Cdon (cell adhesion molecule-related/down-regulated by oncogenes) - Rat Genome Database

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Gene: Cdon (cell adhesion molecule-related/down-regulated by oncogenes) Mus musculus
Analyze
Symbol: Cdon
Name: cell adhesion molecule-related/down-regulated by oncogenes
RGD ID: 733697
MGI Page MGI
Description: Involved in several processes, including animal organ development; positive regulation of intracellular signal transduction; and positive regulation of nitrogen compound metabolic process. Predicted to localize to cell surface and integral component of plasma membrane. Is expressed in several structures, including central nervous system; embryo mesenchyme; genitourinary system; limb; and sensory organ. Used to study holoprosencephaly 11. Human ortholog(s) of this gene implicated in holoprosencephaly 11. Orthologous to human CDON (cell adhesion associated, oncogene regulated); PARTICIPATES IN Hedgehog signaling pathway; p38 MAPK signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CAM-related/down-regulated by oncogenes; CD; Cd0; CDO; immunoglobulin superfamily member CDO; MGC129383; oncogene-regulated cell adhesion molecule; Orcam
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,332,823 - 35,418,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl935,332,424 - 35,418,948 (+)Ensembl
GRCm38935,421,528 - 35,507,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,421,128 - 35,507,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,259,661 - 35,315,237 (+)NCBIGRCm37mm9NCBIm37
MGSCv36935,201,747 - 35,254,013 (+)NCBImm8
Celera932,686,755 - 32,744,725 (+)NCBICelera
Cytogenetic Map9A4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood vessel morphology  (IAGP)
abnormal brain ventricle morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal external nares morphology  (IAGP)
abnormal face development  (IAGP)
abnormal forebrain development  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal intervertebral disk development  (IAGP)
abnormal lateral ganglionic eminence morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal maxilla morphology  (IAGP)
abnormal maxillary shelf morphology  (IAGP)
abnormal medial ganglionic eminence morphology  (IAGP)
abnormal nasal septum morphology  (IAGP)
abnormal neuronal precursor proliferation  (IAGP)
abnormal nose morphology  (IAGP)
abnormal palate development  (IAGP)
abnormal philtrum morphology  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal primary palate development  (IAGP)
abnormal secondary palate development  (IAGP)
abnormal upper incisor morphology  (IAGP)
abnormal upper lip morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral body morphology  (IAGP)
absent lamina terminalis  (IAGP)
absent mandible  (IAGP)
absent maxilla  (IAGP)
absent maxillary shelf  (IAGP)
absent nasal septum cartilage  (IAGP)
absent primary palate  (IAGP)
absent upper incisors  (IAGP)
basisphenoid bone foramen  (IAGP)
cervical vertebral fusion  (IAGP)
cleft palate  (IAGP)
cleft upper lip  (IAGP)
decreased body size  (IAGP)
decreased maxillary shelf size  (IAGP)
domed cranium  (IAGP)
enlarged lateral ventricles  (IAGP)
external nares atresia  (IAGP)
failure of palatal shelf elevation  (IAGP)
hemorrhage  (IAGP)
holoprosencephaly  (IAGP)
hydrocephaly  (IAGP)
lethality during fetal growth through weaning, complete penetrance  (IAGP)
nasal septum cartilage hypoplasia  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
ocular hypotelorism  (IAGP)
oligodactyly  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
piriform aperture stenosis  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
proboscis  (IAGP)
small basisphenoid bone  (IAGP)
small nasal septum  (IAGP)
syndactyly  (IAGP)
thin cerebral cortex  (IAGP)
weakness  (IAGP)
References

Additional References at PubMed
PMID:9786951   PMID:10349636   PMID:10974670   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11782431   PMID:12477932   PMID:12620190   PMID:14610273   PMID:15489334   PMID:15520228  
PMID:15572127   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16169709   PMID:16284245   PMID:16602821   PMID:16647303   PMID:16647304   PMID:16648472   PMID:17074887   PMID:17086203  
PMID:17504941   PMID:18287559   PMID:18678706   PMID:18721461   PMID:19244314   PMID:19470755   PMID:19754878   PMID:20053908   PMID:20160094   PMID:20484574   PMID:20519495   PMID:21183473  
PMID:21397010   PMID:21664576   PMID:21664577   PMID:21802063   PMID:21820049   PMID:22298426   PMID:22337877   PMID:22930637   PMID:23071453   PMID:23569214   PMID:23678105   PMID:23940460  
PMID:24244464   PMID:24952961   PMID:25063195   PMID:25117422   PMID:25231763   PMID:25535338   PMID:25826454   PMID:26439398   PMID:26906632   PMID:26988125   PMID:27155367   PMID:27380411  
PMID:27419218   PMID:27763641   PMID:28011038   PMID:28154134   PMID:28441416   PMID:29138054   PMID:29139542   PMID:29249622   PMID:29475039   PMID:30485816   PMID:30487570   PMID:30529950  
PMID:30705426   PMID:30872278   PMID:31073041   PMID:31719045   PMID:32103583   PMID:32319178   PMID:32332736   PMID:32876567   PMID:33028094   PMID:33060130   PMID:33723039  


Genomics

Comparative Map Data
Cdon
