Ube2b (ubiquitin-conjugating enzyme E2B) - Rat Genome Database

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Gene: Ube2b (ubiquitin-conjugating enzyme E2B) Mus musculus
Analyze
Symbol: Ube2b
Name: ubiquitin-conjugating enzyme E2B
RGD ID: 734012
MGI Page MGI
Description: Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within several processes, including chromosome organization; positive regulation of reciprocal meiotic recombination; and sperm axoneme assembly. Located in XY body. Part of chromatin. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system; and integumental system. Orthologous to human UBE2B (ubiquitin conjugating enzyme E2 B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610301N02Rik; E2 ubiquitin-conjugating enzyme B; E2-14k; E214K; HR6; HR6B; mHR6B; Rad; RAD6 homolog B; Rad6b; ubiquitin carrier protein B; ubiquitin-conjugating enzyme E2 B; ubiquitin-conjugating enzyme E2B, RAD6 homology; ubiquitin-protein ligase B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,875,965 - 51,894,972 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,876,324 - 51,891,589 (-)EnsemblGRCm39 Ensembl
GRCm381151,985,138 - 52,004,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,985,497 - 52,000,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv371151,798,648 - 51,813,968 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,828,985 - 51,843,810 (-)NCBIMGSCv36mm8
Celera1156,553,448 - 56,568,767 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
berberine  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
butyric acid  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
celastrol  (ISO)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
Enterolactone  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenvalerate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gedunin  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (EXP,ISO)
mercury dichloride  (ISO)
metformin  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
monocrotaline  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP,ISO)
phlorizin  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
ranitidine  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
Tesaglitazar  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IDA)
cytoplasm  (ISO)
HULC complex  (IBA,ISO)
membrane  (IEA)
nucleus  (ISO)
plasma membrane  (IEA)
replication fork  (ISO)
XY body  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Loss of HR6B ubiquitin-conjugating activity results in damaged synaptonemal complex structure and increased crossing-over frequency during the male meiotic prophase. Baarends WM, etal., Mol Cell Biol 2003 Feb;23(4):1151-62.
2. Splice-site mutations: a novel genetic mechanism of Crigler-Najjar syndrome type 1. Gantla S, etal., Am J Hum Genet. 1998 Mar;62(3):585-92.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Localization of two human homologs, HHR6A and HHR6B, of the yeast DNA repair gene RAD6 to chromosomes Xq24-q25 and 5q23-q31. Koken MH, etal., Genomics 1992 Mar;12(3):447-53.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The ubiquitin-conjugating DNA repair enzyme HR6A is a maternal factor essential for early embryonic development in mice. Roest HP, etal., Mol Cell Biol 2004 Jun;24(12):5485-95.
Additional References at PubMed
PMID:2538923   PMID:7590289   PMID:7613042   PMID:8797826   PMID:8889548   PMID:8910481   PMID:9502196   PMID:9922113   PMID:10068466   PMID:10349636   PMID:10805755   PMID:11042159  
PMID:11076861   PMID:11929833   PMID:12169441   PMID:12360237   PMID:12477932   PMID:12509447   PMID:12520002   PMID:12672659   PMID:12784252   PMID:14585983   PMID:14610273   PMID:15383616  
PMID:15657431   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17010969   PMID:17462990   PMID:17488778   PMID:17720710   PMID:17967808   PMID:18339854   PMID:18799693   PMID:20537150  
PMID:21267068   PMID:21677750   PMID:21807948   PMID:21873635   PMID:23525009   PMID:23863405   PMID:24194600   PMID:24319055   PMID:25737280   PMID:27626380   PMID:28825854   PMID:29055695  
PMID:31507381   PMID:32325033   PMID:32868078   PMID:34774969  


