Cacna1e (calcium channel, voltage-dependent, R type, alpha 1E subunit) - Rat Genome Database

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Gene: Cacna1e (calcium channel, voltage-dependent, R type, alpha 1E subunit) Mus musculus
Analyze
Symbol: Cacna1e
Name: calcium channel, voltage-dependent, R type, alpha 1E subunit
RGD ID: 733703
MGI Page MGI
Description: Enables voltage-gated calcium channel activity. Acts upstream of or within several processes, including behavioral fear response; regulation of peptide hormone secretion; and visual learning. Part of voltage-gated calcium channel complex. Is active in postsynaptic membrane and presynaptic membrane. Is expressed in central nervous system; dorsal root ganglion; heart; and lower jaw molar. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 69. Orthologous to human CACNA1E (calcium voltage-gated channel subunit alpha1 E).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: A430040I15; alp; alpha1E; BII; brain calcium channel II; Cach6; Cacnl1a6; calcium channel, L type, alpha-1 polypeptide; calcium channel, L type, alpha-1 polypeptide, isoform 6; calcium channel, voltage-dependent, L type, alpha 1E subunit; Cav2; Cav2.3; Cchr; Cchra1; voltage-dependent R-type calcium channel subunit alpha-1E; voltage-gated calcium channel subunit alpha Cav2.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,266,552 - 154,760,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,266,477 - 154,760,247 (-)EnsemblGRCm39 Ensembl
GRCm381154,390,806 - 154,884,785 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,390,731 - 154,884,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv371156,239,649 - 156,573,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361156,158,170 - 156,488,574 (-)NCBIMGSCv36mm8
Celera1156,824,777 - 157,160,713 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map166.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
2. Mice lacking Ca(v)2.3 (alpha1E) calcium channel exhibit hyperglycemia. Matsuda Y, etal., Biochem Biophys Res Commun 2001 Dec 14;289(4):791-5.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8071363   PMID:8661716   PMID:9651528   PMID:9927670   PMID:10349636   PMID:10441734   PMID:10501973   PMID:10801976   PMID:11042159   PMID:11076861   PMID:11102459   PMID:11217851  
PMID:11263998   PMID:11296258   PMID:11689014   PMID:11854466   PMID:11893922   PMID:11923483   PMID:11959138   PMID:12060068   PMID:12074836   PMID:12154172   PMID:12437986   PMID:12477932  
PMID:12818950   PMID:12827191   PMID:12895422   PMID:12900400   PMID:12973680   PMID:14976402   PMID:15258581   PMID:15451373   PMID:15610184   PMID:15630454   PMID:15777780   PMID:16141072  
PMID:16141073   PMID:16381801   PMID:16452087   PMID:16631598   PMID:16686648   PMID:16910173   PMID:16924481   PMID:16985003   PMID:17114649   PMID:17224406   PMID:17369816   PMID:17376845  
PMID:18834942   PMID:19193890   PMID:19320717   PMID:19657020   PMID:19726083   PMID:20188150   PMID:21103408   PMID:21267068   PMID:21482359   PMID:21695265   PMID:21873635   PMID:21883984  
PMID:22009744   PMID:22240250   PMID:23015445   PMID:23086800   PMID:24381275   PMID:24453333   PMID:24523520   PMID:24790266   PMID:25603538   PMID:26418566   PMID:27321927   PMID:27426949  
PMID:28393090   PMID:28614186   PMID:28671696   PMID:28706196   PMID:29274300   PMID:30521978   PMID:30786075   PMID:30877033   PMID:31040226   PMID:31704946   PMID:31827421   PMID:32375703  
PMID:32581705   PMID:32616470   PMID:33009476   PMID:33913808   PMID:34321999   PMID:35045307   PMID:35176221   PMID:35267086   PMID:35324301   PMID:35864088   PMID:37141091   PMID:38081835  
PMID:38187761  


Genomics

Comparative Map Data
Cacna1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,266,552 - 154,760,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,266,477 - 154,760,247 (-)EnsemblGRCm39 Ensembl
GRCm381154,390,806 - 154,884,785 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,390,731 - 154,884,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv371156,239,649 - 156,573,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361156,158,170 - 156,488,574 (-)NCBIMGSCv36mm8
Celera1156,824,777 - 157,160,713 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map166.14NCBI
CACNA1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381181,317,699 - 181,808,084 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1181,317,690 - 181,813,262 (+)EnsemblGRCh38hg38GRCh38
GRCh371181,452,653 - 181,777,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361179,719,339 - 180,037,339 (+)NCBINCBI36Build 36hg18NCBI36
Build 341178,184,372 - 178,502,370NCBI
Celera1154,559,815 - 154,877,831 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1152,684,592 - 153,007,527 (+)NCBIHuRef
CHM1_11182,875,471 - 183,198,679 (+)NCBICHM1_1
T2T-CHM13v2.01180,673,125 - 181,163,498 (+)NCBIT2T-CHM13v2.0
Cacna1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81369,125,048 - 69,613,795 (-)NCBIGRCr8
mRatBN7.21366,574,659 - 67,063,443 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1366,581,920 - 66,894,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1369,159,829 - 69,478,689 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01370,484,751 - 70,793,099 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01367,745,152 - 68,054,007 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01371,899,445 - 72,534,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1371,906,702 - 72,367,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01376,843,146 - 77,473,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41369,367,254 - 69,683,943 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11369,380,942 - 69,697,975 (-)NCBI
Celera1366,463,930 - 66,771,500 (-)NCBICelera
Cytogenetic Map13q21NCBI
Cacna1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540620,510,954 - 20,816,678 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540620,356,564 - 20,824,679 (+)NCBIChiLan1.0ChiLan1.0
CACNA1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2167,953,053 - 68,451,326 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,630,599 - 68,013,823 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,796,855 - 157,296,987 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,627,210 - 160,957,228 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,628,089 - 160,949,270 (+)Ensemblpanpan1.1panPan2
CACNA1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1714,892,165 - 15,267,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl714,707,801 - 15,267,422 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha714,468,762 - 14,855,678 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0714,765,860 - 15,001,883 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl714,504,232 - 15,000,034 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1714,528,588 - 14,909,826 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0714,637,758 - 15,018,763 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0714,762,516 - 15,144,544 (+)NCBIUU_Cfam_GSD_1.0
Cacna1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934489,848,150 - 90,292,121 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364817,702,152 - 7,993,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364817,694,960 - 7,908,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9123,006,195 - 123,315,319 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19122,827,386 - 123,318,372 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29135,315,145 - 135,473,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12547,589,859 - 47,924,081 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2547,597,808 - 47,922,969 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605548,962,031 - 49,465,823 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247711,733,215 - 2,039,784 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247711,554,875 - 2,047,597 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacna1e
13792 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2801
Count of miRNA genes:837
Interacting mature miRNAs:1158
Transcripts:ENSMUST00000004214
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147125258158233272Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150606337159307464Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse

Markers in Region
D1Mit142  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,524,058 - 154,524,178UniSTSGRCm38
MGSCv371156,371,188 - 156,371,308UniSTSGRCm37
Celera1156,957,174 - 156,957,294UniSTS
Cytogenetic Map1G3UniSTS
cM Map179.0UniSTS
Whitehead Genetic180.9UniSTS
Whitehead_YAC1 UniSTS
UniSTS:234235  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,624,572 - 154,624,821UniSTSGRCm38
MGSCv371156,471,702 - 156,471,951UniSTSGRCm37
Celera1157,058,791 - 157,059,040UniSTS
Cytogenetic Map1G3UniSTS
cM Map186.0UniSTS
Cacna1e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,726,091 - 154,726,219UniSTSGRCm38
MGSCv371156,573,221 - 156,573,349UniSTSGRCm37
Celera1157,160,884 - 157,161,012UniSTS
Cytogenetic Map1G3UniSTS
cM Map186.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC101727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC112154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF042066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000004214   ⟹   ENSMUSP00000004214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,268,265 - 154,601,666 (-)Ensembl
GRCm38.p6 Ensembl1154,392,519 - 154,725,920 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,757,912 - 154,759,770 (-)Ensembl
GRCm38.p6 Ensembl1154,882,166 - 154,884,024 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187541   ⟹   ENSMUSP00000140937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,266,477 - 154,602,102 (-)Ensembl
GRCm38.p6 Ensembl1154,390,731 - 154,726,356 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,574,835 - 154,760,247 (-)Ensembl
GRCm38.p6 Ensembl1154,699,089 - 154,884,501 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,344,798 - 154,352,442 (-)Ensembl
GRCm38.p6 Ensembl1154,469,052 - 154,476,696 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,356,821 - 154,692,687 (-)Ensembl
GRCm38.p6 Ensembl1154,481,075 - 154,816,941 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211821   ⟹   ENSMUSP00000148507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,274,139 - 154,739,813 (-)Ensembl
GRCm38.p6 Ensembl1154,398,393 - 154,864,067 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226546   ⟹   ENSMUSP00000153897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,289,722 - 154,296,901 (-)Ensembl
GRCm38.p6 Ensembl1154,413,976 - 154,421,155 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238369   ⟹   ENSMUSP00000158720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,363,790 - 154,692,687 (-)Ensembl
GRCm38.p6 Ensembl1154,488,044 - 154,816,941 (-)Ensembl
RefSeq Acc Id: NM_009782   ⟹   NP_033912
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,268,265 - 154,601,666 (-)NCBI
GRCm381154,392,519 - 154,725,920 (-)NCBI
MGSCv371156,239,649 - 156,573,050 (-)RGD
Celera1156,824,777 - 157,160,713 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529105   ⟹   XP_006529168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,289,739 - 154,760,268 (-)NCBI
GRCm381154,413,993 - 154,884,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247909   ⟹   XP_011246211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,693,111 (-)NCBI
GRCm381154,390,806 - 154,817,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247916   ⟹   XP_011246218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,639,365 (-)NCBI
GRCm381154,390,806 - 154,727,663 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312578   ⟹   XP_017168067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,270 (-)NCBI
GRCm381154,390,806 - 154,884,526 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312613   ⟹   XP_017168102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312619   ⟹   XP_017168108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312628   ⟹   XP_017168117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312642   ⟹   XP_017168131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312660   ⟹   XP_017168149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312682   ⟹   XP_017168171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,274,139 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312712   ⟹   XP_017168201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312730   ⟹   XP_017168219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312745   ⟹   XP_017168234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,269,083 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312766   ⟹   XP_017168255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,271,385 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312795   ⟹   XP_017168284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,274,139 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312824   ⟹   XP_017168313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,271,385 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312848   ⟹   XP_017168337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243926   ⟹   XP_030099786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,268 (-)NCBI
GRCm381154,390,806 - 154,884,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243929   ⟹   XP_030099789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,760,374 (-)NCBI
GRCm381154,390,806 - 154,884,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244154   ⟹   XP_030100014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,266,552 - 154,639,363 (-)NCBI
GRCm381154,390,806 - 154,727,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155941   ⟹   XP_036011834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,281,475 - 154,760,268 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_033912 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529168 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246211 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246218 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168067 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168102 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168108 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168117 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168131 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168149 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168171 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168201 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168219 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168234 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168255 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168284 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168313 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168337 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099786 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099789 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100014 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011834 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC32462 (Get FASTA)   NCBI Sequence Viewer  
  AAI50751 (Get FASTA)   NCBI Sequence Viewer  
  EDL39414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000004214.9
  ENSMUSP00000140937
  ENSMUSP00000140937.2
  ENSMUSP00000148507
  ENSMUSP00000148507.2
  ENSMUSP00000153897.2
  ENSMUSP00000158720.2
GenBank Protein Q61290 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_033912   ⟸   NM_009782
- UniProtKB: A0A087WS83 (UniProtKB/TrEMBL),   B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529168   ⟸   XM_006529105
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_011246211   ⟸   XM_011247909
- Peptide Label: isoform X1
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246218   ⟸   XM_011247916
- Peptide Label: isoform X14
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168067   ⟸   XM_017312578
- Peptide Label: isoform X1
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168337   ⟸   XM_017312848
- Peptide Label: isoform X14
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168201   ⟸   XM_017312712
- Peptide Label: isoform X8
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168284   ⟸   XM_017312795
- Peptide Label: isoform X12
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168171   ⟸   XM_017312682
- Peptide Label: isoform X7
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168149   ⟸   XM_017312660
- Peptide Label: isoform X6
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168313   ⟸   XM_017312824
- Peptide Label: isoform X13
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168117   ⟸   XM_017312628
- Peptide Label: isoform X4
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168131   ⟸   XM_017312642
- Peptide Label: isoform X5
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168234   ⟸   XM_017312745
- Peptide Label: isoform X10
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168108   ⟸   XM_017312619
- Peptide Label: isoform X3
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168219   ⟸   XM_017312730
- Peptide Label: isoform X9
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168255   ⟸   XM_017312766
- Peptide Label: isoform X11
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168102   ⟸   XM_017312613
- Peptide Label: isoform X2
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099789   ⟸   XM_030243929
- Peptide Label: isoform X1
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030099786   ⟸   XM_030243926
- Peptide Label: isoform X1
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030100014   ⟸   XM_030244154
- Peptide Label: isoform X15
- UniProtKB: B2RWX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000148507   ⟸   ENSMUST00000211821
RefSeq Acc Id: ENSMUSP00000158720   ⟸   ENSMUST00000238369
RefSeq Acc Id: ENSMUSP00000140937   ⟸   ENSMUST00000187541
RefSeq Acc Id: ENSMUSP00000153897   ⟸   ENSMUST00000226546
RefSeq Acc Id: ENSMUSP00000004214   ⟸   ENSMUST00000004214
RefSeq Acc Id: XP_036011834   ⟸   XM_036155941
- Peptide Label: isoform X16
- UniProtKB: Q61290 (UniProtKB/Swiss-Prot)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61290-F1-model_v2 AlphaFold Q61290 1-2272 view protein structure

Promoters
RGD ID:6875304
Promoter ID:EPDNEW_M1103
Type:initiation region
Name:AK171983_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,884,383 - 154,884,443EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106217 AgrOrtholog
Ensembl Genes ENSMUSG00000004110 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004214.15 UniProtKB/TrEMBL
  ENSMUST00000187541 ENTREZGENE
  ENSMUST00000187541.7 UniProtKB/TrEMBL
  ENSMUST00000211821 ENTREZGENE
  ENSMUST00000211821.2 UniProtKB/TrEMBL
  ENSMUST00000226546.2 UniProtKB/TrEMBL
  ENSMUST00000238369.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.2180 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.2500 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPHH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_a1su_IQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_R_a1su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12290 UniProtKB/TrEMBL
MGD MGI:106217 ENTREZGENE
NCBI Gene 12290 ENTREZGENE
PANTHER PTHR45628:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ca_chan_IQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPHH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacna1e PhenoGen
PRINTS CACHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RVDCCALPHA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ca_chan_IQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WS83 ENTREZGENE, UniProtKB/TrEMBL
  A0A1D5RLU3_MOUSE UniProtKB/TrEMBL
  A0A2I3BPS0_MOUSE UniProtKB/TrEMBL
  A0A571BF18_MOUSE UniProtKB/TrEMBL
  B2RWX7 ENTREZGENE, UniProtKB/TrEMBL
  CAC1E_MOUSE UniProtKB/Swiss-Prot
  E9QK20_MOUSE UniProtKB/TrEMBL
  Q61290 ENTREZGENE