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,332,823 - 35,418,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl935,332,424 - 35,418,948 (+)Ensembl
GRCm38935,421,528 - 35,507,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,421,128 - 35,507,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,259,661 - 35,315,237 (+)NCBIGRCm37mm9NCBIm37
MGSCv36935,201,747 - 35,254,013 (+)NCBImm8
Celera932,686,755 - 32,744,725 (+)NCBICelera
Cytogenetic Map9A4NCBI
CDON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11125,955,796 - 126,063,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3811125,956,813 - 126,063,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711125,826,716 - 125,933,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,331,923 - 125,438,397 (-)NCBINCBI36hg18NCBI36
Build 3411125,335,783 - 125,438,397NCBI
Celera11122,988,054 - 123,098,575 (-)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11121,768,684 - 121,875,085 (-)NCBIHuRef
CHM1_111125,713,444 - 125,819,847 (-)NCBICHM1_1
Cdon
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2833,775,123 - 33,861,635 (+)NCBI
Rnor_6.0 Ensembl836,625,733 - 36,710,949 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0836,625,757 - 36,712,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0836,642,905 - 36,728,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4835,238,899 - 35,291,743 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1835,247,664 - 35,300,509 (+)NCBI
Celera835,227,303 - 35,280,140 (+)NCBICelera
Cytogenetic Map8q21NCBI
Cdon
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBIChiLan1.0ChiLan1.0
CDON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111124,685,084 - 124,789,649 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,685,084 - 124,786,091 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011120,772,160 - 120,877,529 (-)NCBIMhudiblu_PPA_v0panPan3
CDON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,439,606 - 8,536,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,446,346 - 8,533,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBI
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBI
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBI
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBI
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBI
Cdon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,178,109 - 108,358,526 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDON
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,091,778 - 117,255,354 (-)NCBI
ChlSab1.1 Ensembl1117,092,178 - 117,152,030 (-)Ensembl
Vero_WHO_p1.0NW_0236660438,742,602 - 8,983,460 (+)NCBI
Cdon
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624812107,632 - 203,791 (-)NCBI

Position Markers
D9Mit127  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,452,182 - 35,452,326UniSTSGRCm38
MGSCv37935,259,767 - 35,259,911UniSTSGRCm37
Celera932,686,861 - 32,687,005UniSTS
Cytogenetic Map9A4UniSTS
cM Map917.0UniSTS
Whitehead Genetic913.1UniSTS
AF090866  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,504,216 - 35,504,304UniSTSGRCm38
MGSCv37935,311,801 - 35,311,889UniSTSGRCm37
Celera932,741,291 - 32,741,379UniSTS
Cytogenetic Map9A4UniSTS
Whitehead/MRC_RH9360.32UniSTS
UniSTS:236088  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,504,647 - 35,504,847UniSTSGRCm38
MGSCv37935,312,232 - 35,312,432UniSTSGRCm37
Celera932,741,722 - 32,741,922UniSTS
Cytogenetic Map9A4UniSTS
D7S840  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera932,699,828 - 32,700,582UniSTS
Cytogenetic Map9A4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756137395074Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9999947243999472Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91245867446458818Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91347987947479879Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91550045549500594Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91550045549500594Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91550045549500594Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91550045549500594Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91583833149838331Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91583833149838331Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91583833149838331Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91610000050100000Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91610000050100000Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91679834550798345Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91706754451067647Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined92003211054032229Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92024206654242196Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92039490154395074Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92039490154395074Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92039490154395074Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92039490154395074Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92094144454941444Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92567618959676285Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92567618959676285Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92567618959676285Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92567618959676285Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92688512460885255Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92688512460885255Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92688512460885255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92733989761340026Mouse
14700787Ncdq1_mnevus cell density QTL 1 (mouse)92820000036200000Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92859203741888030Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92938163163381774Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92938163163381774Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93014186664141979Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93050339840654618Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93082861764828723Mouse
4142455Elnv_mepilepsy naive (mouse)Not determined93136026237395074Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93252326366523557Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93254112166541246Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93259987266600121Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93297840266978536Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93419332342853570Mouse
1300868Tlf_mT lymphocyte fraction (mouse)Not determined93492645237395074Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2490
Count of miRNA genes:744
Interacting mature miRNAs:1008
Transcripts:ENSMUST00000042842, ENSMUST00000119129, ENSMUST00000127264, ENSMUST00000137200, ENSMUST00000151682, ENSMUST00000154652
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF090866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB526103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF583740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF737877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO810099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV557123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000042842   ⟹   ENSMUSP00000045547
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl935,452,076 - 35,507,651 (+)Ensembl
RefSeq Acc Id: ENSMUST00000119129   ⟹   ENSMUSP00000113977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl935,421,558 - 35,507,652 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127264   ⟹   ENSMUSP00000115216
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl935,457,478 - 35,470,085 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137200   ⟹   ENSMUSP00000116553
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl935,421,554 - 35,455,340 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151682   ⟹   ENSMUSP00000119206
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl935,421,128 - 35,455,365 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154652   ⟹   ENSMUSP00000117499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl935,423,588 - 35,471,155 (+)Ensembl
RefSeq Acc Id: NM_021339   ⟹   NP_067314
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,363,372 - 35,418,948 (+)NCBI
GRCm38935,452,076 - 35,507,652 (+)NCBI
MGSCv37935,259,661 - 35,315,237 (+)RGD
Celera932,686,755 - 32,744,725 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510507   ⟹   XP_006510570
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,882 - 35,418,948 (+)NCBI
GRCm38935,421,729 - 35,507,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510508   ⟹   XP_006510571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,334,693 - 35,418,948 (+)NCBI
GRCm38935,423,472 - 35,507,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510509   ⟹   XP_006510572
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,334,702 - 35,418,948 (+)NCBI
GRCm38935,424,126 - 35,507,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510510   ⟹   XP_006510573
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,334,669 - 35,418,948 (+)NCBI
GRCm38935,422,848 - 35,507,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510511   ⟹   XP_006510574
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,823 - 35,418,948 (+)NCBI
GRCm38935,421,528 - 35,507,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510512   ⟹   XP_006510575
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,882 - 35,413,524 (+)NCBI
GRCm38935,421,729 - 35,499,540 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510514   ⟹   XP_006510577
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,882 - 35,386,867 (+)NCBI
GRCm38935,421,729 - 35,475,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242581   ⟹   XP_011240883
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,977 - 35,418,948 (+)NCBI
GRCm38935,421,731 - 35,507,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155153   ⟹   XP_036011046
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,334,702 - 35,418,948 (+)NCBI
RefSeq Acc Id: XM_036155154   ⟹   XP_036011047
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,336,177 - 35,418,948 (+)NCBI
RefSeq Acc Id: XM_036155155   ⟹   XP_036011048
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,361,334 - 35,418,948 (+)NCBI
RefSeq Acc Id: XM_036155156   ⟹   XP_036011049
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,336,367 - 35,418,948 (+)NCBI
RefSeq Acc Id: XM_036155157   ⟹   XP_036011050
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,836 - 35,418,948 (+)NCBI
RefSeq Acc Id: XM_036155158   ⟹   XP_036011051
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,333,230 - 35,386,867 (+)NCBI
RefSeq Acc Id: XM_036155159   ⟹   XP_036011052
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,977 - 35,386,867 (+)NCBI
RefSeq Acc Id: XM_036155160   ⟹   XP_036011053
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,334,774 - 35,386,867 (+)NCBI
RefSeq Acc Id: XM_036155161   ⟹   XP_036011054
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,333,230 - 35,386,867 (+)NCBI
RefSeq Acc Id: XM_036155162   ⟹   XP_036011055
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,333,230 - 35,386,867 (+)NCBI
RefSeq Acc Id: XR_004935503
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,882 - 35,418,948 (+)NCBI
RefSeq Acc Id: XR_004935504
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,334,702 - 35,418,948 (+)NCBI
RefSeq Acc Id: XR_004935505
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,336,367 - 35,418,948 (+)NCBI
RefSeq Acc Id: XR_004935506
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,882 - 35,418,948 (+)NCBI
RefSeq Acc Id: XR_004935507
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,332,882 - 35,413,524 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_067314   ⟸   NM_021339
- Peptide Label: precursor
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510574   ⟸   XM_006510511
- Peptide Label: isoform X1
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510570   ⟸   XM_006510507
- Peptide Label: isoform X1
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510575   ⟸   XM_006510512
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006510577   ⟸   XM_006510514
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006510573   ⟸   XM_006510510
- Peptide Label: isoform X1
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510571   ⟸   XM_006510508
- Peptide Label: isoform X1
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510572   ⟸   XM_006510509
- Peptide Label: isoform X1
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240883   ⟸   XM_011242581
- Peptide Label: isoform X1
- UniProtKB: Q32MD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000113977   ⟸   ENSMUST00000119129
RefSeq Acc Id: ENSMUSP00000115216   ⟸   ENSMUST00000127264
RefSeq Acc Id: ENSMUSP00000119206   ⟸   ENSMUST00000151682
RefSeq Acc Id: ENSMUSP00000045547   ⟸   ENSMUST00000042842
RefSeq Acc Id: ENSMUSP00000117499   ⟸   ENSMUST00000154652
RefSeq Acc Id: ENSMUSP00000116553   ⟸   ENSMUST00000137200
RefSeq Acc Id: XP_036011050   ⟸   XM_036155157
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011052   ⟸   XM_036155159
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011051   ⟸   XM_036155158
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011054   ⟸   XM_036155161
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011055   ⟸   XM_036155162
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011046   ⟸   XM_036155153
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011053   ⟸   XM_036155160
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011047   ⟸   XM_036155154
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011049   ⟸   XM_036155156
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011048   ⟸   XM_036155155
- Peptide Label: isoform X1
Promoters
RGD ID:8669160
Promoter ID:EPDNEW_M12611
Type:single initiation site
Name:Cdon_1
Description:Mus musculus cell adhesion molecule-related/down-regulated byoncogenes , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12612  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38935,421,138 - 35,421,198EPDNEW
RGD ID:8669162
Promoter ID:EPDNEW_M12612
Type:multiple initiation site
Name:Cdon_2
Description:Mus musculus cell adhesion molecule-related/down-regulated byoncogenes , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12611  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38935,423,587 - 35,423,647EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926387 AgrOrtholog
Ensembl Genes ENSMUSG00000038119 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000045547 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113977 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115216 UniProtKB/TrEMBL
  ENSMUSP00000116553 UniProtKB/TrEMBL
  ENSMUSP00000117499 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000119206 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000042842 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000119129 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000127264 UniProtKB/TrEMBL
  ENSMUST00000137200 UniProtKB/TrEMBL
  ENSMUST00000151682 UniProtKB/TrEMBL
  ENSMUST00000154652 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CDO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57810 UniProtKB/Swiss-Prot
MGD MGI:1926387 ENTREZGENE
NCBI Gene 57810 ENTREZGENE
PANTHER PTHR44170:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
PhenoGen Cdon PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CDON_MOUSE UniProtKB/Swiss-Prot
  D3Z2P1_MOUSE UniProtKB/TrEMBL
  D6RHA1_MOUSE UniProtKB/TrEMBL
  F6SDC3_MOUSE UniProtKB/TrEMBL
  Q32MD9 ENTREZGENE
  Q3TZM7_MOUSE UniProtKB/TrEMBL
  Q8CE17_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QKV9 UniProtKB/Swiss-Prot
  O88971 UniProtKB/Swiss-Prot