Genomics

Comparative Map Data
Ube2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,875,965 - 51,894,972 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,876,324 - 51,891,589 (-)EnsemblGRCm39 Ensembl
GRCm381151,985,138 - 52,004,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,985,497 - 52,000,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv371151,798,648 - 51,813,968 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,828,985 - 51,843,810 (-)NCBIMGSCv36mm8
Celera1156,553,448 - 56,568,767 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.82NCBI
UBE2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,371,569 - 134,392,108 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,371,184 - 134,392,108 (+)EnsemblGRCh38hg38GRCh38
GRCh375133,707,260 - 133,727,799 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365133,734,769 - 133,755,698 (+)NCBINCBI36Build 36hg18NCBI36
Build 345133,734,768 - 133,755,698NCBI
Celera5129,830,646 - 129,851,595 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5128,891,659 - 128,912,617 (+)NCBIHuRef
CHM1_15133,139,494 - 133,160,408 (+)NCBICHM1_1
T2T-CHM13v2.05134,895,355 - 134,915,908 (+)NCBIT2T-CHM13v2.0
Ube2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81036,749,365 - 36,764,335 (-)NCBIGRCr8
mRatBN7.21036,248,434 - 36,263,379 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1036,248,438 - 36,264,665 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1040,942,877 - 40,957,457 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,432,847 - 40,447,427 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01035,936,569 - 35,951,149 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01037,439,947 - 37,454,867 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1037,441,284 - 37,455,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01037,213,057 - 37,229,080 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,509,322 - 37,523,900 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11037,516,863 - 37,530,245 (-)NCBI
Celera1035,603,474 - 35,618,052 (-)NCBICelera
Cytogenetic Map10q22NCBI
Ube2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554085,552,619 - 5,572,145 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554085,552,619 - 5,572,145 (+)NCBIChiLan1.0ChiLan1.0
UBE2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24129,669,779 - 129,689,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15127,809,653 - 127,829,555 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05129,775,011 - 129,794,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15135,925,217 - 135,944,609 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5135,925,217 - 135,944,609 (+)Ensemblpanpan1.1panPan2
UBE2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,523,671 - 22,541,473 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,525,051 - 22,540,388 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,269,251 - 21,287,230 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,325,044 - 23,343,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,326,331 - 23,345,713 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,024,744 - 22,042,221 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,890,257 - 21,907,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,532,474 - 22,550,185 (+)NCBIUU_Cfam_GSD_1.0
Ube2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213113,888,593 - 113,911,224 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936647891,996 - 911,033 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936647891,357 - 913,963 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2136,652,785 - 136,667,949 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12136,652,764 - 136,667,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,228,179 - 142,237,960 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12337,180,011 - 37,199,250 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2337,180,424 - 37,198,064 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603440,733,276 - 40,753,205 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473337,891,280 - 37,906,066 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473337,890,350 - 37,907,846 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ube2b
622 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:721
Count of miRNA genes:451
Interacting mature miRNAs:521
Transcripts:ENSMUST00000020657, ENSMUST00000109086, ENSMUST00000124699, ENSMUST00000147833
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4141770Tcpm1_mT-cell phenotype modifier 1 (mouse)Not determined5145247953615930Mouse

