCBI Gene 103710 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER E4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc35e4 PhenoGen
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0N3 ENTREZGENE, UniProtKB/TrEMBL
  Q501N1_MOUSE UniProtKB/TrEMBL
  Q5F205 ENTREZGENE
  Q8K3D6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5F205 UniProtKB/Swiss-Prot