Stc2 (stanniocalcin 2) - Rat Genome Database

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Gene: Stc2 (stanniocalcin 2) Mus musculus
Analyze
Symbol: Stc2
Name: stanniocalcin 2
RGD ID: 733904
MGI Page MGI
Description: Predicted to enable enzyme binding activity; heme binding activity; and protein homodimerization activity. Acts upstream of or within several processes, including endoplasmic reticulum unfolded protein response; intracellular calcium ion homeostasis; and regulation of store-operated calcium entry. Located in Golgi apparatus and endoplasmic reticulum. Is expressed in several structures, including embryo mesenchyme; genitourinary system; gut; olfactory epithelium; and vertebral axis musculature. Orthologous to human STC2 (stanniocalcin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW125853; expressed sequence AW125853; mustc; mustc2; stanniocalcin 2-like; stanniocalcin-2; Stc; STC-2; Stc2l
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,309,441 - 31,320,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,307,307 - 31,320,074 (-)EnsemblGRCm39 Ensembl
GRCm381131,359,441 - 31,370,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,357,307 - 31,370,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv371131,259,441 - 31,270,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,259,441 - 31,270,061 (-)NCBIMGSCv36mm8
Celera1133,778,331 - 33,788,980 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(E)-thiamethoxam  (EXP)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
arachidonic acid  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chloroquine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
Didecyldimethylammonium  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (EXP,ISO)
diphenylcyclopropenone  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
enniatin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (ISO)
GW 4064  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
iron dichloride  (ISO)
ketoconazole  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
mercury dibromide  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
Muraglitazar  (ISO)
N(4)-hydroxycytidine  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
niclosamide  (ISO)
nicotine  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
picene  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
prothioconazole  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
succimer  (EXP,ISO)
sulindac  (ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP,ISO)
tetrachloroethene  (EXP)
thapsigargin  (ISO)
thiamethoxam  (EXP)
thimerosal  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triacsin C  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vorinostat  (ISO)
XL147  (EXP)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Characterization of stanniocalcin 2, a novel target of the mammalian unfolded protein response with cytoprotective properties. Ito D, etal., Mol Cell Biol. 2004 Nov;24(21):9456-69.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Differential gene signatures in rat mammary tumors induced by DMBA and those induced by fractionated gamma radiation. Lee HJ, etal., Radiat Res. 2008 Nov;170(5):579-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm. Wang T, etal., Front Immunol. 2022 May 27;13:843408. doi: 10.3389/fimmu.2022.843408. eCollection 2022.
Additional References at PubMed
PMID:8889548   PMID:9723890   PMID:9753616   PMID:10349636   PMID:10450831   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12756295   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:17170753   PMID:18258678   PMID:18287559   PMID:21267068   PMID:21386911   PMID:21545732   PMID:21746875   PMID:21873635   PMID:21924257   PMID:22285620   PMID:23269473   PMID:25012175  
PMID:25533459   PMID:26983002   PMID:28696214   PMID:28990324   PMID:29628897   PMID:29748538   PMID:31202927   PMID:31761296   PMID:33011858   PMID:34111662   PMID:37562971   PMID:37568262  


Genomics

Comparative Map Data
Stc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,309,441 - 31,320,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,307,307 - 31,320,074 (-)EnsemblGRCm39 Ensembl
GRCm381131,359,441 - 31,370,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,357,307 - 31,370,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv371131,259,441 - 31,270,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,259,441 - 31,270,061 (-)NCBIMGSCv36mm8
Celera1133,778,331 - 33,788,980 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.4NCBI
STC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,314,723 - 173,328,414 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,314,723 - 173,328,447 (-)EnsemblGRCh38hg38GRCh38
GRCh375172,741,726 - 172,755,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,674,332 - 172,689,112 (-)NCBINCBI36Build 36hg18NCBI36
Build 345172,660,711 - 172,687,936NCBI
Celera5168,774,827 - 168,789,607 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5167,836,956 - 167,851,740 (-)NCBIHuRef
CHM1_15172,174,113 - 172,188,892 (-)NCBICHM1_1
T2T-CHM13v2.05173,854,781 - 173,868,472 (-)NCBIT2T-CHM13v2.0
Stc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,755,508 - 16,765,275 (+)NCBIGRCr8
mRatBN7.21016,251,046 - 16,260,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,250,853 - 16,262,973 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,999,993 - 21,009,760 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,488,943 - 20,498,710 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,978,545 - 15,988,328 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,542,909 - 16,552,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,542,882 - 16,553,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,432,189 - 16,441,955 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,514,603 - 16,524,369 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,515,651 - 16,525,418 (+)NCBI
Celera1015,912,872 - 15,922,638 (+)NCBICelera
Cytogenetic Map10q12NCBI
Stc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,934,932 - 25,949,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,937,174 - 25,950,221 (-)NCBIChiLan1.0ChiLan1.0
STC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,451,252 - 168,463,400 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,588,413 - 166,603,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,668,851 - 168,681,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,575,412 - 175,587,832 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,575,419 - 175,587,832 (-)Ensemblpanpan1.1panPan2
STC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,151,951 - 39,165,514 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,152,503 - 39,162,343 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,097,951 - 39,109,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,523,070 - 39,537,223 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,524,206 - 39,534,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,341,084 - 39,355,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,529,915 - 39,543,843 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,038,732 - 40,052,874 (+)NCBIUU_Cfam_GSD_1.0
Stc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,596,596 - 93,607,949 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,319,111 - 2,332,988 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,319,546 - 2,331,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1650,989,433 - 51,004,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11650,989,676 - 51,001,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,330,021 - 55,341,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,475,020 - 75,489,727 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,475,022 - 75,488,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,118,074 - 3,132,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473316,773,644 - 16,785,214 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473316,773,422 - 16,787,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stc2
348 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1788
Count of miRNA genes:731
Interacting mature miRNAs:927
Transcripts:ENSMUST00000020546, ENSMUST00000134199, ENSMUST00000139991, ENSMUST00000149467, ENSMUST00000152094
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
25394552Skmw69_mskeletal muscle weight 69, TA (mouse)112969902932329535Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
25394550Skmw71_mskeletal muscle weight 71, gastroc (mouse)113127543232745567Mouse

Markers in Region
AW125853  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381131,370,851 - 31,370,980UniSTSGRCm38
MGSCv371131,270,851 - 31,270,980UniSTSGRCm37
Celera1133,789,757 - 33,789,886UniSTS
Cytogenetic Map11A4UniSTS
Whitehead/MRC_RH11459.64UniSTS
AF031035  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381131,359,606 - 31,359,723UniSTSGRCm38
MGSCv371131,259,606 - 31,259,723UniSTSGRCm37
Celera1133,778,496 - 33,778,614UniSTS
Cytogenetic Map11A4UniSTS
Whitehead/MRC_RH11457.12UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000020546   ⟹   ENSMUSP00000020546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,307,307 - 31,320,074 (-)Ensembl
GRCm38.p6 Ensembl1131,357,307 - 31,370,074 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,318,003 - 31,319,056 (-)Ensembl
GRCm38.p6 Ensembl1131,368,003 - 31,369,056 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,307,986 - 31,319,103 (-)Ensembl
GRCm38.p6 Ensembl1131,357,986 - 31,369,103 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,315,441 - 31,318,166 (-)Ensembl
GRCm38.p6 Ensembl1131,365,441 - 31,368,166 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,317,999 - 31,320,047 (-)Ensembl
GRCm38.p6 Ensembl1131,367,999 - 31,370,047 (-)Ensembl
RefSeq Acc Id: NM_011491   ⟹   NP_035621
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,309,441 - 31,320,061 (-)NCBI
GRCm381131,359,441 - 31,370,061 (-)ENTREZGENE
MGSCv371131,259,441 - 31,270,061 (-)RGD
Celera1133,778,331 - 33,788,980 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035621   ⟸   NM_011491
- Peptide Label: precursor
- UniProtKB: O88452 (UniProtKB/Swiss-Prot),   Q5SS12 (UniProtKB/TrEMBL),   Q9DCS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020546   ⟸   ENSMUST00000020546

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88452-F1-model_v2 AlphaFold O88452 1-296 view protein structure

Promoters
RGD ID:6822253
Promoter ID:MM_KWN:6850
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000011959,   OTTMUST00000011960,   OTTMUST00000011961
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361131,268,686 - 31,269,186 (-)MPROMDB
RGD ID:6822250
Promoter ID:MM_KWN:6851
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000011957,   OTTMUST00000011958
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361131,269,706 - 31,270,206 (-)MPROMDB
RGD ID:6848992
Promoter ID:MM_XEF:997
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_003714
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361131,270,986 - 31,271,486 (-)MPROMDB
RGD ID:8674208
Promoter ID:EPDNEW_M15135
Type:multiple initiation site
Name:Stc2_1
Description:Mus musculus stanniocalcin 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381131,370,072 - 31,370,132EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1316731 AgrOrtholog
Ensembl Genes ENSMUSG00000020303 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020546 ENTREZGENE
  ENSMUST00000020546.3 UniProtKB/Swiss-Prot
InterPro Stanniocalcin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20856 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1316731 ENTREZGENE
NCBI Gene 20856 ENTREZGENE
PANTHER PTHR11245 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STANNIOCALCIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Stanniocalcin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stc2 PhenoGen
UniProt O88452 ENTREZGENE
  Q5SS12 ENTREZGENE, UniProtKB/TrEMBL
  Q9DCS6 ENTREZGENE, UniProtKB/TrEMBL
  STC2_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Stc2  stanniocalcin 2  AW125853  expressed sequence AW125853  Data merged from RGD:1610537 737654 PROVISIONAL