Markers in Region
UniSTS:236570  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381151,994,201 - 51,994,455UniSTSGRCm38
MGSCv371151,807,703 - 51,807,957UniSTSGRCm37
Celera1156,562,503 - 56,562,757UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK010432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE944184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF951907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X96859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020657   ⟹   ENSMUSP00000020657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,876,324 - 51,891,311 (-)Ensembl
GRCm38.p6 Ensembl1151,985,497 - 52,000,484 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109086   ⟹   ENSMUSP00000104714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,877,494 - 51,891,589 (-)Ensembl
GRCm38.p6 Ensembl1151,986,667 - 52,000,762 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,888,397 - 51,891,306 (-)Ensembl
GRCm38.p6 Ensembl1151,997,570 - 52,000,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,888,473 - 51,891,589 (-)Ensembl
GRCm38.p6 Ensembl1151,997,646 - 52,000,762 (-)Ensembl
RefSeq Acc Id: NM_001362685   ⟹   NP_001349614
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,875,965 - 51,891,613 (-)NCBI
GRCm381151,985,138 - 52,000,786 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362686   ⟹   NP_001349615
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,875,965 - 51,891,318 (-)NCBI
GRCm381151,985,138 - 52,000,491 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009458   ⟹   NP_033484
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,875,965 - 51,891,318 (-)NCBI
GRCm381151,985,138 - 52,000,491 (-)NCBI
MGSCv371151,798,648 - 51,813,968 (-)RGD
Celera1156,553,448 - 56,568,767 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248967   ⟹   XP_011247269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,876,382 - 51,894,917 (-)NCBI
GRCm381151,985,555 - 52,004,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245925   ⟹   XP_030101785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,876,382 - 51,894,972 (-)NCBI
GRCm381151,985,555 - 52,004,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245926   ⟹   XP_030101786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,876,382 - 51,891,617 (-)NCBI
GRCm381151,985,555 - 52,000,790 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033484   ⟸   NM_009458
- Peptide Label: isoform 1
- UniProtKB: Q3UGS2 (UniProtKB/Swiss-Prot),   P63147 (UniProtKB/Swiss-Prot),   A2RSE4 (UniProtKB/TrEMBL),   Q3TUV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247269   ⟸   XM_011248967
- Peptide Label: isoform X1
- UniProtKB: Q3UGS2 (UniProtKB/Swiss-Prot),   P63147 (UniProtKB/Swiss-Prot),   A2RSE4 (UniProtKB/TrEMBL),   Q3TUV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349614   ⟸   NM_001362685
- Peptide Label: isoform 1
- UniProtKB: Q3UGS2 (UniProtKB/Swiss-Prot),   P63147 (UniProtKB/Swiss-Prot),   A2RSE4 (UniProtKB/TrEMBL),   Q3TUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349615   ⟸   NM_001362686
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030101785   ⟸   XM_030245925
- Peptide Label: isoform X1
- UniProtKB: Q3UGS2 (UniProtKB/Swiss-Prot),   P63147 (UniProtKB/Swiss-Prot),   A2RSE4 (UniProtKB/TrEMBL),   Q3TUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101786   ⟸   XM_030245926
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000020657   ⟸   ENSMUST00000020657
RefSeq Acc Id: ENSMUSP00000104714   ⟸   ENSMUST00000109086
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63147-F1-model_v2 AlphaFold P63147 1-152 view protein structure

Promoters
RGD ID:6822427
Promoter ID:MM_KWN:7324
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109086,   OTTMUST00000012488,   OTTMUST00000012490,   OTTMUST00000012491,   OTTMUST00000012492
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361151,813,171 - 51,814,517 (-)MPROMDB
RGD ID:8674572
Promoter ID:EPDNEW_M15316
Type:initiation region
Name:Ube2b_1
Description:Mus musculus ubiquitin-conjugating enzyme E2B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381152,000,444 - 52,000,504EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102944 AgrOrtholog
Ensembl Genes ENSMUSG00000020390 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020657 ENTREZGENE
  ENSMUST00000020657.13 UniProtKB/Swiss-Prot
  ENSMUST00000109086 ENTREZGENE
  ENSMUST00000109086.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro UBQ-conjugat_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102944 ENTREZGENE
NCBI Gene 22210 ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UQ_con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ube2b PhenoGen
PROSITE UBIQUITIN_CONJUGAT_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN_CONJUGAT_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBCc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RSE4 ENTREZGENE, UniProtKB/TrEMBL
  P63147 ENTREZGENE
  Q3TUV9 ENTREZGENE
  Q3UGS2 ENTREZGENE
  UBE2B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P23567 UniProtKB/Swiss-Prot
  Q3UGS2 UniProtKB/Swiss-Prot
  Q9D0J6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-19 Ube2b  ubiquitin-conjugating enzyme E2B  Ube2b  ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED