NM_000444.6(PHEX):c.187+1G>A |
single nucleotide variant |
not provided [RCV000518394] |
ChrX:22038538 [GRCh38] ChrX:22056656 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.663+1G>A |
single nucleotide variant |
not provided [RCV000519436] |
ChrX:22077703 [GRCh38] ChrX:22095821 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1030_1038del (p.Pro344_Tyr346del) |
deletion |
not specified [RCV000516208] |
ChrX:22099101..22099109 [GRCh38] ChrX:22117219..22117227 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1037A>G (p.Tyr346Cys) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990519]|not provided [RCV000521636] |
ChrX:22099109 [GRCh38] ChrX:22117227 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
PHEX, 2-BP DEL, 675TC |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011560] |
ChrX:Xp22.2-p22.1 |
pathogenic |
NM_000444.6(PHEX):c.119-1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011561] |
ChrX:22038468 [GRCh38] ChrX:22056586 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.119-1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011562] |
ChrX:22038468 [GRCh38] ChrX:22056586 [GRCh37] ChrX:Xp22.11 |
pathogenic |
PHEX, A-G, NT-429 |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011567] |
ChrX:Xp22.2-p22.1 |
pathogenic |
NM_000444.6(PHEX):c.849+1268G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011568]|not provided [RCV001367140] |
ChrX:22095367 [GRCh38] ChrX:22113485 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
PHEX, IVS4, T-C, +6 |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011570] |
ChrX:Xp22.2-p22.1 |
pathogenic |
NM_000444.6(PHEX):c.1645+6T>A |
single nucleotide variant |
not provided [RCV000520513] |
ChrX:22190508 [GRCh38] ChrX:22208625 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.830T>A (p.Leu277Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011563] |
ChrX:22094080 [GRCh38] ChrX:22112198 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.254G>A (p.Cys85Tyr) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011564]|not provided [RCV001851795] |
ChrX:22047116 [GRCh38] ChrX:22065234 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1664T>C (p.Leu555Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011566]|not provided [RCV001202583] |
ChrX:22212922 [GRCh38] ChrX:22231039 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1699C>T (p.Arg567Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000011569]|not provided [RCV000414471] |
ChrX:22212957 [GRCh38] ChrX:22231074 [GRCh37] ChrX:Xp22.11 |
pathogenic|benign |
NM_000444.6(PHEX):c.1404+2T>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030352] |
ChrX:22133626 [GRCh38] ChrX:22151743 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1589G>A (p.Trp530Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030353]|not provided [RCV001381407] |
ChrX:22190446 [GRCh38] ChrX:22208563 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1949T>C (p.Leu650Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030354]|not provided [RCV001852599] |
ChrX:22226492 [GRCh38] ChrX:22244609 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1999G>T (p.Gly667Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030355]|not provided [RCV001220680] |
ChrX:22227540 [GRCh38] ChrX:22245657 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.318G>A (p.Trp106Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030356]|not provided [RCV001211408] |
ChrX:22047180 [GRCh38] ChrX:22065298 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.349+1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030357]|not provided [RCV000486450] |
ChrX:22047212 [GRCh38] ChrX:22065330 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.884_885dup (p.Met296fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000030358]|not provided [RCV003678979] |
ChrX:22096988..22096989 [GRCh38] ChrX:22115106..22115107 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.5(PHEX):c.1404+9050T>C |
single nucleotide variant |
Lung cancer [RCV000102472] |
ChrX:22142674 [GRCh38] ChrX:22160791 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh38/hg38 Xp22.33-q28(chrX:3092486-155699618)x2 |
copy number gain |
See cases [RCV000050889] |
ChrX:3092486..155699618 [GRCh38] ChrX:3010527..154929279 [GRCh37] ChrX:3020527..154582473 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:20140-155699618)x3 |
copy number gain |
See cases [RCV000050810] |
ChrX:20140..155699618 [GRCh38] ChrX:70140..154929279 [GRCh37] ChrX:10140..154582473 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:20140-155699618)x1 |
copy number loss |
See cases [RCV000050811] |
ChrX:20140..155699618 [GRCh38] ChrX:70140..154929279 [GRCh37] ChrX:10140..154582473 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1 |
copy number loss |
See cases [RCV000050699] |
ChrX:10679..156022206 [GRCh38] ChrX:60679..155251871 [GRCh37] ChrX:679..154905065 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x3 |
copy number gain |
Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050385]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050385]|See cases [RCV000050385] |
ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x1 |
copy number loss |
Global developmental delay [RCV000050386]|See cases [RCV000050386] |
ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3 |
copy number gain |
See cases [RCV000050697] |
ChrX:10679..156022206 [GRCh38] ChrX:60679..155251871 [GRCh37] ChrX:679..154905065 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters |
GRCh38/hg38 Xp22.33-11.22(chrX:10679-52809182)x1 |
copy number loss |
See cases [RCV000051026] |
ChrX:10679..52809182 [GRCh38] ChrX:60679..52838206 [GRCh37] ChrX:679..52854931 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:26101-155999293)x3 |
copy number gain |
See cases [RCV000052322] |
ChrX:26101..155999293 [GRCh38] ChrX:76101..155228958 [GRCh37] ChrX:16101..154882152 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:2790845-155699618)x3 |
copy number gain |
See cases [RCV000052359] |
ChrX:2790845..155699618 [GRCh38] ChrX:2708886..154929279 [GRCh37] ChrX:2718886..154582473 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:237659-156022362)x3 |
copy number gain |
Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]|See cases [RCV000052327] |
ChrX:237659..156022362 [GRCh38] ChrX:154326..155252027 [GRCh37] ChrX:94326..154905221 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:27245-155996431)x3 |
copy number gain |
See cases [RCV000052324] |
ChrX:27245..155996431 [GRCh38] ChrX:77245..155226096 [GRCh37] ChrX:17245..154879290 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.3(chrX:675360-46016699)x3 |
copy number gain |
See cases [RCV000052328] |
ChrX:675360..46016699 [GRCh38] ChrX:636095..45876134 [GRCh37] ChrX:556095..45761078 [NCBI36] ChrX:Xp22.33-11.3 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:40704-156022362)x3 |
copy number gain |
See cases [RCV000052325] |
ChrX:40704..156022362 [GRCh38] ChrX:90704..155252027 [GRCh37] ChrX:30704..154905221 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.11(chrX:22099135-22109767)x0 |
copy number loss |
See cases [RCV000053062] |
ChrX:22099135..22109767 [GRCh38] ChrX:22117253..22127885 [GRCh37] ChrX:22027174..22037806 [NCBI36] ChrX:Xp22.11 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x1 |
copy number loss |
Global developmental delay [RCV000052986]|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052987]|Intellectual functioning disability [RCV000052988]|Global developmental delay [RCV000052989]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052987]|See cases [RCV000052986] |
ChrX:26102..155996431 [GRCh38] ChrX:76102..155226096 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q22.1(chrX:675360-100368517)x1 |
copy number loss |
See cases [RCV000053005] |
ChrX:675360..100368517 [GRCh38] ChrX:636095..99623515 [GRCh37] ChrX:556095..99510171 [NCBI36] ChrX:Xp22.33-q22.1 |
pathogenic |
GRCh38/hg38 Xp22.33-11.23(chrX:10679-48344725)x1 |
copy number loss |
See cases [RCV000052981] |
ChrX:10679..48344725 [GRCh38] ChrX:60679..48204160 [GRCh37] ChrX:679..48089104 [NCBI36] ChrX:Xp22.33-11.23 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:14245-155999293)x1 |
copy number loss |
Hypoplastic left heart [RCV000052982]|See cases [RCV000052982] |
ChrX:14245..155999293 [GRCh38] ChrX:64245..155228958 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.21(chrX:2769041-58055036)x1 |
copy number loss |
See cases [RCV000053007] |
ChrX:2769041..58055036 [GRCh38] ChrX:2687082..58081470 [GRCh37] ChrX:2697082..58098195 [NCBI36] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh38/hg38 Xp22.33-11.21(chrX:26102-57302794)x1 |
copy number loss |
See cases [RCV000052990] |
ChrX:26102..57302794 [GRCh38] ChrX:76102..57329227 [GRCh37] ChrX:16102..57345952 [NCBI36] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh38/hg38 Xp22.33-22.11(chrX:253129-23023165)x1 |
copy number loss |
See cases [RCV000052993] |
ChrX:253129..23023165 [GRCh38] ChrX:169796..23041282 [GRCh37] ChrX:109796..22951203 [NCBI36] ChrX:Xp22.33-22.11 |
pathogenic |
GRCh38/hg38 Xp22.33-11.1(chrX:253129-58271563)x1 |
copy number loss |
See cases [RCV000052994] |
ChrX:253129..58271563 [GRCh38] ChrX:169796..58297997 [GRCh37] ChrX:109796..58314722 [NCBI36] ChrX:Xp22.33-11.1 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x3 |
copy number gain |
Global developmental delay [RCV000052984]|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052985]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052985]|See cases [RCV000052984] |
ChrX:26102..155996431 [GRCh38] ChrX:76102..155226096 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.21(chrX:10679-55550898)x1 |
copy number loss |
Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052971]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052971]|See cases [RCV000052971] |
ChrX:10679..55550898 [GRCh38] ChrX:60679..55577331 [GRCh37] ChrX:679..55594056 [NCBI36] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10479-54179172)x3 |
copy number gain |
See cases [RCV000053817] |
ChrX:10479..54179172 [GRCh38] ChrX:60479..53957191 [GRCh37] ChrX:479..54222330 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022826)x4 |
copy number gain |
See cases [RCV000133654] |
ChrX:10679..156022826 [GRCh38] ChrX:60679..155252491 [GRCh37] ChrX:679..154905685 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.978_979del (p.Tyr327fs) |
microsatellite |
not provided [RCV001062698] |
ChrX:22099048..22099049 [GRCh38] ChrX:22117166..22117167 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2126del (p.Ala709fs) |
deletion |
not provided [RCV001907670] |
ChrX:22245388 [GRCh38] ChrX:22263505 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:70297-58066465)x3 |
copy number gain |
See cases [RCV000239834] |
ChrX:70297..58066465 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.613del (p.Arg205fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001293726]|not provided [RCV002541818] |
ChrX:22077651 [GRCh38] ChrX:22095769 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10701-155978689)x1 |
copy number loss |
See cases [RCV000133792] |
ChrX:10701..155978689 [GRCh38] ChrX:60701..155208354 [GRCh37] ChrX:701..154861548 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10701-52857805)x1 |
copy number loss |
See cases [RCV000133817] |
ChrX:10701..52857805 [GRCh38] ChrX:60701..52886834 [GRCh37] ChrX:701..52903559 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x3 |
copy number gain |
See cases [RCV000050385] |
ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:679..154896026 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x1 |
copy number loss |
See cases [RCV000050386] |
ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:679..154896026 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:14245-155999293)x1 |
copy number loss |
See cases [RCV000052982] |
ChrX:14245..155999293 [GRCh38] ChrX:64245..155228958 [GRCh37] ChrX:4245..154882152 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x3 |
copy number gain |
See cases [RCV000052984] |
ChrX:26102..155996431 [GRCh38] ChrX:76102..155226096 [GRCh37] ChrX:16102..154879290 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x1 |
copy number loss |
See cases [RCV000052986] |
ChrX:26102..155996431 [GRCh38] ChrX:76102..155226096 [GRCh37] ChrX:16102..154879290 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.23(chrX:10679-50059388)x1 |
copy number loss |
See cases [RCV000133745] |
ChrX:10679..50059388 [GRCh38] ChrX:60679..49824045 [GRCh37] ChrX:679..49710785 [NCBI36] ChrX:Xp22.33-11.23 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:20297-155999253)x3 |
copy number gain |
See cases [RCV000134564] |
ChrX:20297..155999253 [GRCh38] ChrX:70297..155228918 [GRCh37] ChrX:10297..154882112 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q11.1(chrX:10701-62712219)x1 |
copy number loss |
See cases [RCV000134568] |
ChrX:10701..62712219 [GRCh38] ChrX:60701..61931689 [GRCh37] ChrX:701..61848414 [NCBI36] ChrX:Xp22.33-q11.1 |
pathogenic |
GRCh38/hg38 Xp22.33-11.21(chrX:10701-58055053)x1 |
copy number loss |
See cases [RCV000134026] |
ChrX:10701..58055053 [GRCh38] ChrX:60701..58081487 [GRCh37] ChrX:701..58098212 [NCBI36] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003242)x1 |
copy number loss |
See cases [RCV000133947] |
ChrX:10701..156003242 [GRCh38] ChrX:60701..155232907 [GRCh37] ChrX:701..154886101 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters |
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003242)x3 |
copy number gain |
See cases [RCV000133911] |
ChrX:10701..156003242 [GRCh38] ChrX:60701..155232907 [GRCh37] ChrX:701..154886101 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic|likely pathogenic|conflicting data from submitters |
GRCh38/hg38 Xp22.33-q28(chrX:20297-156026127)x1 |
copy number loss |
See cases [RCV000135321] |
ChrX:20297..156026127 [GRCh38] ChrX:70297..155255792 [GRCh37] ChrX:10297..154908986 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.31-11.22(chrX:8176030-53962833)x1 |
copy number loss |
See cases [RCV000135305] |
ChrX:8176030..53962833 [GRCh38] ChrX:8144071..53989266 [GRCh37] ChrX:8104071..54005991 [NCBI36] ChrX:Xp22.31-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-21.1(chrX:233335-37292980)x1 |
copy number loss |
See cases [RCV000135299] |
ChrX:233335..37292980 [GRCh38] ChrX:150002..37152232 [GRCh37] ChrX:90002..37037153 [NCBI36] ChrX:Xp22.33-21.1 |
pathogenic |
GRCh38/hg38 Xp22.2-22.11(chrX:15173626-23952585)x2 |
copy number gain |
See cases [RCV000134875] |
ChrX:15173626..23952585 [GRCh38] ChrX:15191748..23970702 [GRCh37] ChrX:15101669..23880623 [NCBI36] ChrX:Xp22.2-22.11 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10679-52857805)x3 |
copy number gain |
See cases [RCV000134957] |
ChrX:10679..52857805 [GRCh38] ChrX:60679..52886834 [GRCh37] ChrX:679..52903559 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-21.1(chrX:10679-36186635)x1 |
copy number loss |
See cases [RCV000135551] |
ChrX:10679..36186635 [GRCh38] ChrX:60679..36202463 [GRCh37] ChrX:679..36114673 [NCBI36] ChrX:Xp22.33-21.1 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:40904-155998166)x1 |
copy number loss |
See cases [RCV000136478] |
ChrX:40904..155998166 [GRCh38] ChrX:90904..155227831 [GRCh37] ChrX:30904..154881025 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003229)x1 |
copy number loss |
See cases [RCV000136097] |
ChrX:10701..156003229 [GRCh38] ChrX:60701..155232894 [GRCh37] ChrX:701..154886088 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q25(chrX:10701-128393708) |
copy number loss |
See cases [RCV000136094] |
ChrX:10701..128393708 [GRCh38] ChrX:60701..127527686 [GRCh37] ChrX:701..127355367 [NCBI36] ChrX:Xp22.33-q25 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10001-156030895)x1 |
copy number loss |
See cases [RCV000136005] |
ChrX:10001..156030895 [GRCh38] ChrX:60001..155260560 [GRCh37] ChrX:1..154913754 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10679-52213731)x1 |
copy number loss |
See cases [RCV000137112] |
ChrX:10679..52213731 [GRCh38] ChrX:60679..51948998 [GRCh37] ChrX:679..51973598 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic|uncertain significance |
GRCh38/hg38 Xp22.33-q13.3(chrX:10679-76420505)x3 |
copy number gain |
See cases [RCV000137137] |
ChrX:10679..76420505 [GRCh38] ChrX:60679..75640898 [GRCh37] ChrX:679..75557302 [NCBI36] ChrX:Xp22.33-q13.3 |
pathogenic|likely benign |
GRCh38/hg38 Xp22.33-q28(chrX:2782275-155611794)x2 |
copy number gain |
See cases [RCV000136841] |
ChrX:2782275..155611794 [GRCh38] ChrX:2700316..154785891 [GRCh37] ChrX:2710316..154494649 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:2765636-155522304)x3 |
copy number gain |
See cases [RCV000136791] |
ChrX:2765636..155522304 [GRCh38] ChrX:2683677..154751965 [GRCh37] ChrX:2693677..154405159 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10701-52033734)x1 |
copy number loss |
See cases [RCV000137430] |
ChrX:10701..52033734 [GRCh38] ChrX:60701..51776830 [GRCh37] ChrX:701..51793570 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-11.21(chrX:10701-58055036)x1 |
copy number loss |
See cases [RCV000137552] |
ChrX:10701..58055036 [GRCh38] ChrX:60701..58081470 [GRCh37] ChrX:701..58098195 [NCBI36] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh38/hg38 Xp22.33-11.23(chrX:10679-49157514)x1 |
copy number loss |
See cases [RCV000137166] |
ChrX:10679..49157514 [GRCh38] ChrX:60679..49016667 [GRCh37] ChrX:679..48903611 [NCBI36] ChrX:Xp22.33-11.23 |
pathogenic |
GRCh38/hg38 Xp22.33-11.23(chrX:10701-49071220)x1 |
copy number loss |
See cases [RCV000137413] |
ChrX:10701..49071220 [GRCh38] ChrX:60701..48928877 [GRCh37] ChrX:701..48815821 [NCBI36] ChrX:Xp22.33-11.23 |
pathogenic |
GRCh38/hg38 Xp22.2-21.2(chrX:12254555-30410580)x1 |
copy number loss |
See cases [RCV000138069] |
ChrX:12254555..30410580 [GRCh38] ChrX:12272674..30428697 [GRCh37] ChrX:12182595..30338618 [NCBI36] ChrX:Xp22.2-21.2 |
pathogenic|likely pathogenic |
GRCh38/hg38 Xp22.33-21.1(chrX:10701-37723318)x1 |
copy number loss |
See cases [RCV000138019] |
ChrX:10701..37723318 [GRCh38] ChrX:60701..37318587 [GRCh37] ChrX:701..37467510 [NCBI36] ChrX:Xp22.33-21.1 |
pathogenic |
GRCh38/hg38 Xp22.33-q22.3(chrX:10701-106113403)x1 |
copy number loss |
See cases [RCV000137886] |
ChrX:10701..106113403 [GRCh38] ChrX:60701..105357395 [GRCh37] ChrX:701..105244051 [NCBI36] ChrX:Xp22.33-q22.3 |
pathogenic |
GRCh38/hg38 Xp22.2-q27.3(chrX:13020141-143473520)x1 |
copy number loss |
See cases [RCV000138678] |
ChrX:13020141..143473520 [GRCh38] ChrX:13038260..142561303 [GRCh37] ChrX:12948181..142388969 [NCBI36] ChrX:Xp22.2-q27.3 |
pathogenic |
GRCh38/hg38 Xp22.33-11.1(chrX:10701-58517661)x1 |
copy number loss |
See cases [RCV000139343] |
ChrX:10701..58517661 [GRCh38] ChrX:60701..58544094 [GRCh37] ChrX:701..58560819 [NCBI36] ChrX:Xp22.33-11.1 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:1085618-155699644)x1 |
copy number loss |
See cases [RCV000139278] |
ChrX:1085618..155699644 [GRCh38] ChrX:1118268..154929305 [GRCh37] ChrX:1038268..154582499 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q21.31(chrX:10701-88318651)x1 |
copy number loss |
See cases [RCV000139352] |
ChrX:10701..88318651 [GRCh38] ChrX:60701..87573652 [GRCh37] ChrX:701..87460308 [NCBI36] ChrX:Xp22.33-q21.31 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004181)x3 |
copy number gain |
See cases [RCV000139888] |
ChrX:251880..156004181 [GRCh38] ChrX:168547..155233846 [GRCh37] ChrX:108547..154887040 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.4(chrX:3909315-38682287)x3 |
copy number gain |
See cases [RCV000141261] |
ChrX:3909315..38682287 [GRCh38] ChrX:3827356..38541541 [GRCh37] ChrX:3837356..38426485 [NCBI36] ChrX:Xp22.33-11.4 |
uncertain significance |
GRCh38/hg38 Xp22.33-q28(chrX:2299223-155992188)x3 |
copy number gain |
See cases [RCV000141400] |
ChrX:2299223..155992188 [GRCh38] ChrX:2217264..155221853 [GRCh37] ChrX:2227264..154875047 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:20297-156016920)x3 |
copy number gain |
See cases [RCV000141401] |
ChrX:20297..156016920 [GRCh38] ChrX:70297..155246585 [GRCh37] ChrX:10297..154899779 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x4 |
copy number gain |
See cases [RCV000140786] |
ChrX:251880..156004066 [GRCh38] ChrX:168547..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10701-53750424)x1 |
copy number loss |
See cases [RCV000140711] |
ChrX:10701..53750424 [GRCh38] ChrX:60701..53776922 [GRCh37] ChrX:701..53793647 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x1 |
copy number loss |
See cases [RCV000140787] |
ChrX:251880..156004066 [GRCh38] ChrX:168547..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic|conflicting data from submitters |
GRCh38/hg38 Xp22.33-11.22(chrX:251879-50289363)x1 |
copy number loss |
See cases [RCV000141741] |
ChrX:251879..50289363 [GRCh38] ChrX:168546..50032363 [GRCh37] ChrX:108546..50049103 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q12(chrX:251880-66445845)x1 |
copy number loss |
See cases [RCV000142334] |
ChrX:251880..66445845 [GRCh38] ChrX:168547..65665687 [GRCh37] ChrX:108547..65582412 [NCBI36] ChrX:Xp22.33-q12 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:251880-51643625)x1 |
copy number loss |
See cases [RCV000142035] |
ChrX:251880..51643625 [GRCh38] ChrX:168547..51386559 [GRCh37] ChrX:108547..51403299 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q24(chrX:251879-118847157)x3 |
copy number gain |
See cases [RCV000142134] |
ChrX:251879..118847157 [GRCh38] ChrX:168546..117981120 [GRCh37] ChrX:108546..117865148 [NCBI36] ChrX:Xp22.33-q24 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003229)x3 |
copy number gain |
See cases [RCV000142625] |
ChrX:10701..156003229 [GRCh38] ChrX:60701..155232894 [GRCh37] ChrX:701..154886088 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:251879-156004066)x1 |
copy number loss |
See cases [RCV000143441] |
ChrX:251879..156004066 [GRCh38] ChrX:168546..155233731 [GRCh37] ChrX:108546..154886925 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:251879-156004066)x3 |
copy number gain |
See cases [RCV000143433] |
ChrX:251879..156004066 [GRCh38] ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.22(chrX:10701-53131191)x1 |
copy number loss |
See cases [RCV000143348] |
ChrX:10701..53131191 [GRCh38] ChrX:60701..53047381 [GRCh37] ChrX:701..53177098 [NCBI36] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x3 |
copy number gain |
See cases [RCV000143219] |
ChrX:251880..156004066 [GRCh38] ChrX:168547..155233731 [GRCh37] ChrX:108547..154886925 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-11.21(chrX:251879-56428859)x1 |
copy number loss |
See cases [RCV000143130] |
ChrX:251879..56428859 [GRCh38] ChrX:168546..56455292 [GRCh37] ChrX:108546..56472017 [NCBI36] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh38/hg38 Xp22.33-21.1(chrX:251879-35885004)x1 |
copy number loss |
See cases [RCV000143496] |
ChrX:251879..35885004 [GRCh38] ChrX:168546..35903121 [GRCh37] ChrX:108546..35813042 [NCBI36] ChrX:Xp22.33-21.1 |
pathogenic |
GRCh38/hg38 Xp22.11(chrX:22173842-22186370)x2 |
copy number gain |
See cases [RCV000143466] |
ChrX:22173842..22186370 [GRCh38] ChrX:22191959..22204487 [GRCh37] ChrX:22101880..22114408 [NCBI36] ChrX:Xp22.11 |
uncertain significance |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3 |
copy number gain |
See cases [RCV000148141] |
ChrX:10679..156022206 [GRCh38] ChrX:60679..155251871 [GRCh37] ChrX:679..154905065 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1 |
copy number loss |
See cases [RCV000148135] |
ChrX:10679..156022206 [GRCh38] ChrX:60679..155251871 [GRCh37] ChrX:679..154905065 [NCBI36] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.2214G>A (p.Thr738=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001168751]|not provided [RCV000176266] |
ChrX:22247917 [GRCh38] ChrX:22266034 [GRCh37] ChrX:Xp22.11 |
likely benign|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.134T>A (p.Leu45Ter) |
single nucleotide variant |
not provided [RCV000254763] |
ChrX:22038484 [GRCh38] ChrX:22056602 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1209G>A (p.Trp403Ter) |
single nucleotide variant |
not provided [RCV000254850] |
ChrX:22114493 [GRCh38] ChrX:22132611 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1204C>T (p.Gln402Ter) |
single nucleotide variant |
not provided [RCV000254872] |
ChrX:22114488 [GRCh38] ChrX:22132606 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1363G>T (p.Glu455Ter) |
single nucleotide variant |
not provided [RCV000255187] |
ChrX:22133583 [GRCh38] ChrX:22151700 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.850del (p.Glu283_Ile284insTer) |
deletion |
not provided [RCV000255244] |
ChrX:22096955 [GRCh38] ChrX:22115073 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:71267-155246643)x3 |
copy number gain |
See cases [RCV000240122] |
ChrX:71267..155246643 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:176426-155250222)x3 |
copy number gain |
See cases [RCV000239843] |
ChrX:176426..155250222 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:70297-58066465)x1 |
copy number loss |
See cases [RCV000239814] |
ChrX:70297..58066465 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:71267-155255839)x1 |
copy number loss |
See cases [RCV000239832] |
ChrX:71267..155255839 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.10G>C (p.Glu4Gln) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000366699]|PHEX-related disorder [RCV003955245]|not provided [RCV002057060]|not specified [RCV000435979] |
ChrX:22033015 [GRCh38] ChrX:22051133 [GRCh37] ChrX:Xp22.11 |
benign|likely benign|conflicting interpretations of pathogenicity |
GRCh37/hg19 Xp22.2-q28(chrX:13147668-155250222)x3 |
copy number gain |
See cases [RCV000239798] |
ChrX:13147668..155250222 [GRCh37] ChrX:Xp22.2-q28 |
pathogenic |
NM_000444.6(PHEX):c.1735G>A (p.Gly579Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000211521]|Vitamin D-dependent rickets, type 2 [RCV000578203]|not provided [RCV000396672] |
ChrX:22219070 [GRCh38] ChrX:22237187 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity |
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255839)x3 |
copy number gain |
See cases [RCV000239934] |
ChrX:70297..155255839 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:150002-155234036)x2 |
copy number gain |
See cases [RCV000240106] |
ChrX:150002..155234036 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:553069-155233731)x1 |
copy number loss |
See cases [RCV000446026] |
ChrX:553069..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:71267-155224766)x1 |
copy number loss |
See cases [RCV000239902] |
ChrX:71267..155224766 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:60701-155246271)x3 |
copy number gain |
See cases [RCV000239989] |
ChrX:60701..155246271 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1899+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990540]|not provided [RCV000516827] |
ChrX:22221744 [GRCh38] ChrX:22239861 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:71267-155234036)x2 |
copy number gain |
See cases [RCV000239874] |
ChrX:71267..155234036 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:176426-155236656)x3 |
copy number gain |
See cases [RCV000240552] |
ChrX:176426..155236656 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:150002-155234036)x3 |
copy number gain |
See cases [RCV000240314] |
ChrX:150002..155234036 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:225816-155234036)x2 |
copy number gain |
See cases [RCV000240464] |
ChrX:225816..155234036 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1079+1G>A |
single nucleotide variant |
not provided [RCV000255760] |
ChrX:22099152 [GRCh38] ChrX:22117270 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1769-10C>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000286035]|not provided [RCV001514162]|not specified [RCV000244555] |
ChrX:22221603 [GRCh38] ChrX:22239720 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.221_222del (p.Val74fs) |
microsatellite |
not provided [RCV000256035] |
ChrX:22047081..22047082 [GRCh38] ChrX:22065199..22065200 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-21.1(chrX:71267-35809046)x1 |
copy number loss |
See cases [RCV000240335] |
ChrX:71267..35809046 [GRCh37] ChrX:Xp22.33-21.1 |
pathogenic |
NM_000444.6(PHEX):c.538del (p.Trp180fs) |
deletion |
not provided [RCV000256152] |
ChrX:22077575 [GRCh38] ChrX:22095693 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-21.3(chrX:1378591-25940311)x2 |
copy number gain |
See cases [RCV000240441] |
ChrX:1378591..25940311 [GRCh37] ChrX:Xp22.33-21.3 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:2707626-155250222)x2 |
copy number gain |
See cases [RCV000240541] |
ChrX:2707626..155250222 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.*48G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000291816] |
ChrX:22248001 [GRCh38] ChrX:22266118 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.489A>G (p.Ser163=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000277994]|not provided [RCV000901480]|not specified [RCV000439287] |
ChrX:22077528 [GRCh38] ChrX:22095646 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.700G>A (p.Asp234Asn) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000355092] |
ChrX:22090465 [GRCh38] ChrX:22108583 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.*388A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000356831] |
ChrX:22248341 [GRCh38] ChrX:22266458 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1587-1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001169961]|not provided [RCV000269158] |
ChrX:22190443 [GRCh38] ChrX:22208560 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1434T>A (p.Tyr478Ter) |
single nucleotide variant |
not provided [RCV000273379] |
ChrX:22168341 [GRCh38] ChrX:22186458 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.779dup (p.Leu260fs) |
duplication |
not provided [RCV000275480] |
ChrX:22094025..22094026 [GRCh38] ChrX:22112143..22112144 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1843dup (p.Thr615fs) |
duplication |
not provided [RCV000280710] |
ChrX:22221681..22221682 [GRCh38] ChrX:22239798..22239799 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.448A>T (p.Lys150Ter) |
single nucleotide variant |
not provided [RCV000281027] |
ChrX:22077487 [GRCh38] ChrX:22095605 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1645C>T (p.Arg549Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250611]|not provided [RCV000280838] |
ChrX:22190502 [GRCh38] ChrX:22208619 [GRCh37] ChrX:Xp22.11 |
pathogenic|benign |
NM_000444.6(PHEX):c.1979G>A (p.Trp660Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505395]|Hypophosphatemic rickets [RCV001843505]|not provided [RCV000285863] |
ChrX:22227520 [GRCh38] ChrX:22245637 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1675T>C (p.Phe559Leu) |
single nucleotide variant |
not provided [RCV000340711] |
ChrX:22212933 [GRCh38] ChrX:22231050 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.*250A>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000311519] |
ChrX:22248203 [GRCh38] ChrX:22266320 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.118+7G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000312989]|Hypophosphatemic rickets [RCV001843517]|PHEX-related disorder [RCV003950312]|not provided [RCV000920929]|not specified [RCV001796022] |
ChrX:22033130 [GRCh38] ChrX:22051248 [GRCh37] ChrX:Xp22.11 |
benign|likely benign|uncertain significance |
NM_000444.6(PHEX):c.2060_2063dup (p.Tyr688Ter) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002248502]|not provided [RCV000291546] |
ChrX:22227599..22227600 [GRCh38] ChrX:22245716..22245717 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.617T>A (p.Leu206Ter) |
single nucleotide variant |
not provided [RCV000295872] |
ChrX:22077656 [GRCh38] ChrX:22095774 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.664-1G>A |
single nucleotide variant |
not provided [RCV000297789] |
ChrX:22090428 [GRCh38] ChrX:22108546 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.33T>C (p.Thr11=) |
single nucleotide variant |
not provided [RCV000378137] |
ChrX:22033038 [GRCh38] ChrX:22051156 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1917C>A (p.Thr639=) |
single nucleotide variant |
not provided [RCV000378480] |
ChrX:22226460 [GRCh38] ChrX:22244577 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.285C>G (p.Pro95=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000367901] |
ChrX:22047147 [GRCh38] ChrX:22065265 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1935_1938dup (p.Asn647Ter) |
duplication |
not provided [RCV000306173] |
ChrX:22226477..22226478 [GRCh38] ChrX:22244594..22244595 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1828_1829dup (p.Phe611fs) |
duplication |
not provided [RCV000309078] |
ChrX:22221669..22221670 [GRCh38] ChrX:22239786..22239787 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1080-2A>G |
single nucleotide variant |
not provided [RCV000309115] |
ChrX:22111465 [GRCh38] ChrX:22129583 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2193del (p.Phe731fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505421]|not provided [RCV000307183] |
ChrX:22247893 [GRCh38] ChrX:22266010 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1025G>A (p.Arg342His) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000319071]|not provided [RCV002523830] |
ChrX:22099097 [GRCh38] ChrX:22117215 [GRCh37] ChrX:Xp22.11 |
benign|uncertain significance |
NM_000444.6(PHEX):c.2138dup (p.Gln714fs) |
duplication |
not provided [RCV000311640] |
ChrX:22245395..22245396 [GRCh38] ChrX:22263512..22263513 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2104C>T (p.Arg702Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505471]|PHEX-related disorder [RCV003401222]|not provided [RCV000315034]|not specified [RCV003483600] |
ChrX:22245366 [GRCh38] ChrX:22263483 [GRCh37] ChrX:Xp22.11 |
pathogenic|benign |
NM_000444.6(PHEX):c.1309dup (p.Glu437fs) |
duplication |
not provided [RCV000317020] |
ChrX:22133527..22133528 [GRCh38] ChrX:22151644..22151645 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1368G>C (p.Trp456Cys) |
single nucleotide variant |
not provided [RCV000413461] |
ChrX:22133588 [GRCh38] ChrX:22151705 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.-10G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000307289]|not provided [RCV000767333] |
ChrX:22032996 [GRCh38] ChrX:22051114 [GRCh37] ChrX:Xp22.11 |
uncertain significance|not provided |
NM_000444.6(PHEX):c.1374T>C (p.Asp458=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000320407]|not provided [RCV003766115] |
ChrX:22133594 [GRCh38] ChrX:22151711 [GRCh37] ChrX:Xp22.11 |
likely benign|uncertain significance |
NM_000444.6(PHEX):c.1026C>T (p.Arg342=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000373854] |
ChrX:22099098 [GRCh38] ChrX:22117216 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1779_1782dup (p.Lys595Ter) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505494]|not provided [RCV000316029] |
ChrX:22221622..22221623 [GRCh38] ChrX:22239740..22239743 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1854_1857dup (p.Asn620delinsAspTer) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990538]|not provided [RCV000321756] |
ChrX:22221696..22221697 [GRCh38] ChrX:22239813..22239814 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1685dup (p.Thr563fs) |
duplication |
not provided [RCV000322938] |
ChrX:22212939..22212940 [GRCh38] ChrX:22231056..22231057 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1800dup (p.Pro601fs) |
duplication |
not provided [RCV000324307] |
ChrX:22221643..22221644 [GRCh38] ChrX:22239760..22239761 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1206A>G (p.Gln402=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000284021]|not provided [RCV000882843]|not specified [RCV000427694] |
ChrX:22114490 [GRCh38] ChrX:22132608 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.2147+1G>A |
single nucleotide variant |
not provided [RCV000329994] |
ChrX:22245410 [GRCh38] ChrX:22263527 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1768+1G>C |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843305]|not provided [RCV000330628] |
ChrX:22219104 [GRCh38] ChrX:22237221 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1543C>T (p.Gln515Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505394]|not provided [RCV000333172] |
ChrX:22178333 [GRCh38] ChrX:22196450 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1241del (p.Leu414fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV004545878]|not provided [RCV000335413] |
ChrX:22114525 [GRCh38] ChrX:22132643 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|benign |
NM_000444.6(PHEX):c.1586+3_1586+6del |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505446]|not provided [RCV000316107] |
ChrX:22178375..22178378 [GRCh38] ChrX:22196496..22196499 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.-108A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000286873] |
ChrX:22032898 [GRCh38] ChrX:22051016 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1655C>T (p.Ala552Val) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000379705] |
ChrX:22212913 [GRCh38] ChrX:22231030 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1645+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505469]|not provided [RCV000336154] |
ChrX:22190503 [GRCh38] ChrX:22208620 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.154G>T (p.Glu52Ter) |
single nucleotide variant |
not provided [RCV000336630] |
ChrX:22038504 [GRCh38] ChrX:22056622 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.67del (p.Leu23fs) |
deletion |
not provided [RCV000343368] |
ChrX:22033070 [GRCh38] ChrX:22051188 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2064T>A (p.Tyr688Ter) |
single nucleotide variant |
not provided [RCV000346510] |
ChrX:22227605 [GRCh38] ChrX:22245722 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.508_529del (p.Leu170fs) |
deletion |
not provided [RCV000346647] |
ChrX:22077545..22077566 [GRCh38] ChrX:22095663..22095684 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1080-1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000763206]|not provided [RCV000350821] |
ChrX:22111466 [GRCh38] ChrX:22129584 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2239C>T (p.Arg747Ter) |
single nucleotide variant |
Autosomal dominant hypophosphatemic rickets [RCV002221523]|Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505449]|not provided [RCV000351204] |
ChrX:22247942 [GRCh38] ChrX:22266059 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|benign |
NM_000444.6(PHEX):c.2052C>T (p.Phe684=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000405090] |
ChrX:22227593 [GRCh38] ChrX:22245710 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.537T>A (p.Val179=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000332927]|not provided [RCV000901481]|not specified [RCV000422054] |
ChrX:22077576 [GRCh38] ChrX:22095694 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.*227C>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000405914]|PHEX-related disorder [RCV003902450] |
ChrX:22248180 [GRCh38] ChrX:22266297 [GRCh37] ChrX:Xp22.11 |
likely benign|uncertain significance |
NM_000444.6(PHEX):c.81C>T (p.Val27=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000394191]|not provided [RCV000959721] |
ChrX:22033086 [GRCh38] ChrX:22051204 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1367G>A (p.Trp456Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505473]|not provided [RCV000368437] |
ChrX:22133587 [GRCh38] ChrX:22151704 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1586_1586+1del |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002265718]|not provided [RCV000369200] |
ChrX:22178374..22178375 [GRCh38] ChrX:22196491..22196492 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.941G>A (p.Trp314Ter) |
single nucleotide variant |
not provided [RCV000374807] |
ChrX:22099013 [GRCh38] ChrX:22117131 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.733-1G>A |
single nucleotide variant |
not provided [RCV000375232] |
ChrX:22093982 [GRCh38] ChrX:22112100 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1806G>A (p.Trp602Ter) |
single nucleotide variant |
See cases [RCV002287401]|not provided [RCV000375259] |
ChrX:22221650 [GRCh38] ChrX:22239767 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.957G>A (p.Lys319=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000259231]|not provided [RCV002523829]|not specified [RCV000517603] |
ChrX:22099029 [GRCh38] ChrX:22117147 [GRCh37] ChrX:Xp22.11 |
benign|uncertain significance |
NM_000444.6(PHEX):c.-90A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000341947]|not provided [RCV001662359] |
ChrX:22032916 [GRCh38] ChrX:22051034 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.*360A>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000396930] |
ChrX:22248313 [GRCh38] ChrX:22266430 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1936_1939dup (p.Asn647delinsArgTer) |
duplication |
not provided [RCV000380313] |
ChrX:22226478..22226479 [GRCh38] ChrX:22244595..22244596 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2048_2051dup (p.Phe685fs) |
duplication |
not provided [RCV000383530] |
ChrX:22227588..22227589 [GRCh38] ChrX:22245705..22245706 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.847_849+2del |
deletion |
not provided [RCV000390548] |
ChrX:22094096..22094100 [GRCh38] ChrX:22112214..22112218 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.*361T>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000298739] |
ChrX:22248314 [GRCh38] ChrX:22266431 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1701-2A>G |
single nucleotide variant |
not provided [RCV000394268] |
ChrX:22219034 [GRCh38] ChrX:22237151 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2071-1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505481]|not provided [RCV000392446] |
ChrX:22245332 [GRCh38] ChrX:22263449 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1989_1990del (p.Asp663fs) |
deletion |
not provided [RCV000399109] |
ChrX:22227529..22227530 [GRCh38] ChrX:22245646..22245647 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1158G>A (p.Trp386Ter) |
single nucleotide variant |
not provided [RCV000402891] |
ChrX:22111545 [GRCh38] ChrX:22129663 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1966-11T>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000345629]|not provided [RCV001512379] |
ChrX:22227496 [GRCh38] ChrX:22245613 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.*218A>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000346613]|not provided [RCV001570160] |
ChrX:22248171 [GRCh38] ChrX:22266288 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.733-2A>T |
single nucleotide variant |
not provided [RCV000402064] |
ChrX:22093981 [GRCh38] ChrX:22112099 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1713T>G (p.Tyr571Ter) |
single nucleotide variant |
not provided [RCV000405748] |
ChrX:22219048 [GRCh38] ChrX:22237165 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.-33C>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000405731]|not provided [RCV001672739] |
ChrX:22032973 [GRCh38] ChrX:22051091 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1202C>T (p.Pro401Leu) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001167037]|not provided [RCV000265639] |
ChrX:22114486 [GRCh38] ChrX:22132604 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1344C>T (p.Asp448=) |
single nucleotide variant |
not provided [RCV000726108]|not specified [RCV000369665] |
ChrX:22133564 [GRCh38] ChrX:22151681 [GRCh37] ChrX:Xp22.11 |
likely benign|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.*339A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000352300] |
ChrX:22248292 [GRCh38] ChrX:22266409 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1601C>T (p.Pro534Leu) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505461]|Hypophosphatemic rickets [RCV001843504]|not provided [RCV000260839] |
ChrX:22190458 [GRCh38] ChrX:22208575 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.312T>G (p.Tyr104Ter) |
single nucleotide variant |
not provided [RCV000490200] |
ChrX:22047174 [GRCh38] ChrX:22065292 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1809G>A (p.Trp603Ter) |
single nucleotide variant |
not provided [RCV000489292] |
ChrX:22221653 [GRCh38] ChrX:22239770 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1027G>A (p.Val343Ile) |
single nucleotide variant |
not provided [RCV001367830] |
ChrX:22099099 [GRCh38] ChrX:22117217 [GRCh37] ChrX:Xp22.11 |
benign|uncertain significance |
NM_000444.6(PHEX):c.611T>A (p.Ile204Asn) |
single nucleotide variant |
not provided [RCV000489507] |
ChrX:22077650 [GRCh38] ChrX:22095768 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1645+5G>C |
single nucleotide variant |
not provided [RCV000489771] |
ChrX:22190507 [GRCh38] ChrX:22208624 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.2-q25(chrX:11692290-121187337)x2 |
copy number gain |
not provided [RCV000488046] |
ChrX:11692290..121187337 [GRCh37] ChrX:Xp22.2-q25 |
uncertain significance |
NM_000444.6(PHEX):c.1880G>A (p.Trp627Ter) |
single nucleotide variant |
not provided [RCV000489955] |
ChrX:22221724 [GRCh38] ChrX:22239841 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1366T>C (p.Trp456Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505465]|not provided [RCV000488975] |
ChrX:22133586 [GRCh38] ChrX:22151703 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity |
NM_000444.6(PHEX):c.501G>A (p.Trp167Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000625611]|not provided [RCV001218566] |
ChrX:22077540 [GRCh38] ChrX:22095658 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2071-5_2071-4delinsAG |
indel |
not specified [RCV000600460] |
ChrX:22245328..22245329 [GRCh38] ChrX:22263445..22263446 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1218T>A (p.Cys406Ter) |
single nucleotide variant |
not provided [RCV000579166] |
ChrX:22114502 [GRCh38] ChrX:22132620 [GRCh37] ChrX:Xp22.11 |
pathogenic |
Single allele |
duplication |
Syndromic X-linked intellectual disability Lubs type [RCV000768455] |
ChrX:15323210..153542100 [GRCh37] ChrX:Xp22.2-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-22.11(chrX:801301-23768392) |
copy number gain |
not provided [RCV000767802] |
ChrX:801301..23768392 [GRCh37] ChrX:Xp22.33-22.11 |
pathogenic |
NM_000444.6(PHEX):c.2159C>A (p.Ala720Glu) |
single nucleotide variant |
not provided [RCV000414545] |
ChrX:22247862 [GRCh38] ChrX:22265979 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1715G>T (p.Gly572Val) |
single nucleotide variant |
not provided [RCV000414654] |
ChrX:22219050 [GRCh38] ChrX:22237167 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2167_2170dup (p.Phe724Ter) |
duplication |
Bowing of the legs [RCV000414906] |
ChrX:22247868..22247869 [GRCh38] ChrX:22265985..22265986 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.*231A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001809791]|not provided [RCV000734002] |
ChrX:22248184 [GRCh38] ChrX:22266301 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity |
NM_000444.6(PHEX):c.1173+2T>C |
single nucleotide variant |
not provided [RCV000412709] |
ChrX:22111562 [GRCh38] ChrX:22129680 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1586+6T>G |
single nucleotide variant |
not provided [RCV000412767] |
ChrX:22178382 [GRCh38] ChrX:22196499 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.871C>T (p.Arg291Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505415]|Hypophosphatemic rickets [RCV001843518]|not provided [RCV000412793]|not specified [RCV003483609] |
ChrX:22096976 [GRCh38] ChrX:22115094 [GRCh37] ChrX:Xp22.11 |
pathogenic|benign |
NM_000444.6(PHEX):c.436+1G>C |
single nucleotide variant |
not provided [RCV000412890] |
ChrX:22076475 [GRCh38] ChrX:22094593 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1736G>T (p.Gly579Val) |
single nucleotide variant |
not provided [RCV000412906] |
ChrX:22219071 [GRCh38] ChrX:22237188 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1768+2dup |
duplication |
not provided [RCV000412973] |
ChrX:22219104..22219105 [GRCh38] ChrX:22237221..22237222 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1313T>C (p.Leu438Ser) |
single nucleotide variant |
not provided [RCV000413016] |
ChrX:22133533 [GRCh38] ChrX:22151650 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1700G>C (p.Arg567Pro) |
single nucleotide variant |
not provided [RCV000413078] |
ChrX:22212958 [GRCh38] ChrX:22231075 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity |
NM_000444.6(PHEX):c.1180C>T (p.Gln394Ter) |
single nucleotide variant |
not provided [RCV000413207] |
ChrX:22114464 [GRCh38] ChrX:22132582 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.663+2T>A |
single nucleotide variant |
not provided [RCV000413368] |
ChrX:22077704 [GRCh38] ChrX:22095822 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2237G>T (p.Cys746Phe) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV004545879]|not provided [RCV000413405] |
ChrX:22247940 [GRCh38] ChrX:22266057 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|benign |
NM_000444.6(PHEX):c.2070+1G>A |
single nucleotide variant |
not provided [RCV000413408] |
ChrX:22227612 [GRCh38] ChrX:22245729 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.500G>A (p.Trp167Ter) |
single nucleotide variant |
not provided [RCV000413519] |
ChrX:22077539 [GRCh38] ChrX:22095657 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2198G>A (p.Cys733Tyr) |
single nucleotide variant |
not provided [RCV000413547] |
ChrX:22247901 [GRCh38] ChrX:22266018 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
GRCh37/hg19 Xp22.33-11.23(chrX:60814-48317386)x1 |
copy number loss |
not provided [RCV000753273] |
ChrX:60814..48317386 [GRCh37] ChrX:Xp22.33-11.23 |
pathogenic |
NM_000444.6(PHEX):c.1483-1G>A |
single nucleotide variant |
not provided [RCV000413596] |
ChrX:22178272 [GRCh38] ChrX:22196389 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.883del (p.Ala295fs) |
deletion |
not provided [RCV000413674] |
ChrX:22096987 [GRCh38] ChrX:22115105 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2028_2032dup (p.Phe678fs) |
duplication |
not provided [RCV000413688] |
ChrX:22227565..22227566 [GRCh38] ChrX:22245682..22245683 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1715G>A (p.Gly572Asp) |
single nucleotide variant |
not provided [RCV000413745] |
ChrX:22219050 [GRCh38] ChrX:22237167 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2244_2245del (p.Trp749fs) |
microsatellite |
not provided [RCV000413761] |
ChrX:22247945..22247946 [GRCh38] ChrX:22266062..22266063 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2070+5G>C |
single nucleotide variant |
not provided [RCV000413865] |
ChrX:22227616 [GRCh38] ChrX:22245733 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|conflicting interpretations of pathogenicity |
NM_000444.6(PHEX):c.426C>A (p.Cys142Ter) |
single nucleotide variant |
not provided [RCV000414040] |
ChrX:22076464 [GRCh38] ChrX:22094582 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1727_1738del (p.Val576_His580delinsAsp) |
deletion |
not provided [RCV000414105] |
ChrX:22219062..22219073 [GRCh38] ChrX:22237179..22237190 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.503C>T (p.Pro168Leu) |
single nucleotide variant |
not provided [RCV000414149] |
ChrX:22077542 [GRCh38] ChrX:22095660 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.436+1G>A |
single nucleotide variant |
not provided [RCV000519029] |
ChrX:22076475 [GRCh38] ChrX:22094593 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2015T>C (p.Leu672Pro) |
single nucleotide variant |
not specified [RCV000414091] |
ChrX:22227556 [GRCh38] ChrX:22245673 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1046dup (p.Asp349fs) |
duplication |
not provided [RCV000414311] |
ChrX:22099117..22099118 [GRCh38] ChrX:22117235..22117236 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1586+2T>A |
single nucleotide variant |
not provided [RCV000414411] |
ChrX:22178378 [GRCh38] ChrX:22196495 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-154930047)x3 |
copy number gain |
See cases [RCV000449437] |
ChrX:168546..154930047 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x3 |
copy number gain |
See cases [RCV000449330] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-11.3(chrX:168546-43917011)x3 |
copy number gain |
See cases [RCV000449393] |
ChrX:168546..43917011 [GRCh37] ChrX:Xp22.33-11.3 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255792) |
copy number loss |
See cases [RCV000449461] |
ChrX:70297..155255792 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-55529093)x1 |
copy number loss |
See cases [RCV000446584] |
ChrX:168546..55529093 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:60701-155246225)x3 |
copy number gain |
See cases [RCV000446270] |
ChrX:60701..155246225 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-56684082)x1 |
copy number loss |
See cases [RCV000447092] |
ChrX:168546..56684082 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:2703632-155233731)x1 |
copy number loss |
See cases [RCV000446712] |
ChrX:2703632..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-11.22(chrX:168546-52573789)x1 |
copy number loss |
See cases [RCV000447470] |
ChrX:168546..52573789 [GRCh37] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:71267-155255792)x1 |
copy number loss |
See cases [RCV000446197] |
ChrX:71267..155255792 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:318707-155224707)x1 |
copy number loss |
See cases [RCV000446667] |
ChrX:318707..155224707 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22129362-22129540)x3 |
copy number gain |
See cases [RCV000447337] |
ChrX:22129362..22129540 [GRCh37] ChrX:Xp22.11 |
benign |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x4 |
copy number gain |
See cases [RCV000446932] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22166967-22219901)x2 |
copy number gain |
See cases [RCV000446165] |
ChrX:22166967..22219901 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155196888)x3 |
copy number gain |
See cases [RCV000446310] |
ChrX:168546..155196888 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155081533)x3 |
copy number gain |
See cases [RCV000447253] |
ChrX:168546..155081533 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1482+16A>C |
single nucleotide variant |
not provided [RCV001516202]|not specified [RCV000427359] |
ChrX:22168405 [GRCh38] ChrX:22186522 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1739A>G (p.His580Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000678304]|not provided [RCV000444535] |
ChrX:22219074 [GRCh38] ChrX:22237191 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1461T>C (p.His487=) |
single nucleotide variant |
not provided [RCV002059707]|not specified [RCV000424154] |
ChrX:22168368 [GRCh38] ChrX:22186485 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
GRCh37/hg19 Xp22.33-q28(chrX:168566-155233731)x1 |
copy number loss |
See cases [RCV000445720] |
ChrX:168566..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.565C>T (p.Gln189Ter) |
single nucleotide variant |
not provided [RCV000418710] |
ChrX:22077604 [GRCh38] ChrX:22095722 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1736G>A (p.Gly579Glu) |
single nucleotide variant |
not provided [RCV000419789] |
ChrX:22219071 [GRCh38] ChrX:22237188 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1768+5G>T |
single nucleotide variant |
not provided [RCV000419875] |
ChrX:22219108 [GRCh38] ChrX:22237225 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1900-1G>A |
single nucleotide variant |
not provided [RCV000424080] |
ChrX:22226442 [GRCh38] ChrX:22244559 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1700+1G>T |
single nucleotide variant |
not provided [RCV000424738] |
ChrX:22212959 [GRCh38] ChrX:22231076 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.849+1G>A |
single nucleotide variant |
not provided [RCV000425906] |
ChrX:22094100 [GRCh38] ChrX:22112218 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.505G>A (p.Val169Met) |
single nucleotide variant |
not provided [RCV001510910]|not specified [RCV000425649] |
ChrX:22077544 [GRCh38] ChrX:22095662 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1866T>C (p.Tyr622=) |
single nucleotide variant |
not specified [RCV000432626] |
ChrX:22221710 [GRCh38] ChrX:22239827 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.436+4A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV004545881]|not provided [RCV000436155] |
ChrX:22076478 [GRCh38] ChrX:22094596 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|benign|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1717G>C (p.Ala573Pro) |
single nucleotide variant |
not provided [RCV000429437] |
ChrX:22219052 [GRCh38] ChrX:22237169 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.185C>T (p.Ala62Val) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003133256]|not provided [RCV001063987]|not specified [RCV000433201] |
ChrX:22038535 [GRCh38] ChrX:22056653 [GRCh37] ChrX:Xp22.11 |
likely benign|uncertain significance |
NC_000023.10:g.(22115157_22117149)_(22117270_22129584)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505389] |
ChrX:22099031..22099152 [GRCh38] ChrX:22117149..22117270 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1986_1989dup (p.Arg664Ter) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505391]|not provided [RCV003558429] |
ChrX:22227526..22227527 [GRCh38] ChrX:22245643..22245644 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1768+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505392]|not provided [RCV003558428] |
ChrX:22219104 [GRCh38] ChrX:22237221 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22237221_22239729)_(22239861_22244559)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505393] |
ChrX:22221612..22221744 [GRCh38] ChrX:22239729..22239861 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22237221_22239729)_(22266070_?)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505396] |
ChrX:22221612..22247953 [GRCh38] ChrX:22239729..22266070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.732+5G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505397] |
ChrX:22090502 [GRCh38] ChrX:22108620 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.424del (p.Cys142fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505398] |
ChrX:22076462 [GRCh38] ChrX:22094580 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2078G>A (p.Cys693Tyr) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505399]|not provided [RCV001064981] |
ChrX:22245340 [GRCh38] ChrX:22263457 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1216T>C (p.Cys406Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505400]|not provided [RCV001060115] |
ChrX:22114500 [GRCh38] ChrX:22132618 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1885_1888dup (p.Ala630fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505402]|not provided [RCV001857230] |
ChrX:22221725..22221726 [GRCh38] ChrX:22239842..22239843 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1590G>C (p.Trp530Cys) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505403] |
ChrX:22190447 [GRCh38] ChrX:22208564 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.22130083_22232038dup |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505404] |
ChrX:22130083..22232038 [GRCh38] ChrX:22148200..22250155 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1754G>A (p.Gly585Glu) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505405] |
ChrX:22219089 [GRCh38] ChrX:22237206 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1483-2A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505407] |
ChrX:22178271 [GRCh38] ChrX:22196388 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1406C>A (p.Ala469Glu) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505408]|not provided [RCV001221993] |
ChrX:22168313 [GRCh38] ChrX:22186430 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.955AAG[1] (p.Lys320del) |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505409]|not provided [RCV001307375] |
ChrX:22099027..22099029 [GRCh38] ChrX:22117145..22117147 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.187+1G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505410] |
ChrX:22038538 [GRCh38] ChrX:22056656 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22186507_22196389)_(22231076_22237152)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505411] |
ChrX:22178272..22212959 [GRCh38] ChrX:22196389..22231076 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.707T>C (p.Leu236Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505412] |
ChrX:22090472 [GRCh38] ChrX:22108590 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.230G>T (p.Cys77Phe) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505416]|not provided [RCV001035982] |
ChrX:22047092 [GRCh38] ChrX:22065210 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1971C>G (p.Tyr657Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505417]|not provided [RCV001857231] |
ChrX:22227512 [GRCh38] ChrX:22245629 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.142C>T (p.Gln48Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505418] |
ChrX:22038492 [GRCh38] ChrX:22056610 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1718C>A (p.Ala573Asp) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505419]|not provided [RCV002524420] |
ChrX:22219053 [GRCh38] ChrX:22237170 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NC_000023.10:g.(22245729_22263449)_(22266070_?)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505420] |
ChrX:22245332..22247953 [GRCh38] ChrX:22263449..22266070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1572dup (p.Val525fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505422] |
ChrX:22178360..22178361 [GRCh38] ChrX:22196477..22196478 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22051124)_(22051242_22056586)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505423] |
ChrX:22033006..22033124 [GRCh38] ChrX:22051124..22051242 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22208620_22231047)_(22266070_?)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505424] |
ChrX:22212930..22247953 [GRCh38] ChrX:22231047..22266070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1649_1650del (p.Phe550fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505425] |
ChrX:22212906..22212907 [GRCh38] ChrX:22231023..22231024 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1910dup (p.Arg638fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505426] |
ChrX:22226451..22226452 [GRCh38] ChrX:22244568..22244569 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22065330_22094505)_(22095821_22108546)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505428] |
ChrX:22076387..22077703 [GRCh38] ChrX:22094505..22095821 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1952G>C (p.Arg651Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505429]|not provided [RCV001092573] |
ChrX:22226495 [GRCh38] ChrX:22244612 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.78dup (p.Val27fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505430] |
ChrX:22033080..22033081 [GRCh38] ChrX:22051198..22051199 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.546_549del (p.Arg183fs) |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505432] |
ChrX:22077582..22077585 [GRCh38] ChrX:22095700..22095703 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1568_1569insT (p.Lys523fs) |
insertion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505433] |
ChrX:22178358..22178359 [GRCh38] ChrX:22196475..22196476 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22094593_22095593)_(22095821_22108546)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505434] |
ChrX:22077475..22077703 [GRCh38] ChrX:22095593..22095821 [GRCh37] ChrX:Xp22.11 |
pathogenic |
Single allele |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505435] |
ChrX:22114640..22150788 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1404G>C (p.Lys468Asn) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505436]|not provided [RCV001377690] |
ChrX:22133624 [GRCh38] ChrX:22151741 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1297G>T (p.Glu433Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505437] |
ChrX:22114581 [GRCh38] ChrX:22132699 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2198G>C (p.Cys733Ser) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505438]|not provided [RCV001307376] |
ChrX:22247901 [GRCh38] ChrX:22266018 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NC_000023.10:g.(22239861_22244559)_(22266070_?)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505439] |
ChrX:22226442..22247953 [GRCh38] ChrX:22244559..22266070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1763A>G (p.Asn588Ser) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505440] |
ChrX:22219098 [GRCh38] ChrX:22237215 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2199_2217dup (p.Asn740fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505441] |
ChrX:22247899..22247900 [GRCh38] ChrX:22266016..22266017 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1134del (p.Ser379fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505443] |
ChrX:22111520 [GRCh38] ChrX:22129638 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.467T>C (p.Leu156Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505444] |
ChrX:22077506 [GRCh38] ChrX:22095624 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2044C>T (p.Gln682Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505447]|not provided [RCV001070383] |
ChrX:22227585 [GRCh38] ChrX:22245702 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22095821_22108546)_(22108616_22112100)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505448] |
ChrX:22090428..22090498 [GRCh38] ChrX:22108546..22108616 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1269del (p.Asp424fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505450] |
ChrX:22114553 [GRCh38] ChrX:22132671 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1775_1778dup (p.Tyr593Ter) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505451]|not provided [RCV002524418] |
ChrX:22221617..22221618 [GRCh38] ChrX:22239734..22239735 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22132705_22151639)_(22151742_22186428)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505452] |
ChrX:22151639..22151742 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2245T>C (p.Trp749Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505453]|not provided [RCV001210936] |
ChrX:22247948 [GRCh38] ChrX:22266065 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.436+6T>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505454] |
ChrX:22076480 [GRCh38] ChrX:22094598 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1103G>A (p.Trp368Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505455]|not provided [RCV001381240] |
ChrX:22111490 [GRCh38] ChrX:22129608 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.22256748_22370988del114241 |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505456] |
ChrX:22238631..22352871 [GRCh38] ChrX:22256748..22370988 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1966-9_1966-7del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505457] |
ChrX:22227498..22227500 [GRCh38] ChrX:22245615..22245617 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1523A>C (p.Gln508Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505458] |
ChrX:22178313 [GRCh38] ChrX:22196430 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.679C>A (p.Leu227Ile) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505459] |
ChrX:22090444 [GRCh38] ChrX:22108562 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.732+5G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505460]|not provided [RCV002524417] |
ChrX:22090502 [GRCh38] ChrX:22108620 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.591A>G (p.Gln197=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505462]|not provided [RCV001051990] |
ChrX:22077630 [GRCh38] ChrX:22095748 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.181G>T (p.Glu61Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505463] |
ChrX:22038531 [GRCh38] ChrX:22056649 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.119-3C>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505464] |
ChrX:22038466 [GRCh38] ChrX:22056584 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1700+2T>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505466]|Hypophosphatemic rickets [RCV001843308] |
ChrX:22212960 [GRCh38] ChrX:22231077 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2148-2A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505467] |
ChrX:22247849 [GRCh38] ChrX:22265966 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22117270_22129584)_(22132705_22151639)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505468] |
ChrX:22111466..22114587 [GRCh38] ChrX:22129584..22132705 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1936G>C (p.Asp646His) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505472]|not provided [RCV001207802] |
ChrX:22226479 [GRCh38] ChrX:22244596 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.253T>C (p.Cys85Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505475] |
ChrX:22047115 [GRCh38] ChrX:22065233 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2239_*2del (p.Arg747fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505476] |
ChrX:22247942..22247955 [GRCh38] ChrX:22266059..22266072 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1706T>C (p.Leu569Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505477]|not provided [RCV002524419] |
ChrX:22219041 [GRCh38] ChrX:22237158 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.621T>G (p.Tyr207Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505478] |
ChrX:22077660 [GRCh38] ChrX:22095778 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.933+1G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505479]|not provided [RCV001865642] |
ChrX:22097039 [GRCh38] ChrX:22115157 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2147+3A>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505480] |
ChrX:22245412 [GRCh38] ChrX:22263529 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1965+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505482]|not provided [RCV003558427] |
ChrX:22226509 [GRCh38] ChrX:22244626 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1586+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505483]|not provided [RCV001215404] |
ChrX:22178377 [GRCh38] ChrX:22196494 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.832G>T (p.Glu278Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505485] |
ChrX:22094082 [GRCh38] ChrX:22112200 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1079+5G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505486] |
ChrX:22099156 [GRCh38] ChrX:22117274 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1753G>A (p.Gly585Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505487]|not provided [RCV001340748] |
ChrX:22219088 [GRCh38] ChrX:22237205 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1022T>A (p.Val341Asp) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505488] |
ChrX:22099094 [GRCh38] ChrX:22117212 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1482+5G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505489]|not provided [RCV001044977] |
ChrX:22168394 [GRCh38] ChrX:22186511 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.934-3_934-1delinsTCA |
indel |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505490] |
ChrX:22099003..22099005 [GRCh38] ChrX:22117121..22117123 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1832_1833del (p.Lys610_Phe611insTer) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505491] |
ChrX:22221675..22221676 [GRCh38] ChrX:22239792..22239793 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.415T>A (p.Tyr139Asn) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505492] |
ChrX:22076453 [GRCh38] ChrX:22094571 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(22051242_22056586)_(22056656_22065167)del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505493] |
ChrX:22038468..22038538 [GRCh38] ChrX:22056586..22056656 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1303-1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505495] |
ChrX:22133522 [GRCh38] ChrX:22151639 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1044del (p.Asp349fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505496] |
ChrX:22099114 [GRCh38] ChrX:22117232 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1560del (p.Trp520fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505497] |
ChrX:22178349 [GRCh38] ChrX:22196466 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.704del (p.Tyr235fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505501] |
ChrX:22090469 [GRCh38] ChrX:22108587 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1735G>C (p.Gly579Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505502] |
ChrX:22219070 [GRCh38] ChrX:22237187 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1137_1138delinsAT (p.Ser379_Arg380delinsArgTrp) |
indel |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505503] |
ChrX:22111524..22111525 [GRCh38] ChrX:22129642..22129643 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1359A>C (p.Glu453Asp) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505504]|Inborn genetic diseases [RCV003243160]|not provided [RCV002056895]|not specified [RCV003403182] |
ChrX:22133579 [GRCh38] ChrX:22151696 [GRCh37] ChrX:Xp22.11 |
pathogenic|benign|uncertain significance |
NM_000444.6(PHEX):c.2093del (p.Pro698fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505505] |
ChrX:22245354 [GRCh38] ChrX:22263471 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.187+1del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505506]|not provided [RCV002527330] |
ChrX:22038536 [GRCh38] ChrX:22056654 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.436+19T>G |
single nucleotide variant |
not specified [RCV000437218] |
ChrX:22076493 [GRCh38] ChrX:22094611 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.58C>T (p.Arg20Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505445]|not provided [RCV000438600] |
ChrX:22033063 [GRCh38] ChrX:22051181 [GRCh37] ChrX:Xp22.11 |
pathogenic |
Single allele |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505401] |
ChrX:22228830..22247262 [GRCh38] ChrX:22246947..22265379 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1587-2145_1645+3342del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505442] |
ChrX:22188299..22193844 [GRCh38] ChrX:22206416..22211961 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1899+2113_1957del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505500] |
ChrX:22223856..22226500 [GRCh38] ChrX:22241973..22244617 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.617T>G (p.Leu206Trp) |
single nucleotide variant |
not provided [RCV000442393] |
ChrX:22077656 [GRCh38] ChrX:22095774 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x1 |
copy number loss |
See cases [RCV000448393] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255792)x4 |
copy number gain |
See cases [RCV000448034] |
ChrX:70297..155255792 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-11.1(chrX:168546-58140271)x1 |
copy number loss |
See cases [RCV000447773] |
ChrX:168546..58140271 [GRCh37] ChrX:Xp22.33-11.1 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:70297-155246585)x1 |
copy number loss |
See cases [RCV000448652] |
ChrX:70297..155246585 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22129362-22129540)x2 |
copy number gain |
See cases [RCV000448588] |
ChrX:22129362..22129540 [GRCh37] ChrX:Xp22.11 |
benign |
GRCh37/hg19 Xp22.12-22.11(chrX:21708594-22063592)x2 |
copy number gain |
See cases [RCV000512061] |
ChrX:21708594..22063592 [GRCh37] ChrX:Xp22.12-22.11 |
uncertain significance |
NM_000444.6(PHEX):c.758TGG[1] (p.Val254del) |
microsatellite |
not provided [RCV000480929] |
ChrX:22094008..22094010 [GRCh38] ChrX:22112126..22112128 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2147+2_2147+9del |
deletion |
not provided [RCV000481000] |
ChrX:22245409..22245416 [GRCh38] ChrX:22263526..22263533 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1173+1G>C |
single nucleotide variant |
not provided [RCV000481043] |
ChrX:22111561 [GRCh38] ChrX:22129679 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-55240087)x1 |
copy number loss |
See cases [RCV000512136] |
ChrX:168546..55240087 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.1147C>T (p.Gln383Ter) |
single nucleotide variant |
not provided [RCV000481323] |
ChrX:22111534 [GRCh38] ChrX:22129652 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1961_1963delinsCT (p.Phe654fs) |
indel |
not provided [RCV000481401] |
ChrX:22226504..22226506 [GRCh38] ChrX:22244621..22244623 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.419C>G (p.Ser140Ter) |
single nucleotide variant |
not provided [RCV000481726] |
ChrX:22076457 [GRCh38] ChrX:22094575 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1714G>A (p.Gly572Ser) |
single nucleotide variant |
not provided [RCV000481780] |
ChrX:22219049 [GRCh38] ChrX:22237166 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.152_162del (p.Gln51fs) |
deletion |
not provided [RCV000482163] |
ChrX:22038501..22038511 [GRCh38] ChrX:22056619..22056629 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1966_1969dup (p.Tyr657fs) |
duplication |
not provided [RCV000482207] |
ChrX:22227506..22227507 [GRCh38] ChrX:22245623..22245624 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1966-1G>C |
single nucleotide variant |
not provided [RCV000482606] |
ChrX:22227506 [GRCh38] ChrX:22245623 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1482+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250634]|not provided [RCV000482782] |
ChrX:22168390 [GRCh38] ChrX:22186507 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1174-2A>G |
single nucleotide variant |
not provided [RCV000482906] |
ChrX:22114456 [GRCh38] ChrX:22132574 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1660G>T (p.Glu554Ter) |
single nucleotide variant |
not provided [RCV000483049] |
ChrX:22212918 [GRCh38] ChrX:22231035 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1706dup (p.Ser570fs) |
duplication |
not provided [RCV000483750] |
ChrX:22219040..22219041 [GRCh38] ChrX:22237157..22237158 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1525del (p.Thr509fs) |
deletion |
not provided [RCV000483977] |
ChrX:22178313 [GRCh38] ChrX:22196430 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.151C>T (p.Gln51Ter) |
single nucleotide variant |
not provided [RCV000484045] |
ChrX:22038501 [GRCh38] ChrX:22056619 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.663+1_663+45del |
deletion |
not provided [RCV000484151] |
ChrX:22077701..22077745 [GRCh38] ChrX:22095819..22095863 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.914T>G (p.Leu305Arg) |
single nucleotide variant |
not provided [RCV000481234] |
ChrX:22097019 [GRCh38] ChrX:22115137 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1765_1768del (p.Asn589fs) |
deletion |
not provided [RCV000484521] |
ChrX:22219100..22219103 [GRCh38] ChrX:22237217..22237220 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.425G>C (p.Cys142Ser) |
single nucleotide variant |
not provided [RCV000481349] |
ChrX:22076463 [GRCh38] ChrX:22094581 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.2077T>C (p.Cys693Arg) |
single nucleotide variant |
not provided [RCV000478010] |
ChrX:22245339 [GRCh38] ChrX:22263456 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1658G>A (p.Gly553Glu) |
single nucleotide variant |
not provided [RCV000478030] |
ChrX:22212916 [GRCh38] ChrX:22231033 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2079C>G (p.Cys693Trp) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002248710]|not provided [RCV000478394] |
ChrX:22245341 [GRCh38] ChrX:22263458 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1593dup (p.Thr532fs) |
duplication |
not provided [RCV000478726] |
ChrX:22190447..22190448 [GRCh38] ChrX:22208564..22208565 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2118_2119del (p.Gln706fs) |
deletion |
not provided [RCV000479229] |
ChrX:22245379..22245380 [GRCh38] ChrX:22263496..22263497 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1202del (p.Pro401fs) |
deletion |
Hypophosphatemic rickets [RCV001843306]|not provided [RCV000486397] |
ChrX:22114485 [GRCh38] ChrX:22132603 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2061T>G (p.Ser687Arg) |
single nucleotide variant |
not provided [RCV000486427] |
ChrX:22227602 [GRCh38] ChrX:22245719 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2138del (p.Pro713fs) |
deletion |
not provided [RCV000486516] |
ChrX:22245396 [GRCh38] ChrX:22263513 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.505G>C (p.Val169Leu) |
single nucleotide variant |
not provided [RCV000486772] |
ChrX:22077544 [GRCh38] ChrX:22095662 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.850-2A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002283482]|not provided [RCV000486814] |
ChrX:22096953 [GRCh38] ChrX:22115071 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.2197T>C (p.Cys733Arg) |
single nucleotide variant |
not provided [RCV000479634] |
ChrX:22247900 [GRCh38] ChrX:22266017 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1586+1G>T |
single nucleotide variant |
not provided [RCV000486596] |
ChrX:22178377 [GRCh38] ChrX:22196494 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1768+2del |
deletion |
not provided [RCV000486710] |
ChrX:22219105 [GRCh38] ChrX:22237222 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.682_683del (p.Ser228fs) |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505406]|not provided [RCV000486799] |
ChrX:22090444..22090445 [GRCh38] ChrX:22108562..22108563 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.670C>T (p.Gln224Ter) |
single nucleotide variant |
not provided [RCV000486842] |
ChrX:22090435 [GRCh38] ChrX:22108553 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.499T>C (p.Trp167Arg) |
single nucleotide variant |
not provided [RCV000482803] |
ChrX:22077538 [GRCh38] ChrX:22095656 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1382C>A (p.Thr461Lys) |
single nucleotide variant |
not provided [RCV000487357] |
ChrX:22133602 [GRCh38] ChrX:22151719 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1719dup (p.Ile574fs) |
duplication |
not provided [RCV000479664] |
ChrX:22219053..22219054 [GRCh38] ChrX:22237170..22237171 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.332_334del (p.Val111del) |
deletion |
not provided [RCV000480501]|not specified [RCV002248708] |
ChrX:22047192..22047194 [GRCh38] ChrX:22065310..22065312 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.985dup (p.His329fs) |
duplication |
Hypophosphatemic rickets [RCV001843307]|not provided [RCV000480570] |
ChrX:22099052..22099053 [GRCh38] ChrX:22117170..22117171 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-11.1(chrX:168546-58527164)x1 |
copy number loss |
See cases [RCV000510437] |
ChrX:168546..58527164 [GRCh37] ChrX:Xp22.33-11.1 |
pathogenic |
GRCh37/hg19 Xp22.33-21.1(chrX:168546-37515849)x1 |
copy number loss |
See cases [RCV000510590] |
ChrX:168546..37515849 [GRCh37] ChrX:Xp22.33-21.1 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22196359-22196761)x1 |
copy number loss |
not provided [RCV000509466] |
ChrX:22196359..22196761 [GRCh37] ChrX:Xp22.11 |
not provided |
GRCh37/hg19 Xp22.33-q28(chrX:168547-151304063)x1 |
copy number loss |
See cases [RCV000510382] |
ChrX:168547..151304063 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.397C>T (p.Gln133Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001196900]|not provided [RCV000497462] |
ChrX:22076435 [GRCh38] ChrX:22094553 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-21.1(chrX:168546-35841052)x1 |
copy number loss |
See cases [RCV000510308] |
ChrX:168546..35841052 [GRCh37] ChrX:Xp22.33-21.1 |
pathogenic |
NM_000444.6(PHEX):c.961G>T (p.Val321Phe) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990517]|not provided [RCV000497756] |
ChrX:22099033 [GRCh38] ChrX:22117151 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-q23(chrX:168547-112474026)x1 |
copy number loss |
See cases [RCV000510419] |
ChrX:168547..112474026 [GRCh37] ChrX:Xp22.33-q23 |
pathogenic |
NM_000444.6(PHEX):c.251C>A (p.Ala84Asp) |
single nucleotide variant |
not provided [RCV000498627] |
ChrX:22047113 [GRCh38] ChrX:22065231 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-57504183)x1 |
copy number loss |
See cases [RCV000511615] |
ChrX:168546..57504183 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-57683964)x1 |
copy number loss |
See cases [RCV000512022] |
ChrX:168546..57683964 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh37/hg19 Xp22.33-21.2(chrX:168546-31085327)x1 |
copy number loss |
See cases [RCV000511350] |
ChrX:168546..31085327 [GRCh37] ChrX:Xp22.33-21.2 |
pathogenic |
GRCh37/hg19 Xp22.2-21.2(chrX:15290524-29747172)x2 |
copy number gain |
See cases [RCV000511443] |
ChrX:15290524..29747172 [GRCh37] ChrX:Xp22.2-21.2 |
likely pathogenic |
NM_000444.6(PHEX):c.1828_1832dup (p.Phe611fs) |
duplication |
not provided [RCV000494498] |
ChrX:22221671..22221672 [GRCh38] ChrX:22239788..22239789 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1723G>A (p.Gly575Arg) |
single nucleotide variant |
not provided [RCV000493080] |
ChrX:22219058 [GRCh38] ChrX:22237175 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|conflicting interpretations of pathogenicity |
NM_000444.6(PHEX):c.664-2A>C |
single nucleotide variant |
not provided [RCV000493119] |
ChrX:22090427 [GRCh38] ChrX:22108545 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168547-155233731) |
copy number gain |
See cases [RCV000512020] |
ChrX:168547..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1302+1G>T |
single nucleotide variant |
not provided [RCV000493272] |
ChrX:22114587 [GRCh38] ChrX:22132705 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
GRCh37/hg19 Xp22.12-22.11(chrX:21708594-22054641)x3 |
copy number gain |
See cases [RCV000511611] |
ChrX:21708594..22054641 [GRCh37] ChrX:Xp22.12-22.11 |
uncertain significance |
NM_000444.6(PHEX):c.118+1G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000505413]|not provided [RCV000493306] |
ChrX:22033124 [GRCh38] ChrX:22051242 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.682dup (p.Ser228fs) |
duplication |
not provided [RCV000493345] |
ChrX:22090446..22090447 [GRCh38] ChrX:22108564..22108565 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-54996659)x1 |
copy number loss |
See cases [RCV000510822] |
ChrX:168546..54996659 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.903C>T (p.Asn301=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001166522]|PHEX-related disorder [RCV003952971]|not provided [RCV000887315]|not specified [RCV000595511] |
ChrX:22097008 [GRCh38] ChrX:22115126 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
GRCh37/hg19 Xp22.11(chrX:22108547-22108570)x1 |
copy number loss |
not provided [RCV000585154] |
ChrX:22108547..22108570 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2040C>A (p.Asn680Lys) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250671]|Inborn genetic diseases [RCV000623585]|not provided [RCV001063543] |
ChrX:22227581 [GRCh38] ChrX:22245698 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2153A>G (p.Asn718Ser) |
single nucleotide variant |
Inborn genetic diseases [RCV003253145] |
ChrX:22247856 [GRCh38] ChrX:22265973 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1573G>A (p.Val525Ile) |
single nucleotide variant |
Inborn genetic diseases [RCV003295906]|not provided [RCV003669378] |
ChrX:22178363 [GRCh38] ChrX:22196480 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2071-5T>A |
single nucleotide variant |
not specified [RCV000605819] |
ChrX:22245328 [GRCh38] ChrX:22263445 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.598A>G (p.Asn200Asp) |
single nucleotide variant |
Inborn genetic diseases [RCV004025011]|not specified [RCV000613805] |
ChrX:22077637 [GRCh38] ChrX:22095755 [GRCh37] ChrX:Xp22.11 |
likely benign|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.2071-4C>G |
single nucleotide variant |
not specified [RCV000611852] |
ChrX:22245329 [GRCh38] ChrX:22263446 [GRCh37] ChrX:Xp22.11 |
likely benign |
GRCh37/hg19 Xp22.33-22.11(chrX:168546-24780527)x3 |
copy number gain |
See cases [RCV000512204] |
ChrX:168546..24780527 [GRCh37] ChrX:Xp22.33-22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q13.3(chrX:168546-74549686) |
copy number loss |
See cases [RCV000512142] |
ChrX:168546..74549686 [GRCh37] ChrX:Xp22.33-q13.3 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22108547-22108615)x0 |
copy number loss |
not provided [RCV000513234] |
ChrX:22108547..22108615 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:168564-57413442)x1 |
copy number loss |
See cases [RCV000512339] |
ChrX:168564..57413442 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.2171_2172del (p.Asn723_Phe724insTer) |
deletion |
not provided [RCV000657811] |
ChrX:22247873..22247874 [GRCh38] ChrX:22265990..22265991 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
GRCh37/hg19 Xp22.33-11.23(chrX:168546-46908284)x1 |
copy number loss |
not provided [RCV000684185] |
ChrX:168546..46908284 [GRCh37] ChrX:Xp22.33-11.23 |
pathogenic |
GRCh37/hg19 Xp22.31-q21.31(chrX:7841947-90815333)x1,2 |
copy number gain |
not provided [RCV000684261] |
ChrX:7841947..90815333 [GRCh37] ChrX:Xp22.31-q21.31 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22054493-22303438)x2 |
copy number gain |
not provided [RCV000684288] |
ChrX:22054493..22303438 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.11(chrX:22181596-22404721)x3 |
copy number gain |
not provided [RCV000684289] |
ChrX:22181596..22404721 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-11.3(chrX:168546-43248706)x1 |
copy number loss |
not provided [RCV000684184] |
ChrX:168546..43248706 [GRCh37] ChrX:Xp22.33-11.3 |
pathogenic |
GRCh37/hg19 Xp22.33-22.11(chrX:168546-23785738)x1 |
copy number loss |
not provided [RCV000684183] |
ChrX:168546..23785738 [GRCh37] ChrX:Xp22.33-22.11 |
pathogenic |
NM_000444.6(PHEX):c.15_16del (p.Gly6fs) |
deletion |
not provided [RCV000712532] |
ChrX:22033020..22033021 [GRCh38] ChrX:22051138..22051139 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.263G>A (p.Trp88Ter) |
single nucleotide variant |
not provided [RCV000712533] |
ChrX:22047125 [GRCh38] ChrX:22065243 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.663+8G>A |
single nucleotide variant |
not provided [RCV000712534] |
ChrX:22077710 [GRCh38] ChrX:22095828 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1033C>T (p.Gln345Ter) |
single nucleotide variant |
not provided [RCV000712531] |
ChrX:22099105 [GRCh38] ChrX:22117223 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.5(PHEX):c.(1965_2071)dup (p.Ala(1965_2071)Glyfs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000710032] |
|
uncertain significance |
GRCh37/hg19 Xp22.33-11.21(chrX:60814-55476165)x1 |
copy number loss |
not provided [RCV000753275] |
ChrX:60814..55476165 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
GRCh37/hg19 Xp22.33-11.22(chrX:60814-51821765)x1 |
copy number loss |
not provided [RCV000753274] |
ChrX:60814..51821765 [GRCh37] ChrX:Xp22.33-11.22 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:60814-155254881)x2 |
copy number gain |
not provided [RCV000753277] |
ChrX:60814..155254881 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:60262-155245765)x1 |
copy number loss |
not provided [RCV000753271] |
ChrX:60262..155245765 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:60262-155245765)x3 |
copy number gain |
not provided [RCV000753272] |
ChrX:60262..155245765 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:60814-155236712)x2 |
copy number gain |
not provided [RCV000753276] |
ChrX:60814..155236712 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
Single allele |
duplication |
Autism [RCV000754363] |
ChrX:10000..22474705 [GRCh38] ChrX:Xp22.33-22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:181779-155171702)x1 |
copy number loss |
not provided [RCV000753278] |
ChrX:181779..155171702 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
Single allele |
duplication |
Autism [RCV000754365] |
ChrX:1..156040895 [GRCh38] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1174-307T>C |
single nucleotide variant |
not provided [RCV001645791] |
ChrX:22114151 [GRCh38] ChrX:22132269 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.2070+251_2070+254dup |
duplication |
not provided [RCV001691450] |
ChrX:22227860..22227861 [GRCh38] ChrX:22245977..22245978 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1875T>G (p.Tyr625Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000761325]|not provided [RCV001049547] |
ChrX:22221719 [GRCh38] ChrX:22239836 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2140C>T (p.Gln714Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000761326] |
ChrX:22245402 [GRCh38] ChrX:22263519 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1474del (p.Leu492fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003314522] |
ChrX:22168380 [GRCh38] ChrX:22186497 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1805G>A (p.Trp602Ter) |
single nucleotide variant |
not provided [RCV000760755] |
ChrX:22221649 [GRCh38] ChrX:22239766 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.7_8dup (p.Glu4fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990502] |
ChrX:22033011..22033012 [GRCh38] ChrX:22051129..22051130 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.20_21del (p.Ser7fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990503] |
ChrX:22033025..22033026 [GRCh38] ChrX:22051143..22051144 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22266419-22929032)x0 |
copy number loss |
not provided [RCV001007274] |
ChrX:22266419..22929032 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.436+5G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990509] |
ChrX:22076479 [GRCh38] ChrX:22094597 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.540G>A (p.Trp180Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990510]|not provided [RCV001389692] |
ChrX:22077579 [GRCh38] ChrX:22095697 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.849_849+2del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990514] |
ChrX:22094099..22094101 [GRCh38] ChrX:22112217..22112219 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.934-1G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990516]|not provided [RCV001039862] |
ChrX:22099005 [GRCh38] ChrX:22117123 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1102T>C (p.Trp368Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990520] |
ChrX:22111489 [GRCh38] ChrX:22129607 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1157G>A (p.Trp386Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990521]|not provided [RCV001383914] |
ChrX:22111544 [GRCh38] ChrX:22129662 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1718C>T (p.Ala573Val) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990532]|not provided [RCV003688891] |
ChrX:22219053 [GRCh38] ChrX:22237170 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1809dup (p.Ser604fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990536] |
ChrX:22221651..22221652 [GRCh38] ChrX:22239768..22239769 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2147+2T>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990547] |
ChrX:22245411 [GRCh38] ChrX:22263528 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:539722-55509385)x1 |
copy number loss |
not provided [RCV001007224] |
ChrX:539722..55509385 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.2156G>C (p.Gly719Ala) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003448534] |
ChrX:22247859 [GRCh38] ChrX:22265976 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1645+187dup |
duplication |
not provided [RCV001586263] |
ChrX:22190681..22190682 [GRCh38] ChrX:22208798..22208799 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.367_370del (p.Ile123fs) |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002249607]|not provided [RCV000999351] |
ChrX:22076400..22076403 [GRCh38] ChrX:22094518..22094521 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1899+8C>T |
single nucleotide variant |
not provided [RCV000902369] |
ChrX:22221751 [GRCh38] ChrX:22239868 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1966-10C>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002505494]|not provided [RCV000983398] |
ChrX:22227497 [GRCh38] ChrX:22245614 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.750C>T (p.Tyr250=) |
single nucleotide variant |
not provided [RCV000925332] |
ChrX:22094000 [GRCh38] ChrX:22112118 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1965+10G>A |
single nucleotide variant |
not provided [RCV000944043] |
ChrX:22226518 [GRCh38] ChrX:22244635 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1768+4_1768+7del |
deletion |
not provided [RCV001038319] |
ChrX:22219104..22219107 [GRCh38] ChrX:22237221..22237224 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-21.1(chrX:168546-34753512)x1 |
copy number loss |
not provided [RCV001007559] |
ChrX:168546..34753512 [GRCh37] ChrX:Xp22.33-21.1 |
pathogenic |
NM_000444.6(PHEX):c.68del (p.Leu23fs) |
deletion |
not provided [RCV001040903] |
ChrX:22033073 [GRCh38] ChrX:22051191 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22033006)_(22038537_?)del |
deletion |
not provided [RCV001031107] |
ChrX:22051124..22056655 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1789G>T (p.Gly597Ter) |
single nucleotide variant |
not provided [RCV001045847] |
ChrX:22221633 [GRCh38] ChrX:22239750 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.766_767dup (p.Ala257fs) |
duplication |
not provided [RCV001068824] |
ChrX:22094015..22094016 [GRCh38] ChrX:22112133..22112134 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22168312)_(22274269_?)del |
deletion |
not provided [RCV001031575] |
ChrX:22186429..22292386 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1105A>T (p.Arg369Ter) |
single nucleotide variant |
PHEX-related disorder [RCV003405227]|not provided [RCV001041995] |
ChrX:22111492 [GRCh38] ChrX:22129610 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1116T>A (p.Tyr372Ter) |
single nucleotide variant |
not provided [RCV001046382] |
ChrX:22111503 [GRCh38] ChrX:22129621 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1700+1G>C |
single nucleotide variant |
not provided [RCV001046924] |
ChrX:22212959 [GRCh38] ChrX:22231076 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1844_1847dup (p.Lys616fs) |
duplication |
not provided [RCV001047114] |
ChrX:22221684..22221685 [GRCh38] ChrX:22239801..22239802 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22212904)_(22212958_?)del |
deletion |
not provided [RCV001031801] |
ChrX:22231021..22231075 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22178273)_(22190502_?)dup |
duplication |
not provided [RCV001031805] |
ChrX:22196390..22208619 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.10:g.(?_21990015)_(22292386_?)del |
deletion |
not provided [RCV001031815] |
ChrX:21990015..22292386 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22111467)_(22114586_?)del |
deletion |
not provided [RCV001031822] |
ChrX:22129585..22132704 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22076388)_(22077702_?)del |
deletion |
not provided [RCV001032758] |
ChrX:22094506..22095820 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22047050)_(22047211_?)del |
deletion |
not provided [RCV001032797] |
ChrX:22065168..22065329 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22076388)_(22076474_?)del |
deletion |
not provided [RCV001032799] |
ChrX:22094506..22094592 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22245333)_(22274269_?)del |
deletion |
not provided [RCV001032851] |
ChrX:22263450..22292386 [GRCh37] ChrX:Xp22.11 |
pathogenic |
Single allele |
insertion |
not provided [RCV001089811] |
ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22168312)_(22190502_?)dup |
duplication |
not provided [RCV001031925] |
ChrX:22186429..22208619 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.11:g.(?_22033006)_(22047211_?)del |
deletion |
not provided [RCV001031945] |
ChrX:22051124..22065329 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22219036)_(22221743_?)del |
deletion |
not provided [RCV001031965] |
ChrX:22237153..22239860 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22168312)_(22227611_?)dup |
duplication |
not provided [RCV001032977] |
ChrX:22186429..22245728 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1400_1404del (p.Glu467fs) |
deletion |
not provided [RCV001048497] |
ChrX:22133616..22133620 [GRCh38] ChrX:22151733..22151737 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1382C>G (p.Thr461Arg) |
single nucleotide variant |
not provided [RCV001066316] |
ChrX:22133602 [GRCh38] ChrX:22151719 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NC_000023.10:g.(?_22065168)_(22151741_?)dup |
duplication |
not provided [RCV001031386] |
ChrX:22065168..22151741 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.11:g.(?_22133523)_(22227611_?)dup |
duplication |
not provided [RCV001032113] |
ChrX:22151640..22245728 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.11:g.(?_22090429)_(22094099_?)del |
deletion |
not provided [RCV001032186] |
ChrX:22108547..22112217 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.11:g.(?_22178273)_(22178376_?)del |
deletion |
not provided [RCV001033091] |
ChrX:22196390..22196493 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2246G>C (p.Trp749Ser) |
single nucleotide variant |
not provided [RCV001049291] |
ChrX:22247949 [GRCh38] ChrX:22266066 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NC_000023.11:g.(?_22168312)_(22247953_?)del |
deletion |
not provided [RCV001033206] |
ChrX:22186429..22266070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
Single allele |
deletion |
Neurodevelopmental disorder [RCV000787440] |
ChrX:1..47140860 [GRCh37] ChrX:Xp22.33-11.23 |
pathogenic |
GRCh37/hg19 Xp22.33-11.22(chrX:60814-50519984)x1 |
copy number loss |
See cases [RCV000790583] |
ChrX:60814..50519984 [GRCh37] ChrX:Xp22.33-11.22 |
pathogenic |
NM_000444.6(PHEX):c.288A>G (p.Glu96=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002503063]|not provided [RCV000969760]|not specified [RCV001288265] |
ChrX:22047150 [GRCh38] ChrX:22065268 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.380G>A (p.Arg127Gln) |
single nucleotide variant |
not provided [RCV000891869] |
ChrX:22076418 [GRCh38] ChrX:22094536 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.996C>T (p.Asp332=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002487994]|not provided [RCV000918827] |
ChrX:22099068 [GRCh38] ChrX:22117186 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1859_1862dup (p.Tyr622fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246564]|not provided [RCV001944937] |
ChrX:22221701..22221702 [GRCh38] ChrX:22239818..22239819 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1088C>T (p.Ala363Val) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001029877] |
ChrX:22111475 [GRCh38] ChrX:22129593 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1768+5G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002281581]|not provided [RCV000992531] |
ChrX:22219108 [GRCh38] ChrX:22237225 [GRCh37] ChrX:Xp22.11 |
pathogenic|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.2071-9C>T |
single nucleotide variant |
not provided [RCV000914177] |
ChrX:22245324 [GRCh38] ChrX:22263441 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.631G>A (p.Asp211Asn) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001166518]|not provided [RCV000975449]|not specified [RCV003987752] |
ChrX:22077670 [GRCh38] ChrX:22095788 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.101del (p.Gly34fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990504] |
ChrX:22033104 [GRCh38] ChrX:22051222 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.254G>C (p.Cys85Ser) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990506]|not provided [RCV001869364] |
ChrX:22047116 [GRCh38] ChrX:22065234 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.422C>T (p.Ser141Phe) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990508]|not provided [RCV001858724] |
ChrX:22076460 [GRCh38] ChrX:22094578 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.559del (p.Leu187fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990511] |
ChrX:22077597 [GRCh38] ChrX:22095715 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.582del (p.Arg195fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990512] |
ChrX:22077619 [GRCh38] ChrX:22095737 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1217G>A (p.Cys406Tyr) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990524] |
ChrX:22114501 [GRCh38] ChrX:22132619 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1825G>T (p.Glu609Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990537] |
ChrX:22221669 [GRCh38] ChrX:22239786 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1862A>C (p.Gln621Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990539]|not provided [RCV003558625] |
ChrX:22221706 [GRCh38] ChrX:22239823 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.2005_2016del (p.Glu669_Leu672del) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990543]|not provided [RCV001342525] |
ChrX:22227543..22227554 [GRCh38] ChrX:22245660..22245671 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
GRCh37/hg19 Xp22.2-22.11(chrX:13962918-22148232)x2 |
copy number gain |
not provided [RCV000849766] |
ChrX:13962918..22148232 [GRCh37] ChrX:Xp22.2-22.11 |
pathogenic |
GRCh37/hg19 Xp22.2-22.11(chrX:13962918-22148232)x2 |
copy number gain |
not provided [RCV000849768] |
ChrX:13962918..22148232 [GRCh37] ChrX:Xp22.2-22.11 |
pathogenic |
NM_000444.6(PHEX):c.282del (p.Glu96fs) |
deletion |
not provided [RCV000992532] |
ChrX:22047143 [GRCh38] ChrX:22065261 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.827G>A (p.Arg276Lys) |
single nucleotide variant |
not provided [RCV000992535] |
ChrX:22094077 [GRCh38] ChrX:22112195 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.733-1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000850582]|not provided [RCV001858474] |
ChrX:22093982 [GRCh38] ChrX:22112100 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1483-7T>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001167038]|not provided [RCV002558644] |
ChrX:22178266 [GRCh38] ChrX:22196383 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.2068C>A (p.His690Asn) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001168749]|Inborn genetic diseases [RCV002557455]|not provided [RCV002558673] |
ChrX:22227609 [GRCh38] ChrX:22245726 [GRCh37] ChrX:Xp22.11 |
benign|likely benign|uncertain significance |
NM_000444.6(PHEX):c.1324del (p.Val442fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990525] |
ChrX:22133544 [GRCh38] ChrX:22151661 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.690C>T (p.Ala230=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001166520]|not provided [RCV002559596] |
ChrX:22090455 [GRCh38] ChrX:22108573 [GRCh37] ChrX:Xp22.11 |
benign|uncertain significance |
NM_000444.6(PHEX):c.1402A>T (p.Lys468Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990526]|not provided [RCV002549747] |
ChrX:22133622 [GRCh38] ChrX:22151739 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2125del (p.Ala709fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990545]|not provided [RCV001385223] |
ChrX:22245387 [GRCh38] ChrX:22263504 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2249A>G (p.Ter750Trp) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990550] |
ChrX:22247952 [GRCh38] ChrX:22266069 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.33-22.11(chrX:2190434-23795839)x3 |
copy number gain |
not provided [RCV000849574] |
ChrX:2190434..23795839 [GRCh37] ChrX:Xp22.33-22.11 |
pathogenic |
NM_000444.6(PHEX):c.1881G>A (p.Trp627Ter) |
single nucleotide variant |
not provided [RCV001058881] |
ChrX:22221725 [GRCh38] ChrX:22239842 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:21999106-22054641)x2 |
copy number gain |
not provided [RCV000846247] |
ChrX:21999106..22054641 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.-126C>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001168694] |
ChrX:22032880 [GRCh38] ChrX:22050998 [GRCh37] ChrX:Xp22.11 |
benign |
GRCh37/hg19 Xp22.11(chrX:21999106-22054641)x2 |
copy number gain |
not provided [RCV000846248] |
ChrX:21999106..22054641 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.11(chrX:21999106-22054641)x2 |
copy number gain |
not provided [RCV000846605] |
ChrX:21999106..22054641 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.12-21.1(chrX:20925922-35511818)x1 |
copy number loss |
not provided [RCV000847678] |
ChrX:20925922..35511818 [GRCh37] ChrX:Xp22.12-21.1 |
pathogenic |
GRCh37/hg19 Xp22.33-11.4(chrX:168546-38054739)x1 |
copy number loss |
not provided [RCV000845671] |
ChrX:168546..38054739 [GRCh37] ChrX:Xp22.33-11.4 |
pathogenic |
NM_000444.6(PHEX):c.437-3C>G |
single nucleotide variant |
not provided [RCV000992533] |
ChrX:22077473 [GRCh38] ChrX:22095591 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.481dup (p.Arg161fs) |
duplication |
not provided [RCV000992534] |
ChrX:22077519..22077520 [GRCh38] ChrX:22095637..22095638 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1586+5G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990529]|not provided [RCV001049087] |
ChrX:22178381 [GRCh38] ChrX:22196498 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1714G>T (p.Gly572Cys) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990531] |
ChrX:22219049 [GRCh38] ChrX:22237166 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.176G>C (p.Cys59Ser) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001029876] |
ChrX:22038526 [GRCh38] ChrX:22056644 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1483-1G>C |
single nucleotide variant |
not provided [RCV001246313] |
ChrX:22178272 [GRCh38] ChrX:22196389 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2148-3C>G |
single nucleotide variant |
not provided [RCV001056323] |
ChrX:22247848 [GRCh38] ChrX:22265965 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.2083del (p.Ser695fs) |
deletion |
not provided [RCV001056324] |
ChrX:22245344 [GRCh38] ChrX:22263461 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.416A>G (p.Tyr139Cys) |
single nucleotide variant |
not provided [RCV001211397] |
ChrX:22076454 [GRCh38] ChrX:22094572 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1586+1G>C |
single nucleotide variant |
not provided [RCV001058494] |
ChrX:22178377 [GRCh38] ChrX:22196494 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1700+264C>T |
single nucleotide variant |
not provided [RCV001544742] |
ChrX:22213222 [GRCh38] ChrX:22231339 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.185dup (p.Ala63fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990505] |
ChrX:22038534..22038535 [GRCh38] ChrX:22056652..22056653 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.349+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990507]|not provided [RCV003558624] |
ChrX:22047212 [GRCh38] ChrX:22065330 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.865G>T (p.Glu289Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990515] |
ChrX:22096970 [GRCh38] ChrX:22115088 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.985del (p.His329fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990518] |
ChrX:22099053 [GRCh38] ChrX:22117171 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1899+2T>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990541] |
ChrX:22221745 [GRCh38] ChrX:22239862 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2198G>T (p.Cys733Phe) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990548]|not provided [RCV001205648] |
ChrX:22247901 [GRCh38] ChrX:22266018 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.2011_2045del (p.Pro671fs) |
deletion |
not provided [RCV001212169] |
ChrX:22227552..22227586 [GRCh38] ChrX:22245669..22245703 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2000del (p.Gly667fs) |
deletion |
not provided [RCV001233187] |
ChrX:22227539 [GRCh38] ChrX:22245656 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1721T>A (p.Ile574Lys) |
single nucleotide variant |
not provided [RCV001222296] |
ChrX:22219056 [GRCh38] ChrX:22237173 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2148-1G>C |
single nucleotide variant |
not provided [RCV001221894] |
ChrX:22247850 [GRCh38] ChrX:22265967 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.750C>A (p.Tyr250Ter) |
single nucleotide variant |
not provided [RCV001226716] |
ChrX:22094000 [GRCh38] ChrX:22112118 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1387del (p.Arg463fs) |
deletion |
not provided [RCV001208404] |
ChrX:22133604 [GRCh38] ChrX:22151721 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1899+3G>C |
single nucleotide variant |
not provided [RCV001222462] |
ChrX:22221746 [GRCh38] ChrX:22239863 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.724del (p.Ala242fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003994232]|not provided [RCV001203225] |
ChrX:22090489 [GRCh38] ChrX:22108607 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1806del (p.Trp602fs) |
deletion |
not provided [RCV001233388] |
ChrX:22221649 [GRCh38] ChrX:22239766 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.978_979dup (p.Tyr327fs) |
microsatellite |
not provided [RCV001233507] |
ChrX:22099047..22099048 [GRCh38] ChrX:22117165..22117166 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1138dup (p.Arg380fs) |
duplication |
not provided [RCV001237791] |
ChrX:22111524..22111525 [GRCh38] ChrX:22129642..22129643 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1009G>T (p.Glu337Ter) |
single nucleotide variant |
not provided [RCV001234485] |
ChrX:22099081 [GRCh38] ChrX:22117199 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1173+1del |
deletion |
not provided [RCV001223001] |
ChrX:22111559 [GRCh38] ChrX:22129677 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.27_28insA (p.Glu10fs) |
insertion |
not provided [RCV001239145] |
ChrX:22033032..22033033 [GRCh38] ChrX:22051150..22051151 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.67_74del (p.Leu23fs) |
deletion |
not provided [RCV001203553] |
ChrX:22033072..22033079 [GRCh38] ChrX:22051190..22051197 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.201_202dup (p.Ser68fs) |
duplication |
not provided [RCV001239984] |
ChrX:22047062..22047063 [GRCh38] ChrX:22065180..22065181 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.934-2A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001810001]|not provided [RCV001235084] |
ChrX:22099004 [GRCh38] ChrX:22117122 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2164del (p.Ser722fs) |
deletion |
not provided [RCV001221409] |
ChrX:22247867 [GRCh38] ChrX:22265984 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1302+1G>C |
single nucleotide variant |
not provided [RCV001238174] |
ChrX:22114587 [GRCh38] ChrX:22132705 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2147G>C (p.Arg716Thr) |
single nucleotide variant |
not provided [RCV001223734] |
ChrX:22245409 [GRCh38] ChrX:22263526 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.2018T>G (p.Leu673Arg) |
single nucleotide variant |
not provided [RCV001223790] |
ChrX:22227559 [GRCh38] ChrX:22245676 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.766A>C (p.Thr256Pro) |
single nucleotide variant |
not provided [RCV001223791] |
ChrX:22094016 [GRCh38] ChrX:22112134 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2070+1G>T |
single nucleotide variant |
not provided [RCV001221285] |
ChrX:22227612 [GRCh38] ChrX:22245729 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.934-16_934-12delinsCTACCTAACTGAGAT |
indel |
not provided [RCV001209622] |
ChrX:22098990..22098994 [GRCh38] ChrX:22117108..22117112 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1482+1G>C |
single nucleotide variant |
not provided [RCV001210025] |
ChrX:22168390 [GRCh38] ChrX:22186507 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.83del (p.Gly28fs) |
deletion |
not provided [RCV001210205] |
ChrX:22033087 [GRCh38] ChrX:22051205 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.404C>A (p.Ala135Asp) |
single nucleotide variant |
not provided [RCV001223304] |
ChrX:22076442 [GRCh38] ChrX:22094560 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1853T>G (p.Met618Arg) |
single nucleotide variant |
not provided [RCV001226361] |
ChrX:22221697 [GRCh38] ChrX:22239814 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2189del (p.Ala730fs) |
deletion |
not provided [RCV001218409] |
ChrX:22247892 [GRCh38] ChrX:22266009 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2050TTC[1] (p.Phe685del) |
microsatellite |
not provided [RCV001235605] |
ChrX:22227589..22227591 [GRCh38] ChrX:22245706..22245708 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.241T>C (p.Phe81Leu) |
single nucleotide variant |
not provided [RCV001238520] |
ChrX:22047103 [GRCh38] ChrX:22065221 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.620_623del (p.Tyr207fs) |
deletion |
not provided [RCV001223335] |
ChrX:22077656..22077659 [GRCh38] ChrX:22095774..22095777 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.124del (p.Gln42fs) |
deletion |
not provided [RCV001223336] |
ChrX:22038474 [GRCh38] ChrX:22056592 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2192T>G (p.Phe731Cys) |
single nucleotide variant |
not provided [RCV001223337] |
ChrX:22247895 [GRCh38] ChrX:22266012 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.289_349+836delinsAAGATATGCCT |
indel |
not provided [RCV001239733] |
ChrX:22047151..22048047 [GRCh38] ChrX:22065269..22066165 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1757T>C (p.Phe586Ser) |
single nucleotide variant |
not provided [RCV001242137] |
ChrX:22219092 [GRCh38] ChrX:22237209 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1184_1185dup (p.Thr396fs) |
duplication |
not provided [RCV000992530] |
ChrX:22114465..22114466 [GRCh38] ChrX:22132583..22132584 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.230G>A (p.Cys77Tyr) |
single nucleotide variant |
not provided [RCV001222118] |
ChrX:22047092 [GRCh38] ChrX:22065210 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1482+3A>C |
single nucleotide variant |
not provided [RCV001238609] |
ChrX:22168392 [GRCh38] ChrX:22186509 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1958C>A (p.Ala653Asp) |
single nucleotide variant |
not provided [RCV001222246] |
ChrX:22226501 [GRCh38] ChrX:22244618 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.3G>T (p.Met1Ile) |
single nucleotide variant |
not provided [RCV001212779] |
ChrX:22033008 [GRCh38] ChrX:22051126 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.436+5G>A |
single nucleotide variant |
not provided [RCV001226195] |
ChrX:22076479 [GRCh38] ChrX:22094597 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1482+2T>G |
single nucleotide variant |
not provided [RCV001213016] |
ChrX:22168391 [GRCh38] ChrX:22186508 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1695T>A (p.Tyr565Ter) |
single nucleotide variant |
not provided [RCV001219160] |
ChrX:22212953 [GRCh38] ChrX:22231070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.118+2del |
deletion |
not provided [RCV001204575] |
ChrX:22033125 [GRCh38] ChrX:22051243 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.208_212del (p.Val70fs) |
microsatellite |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001271108]|not provided [RCV001219349] |
ChrX:22047063..22047067 [GRCh38] ChrX:22065181..22065185 [GRCh37] ChrX:Xp22.11 |
pathogenic|benign |
GRCh37/hg19 Xp22.11(chrX:22169781-22390857)x3 |
copy number gain |
not provided [RCV000847468] |
ChrX:22169781..22390857 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x1 |
copy number loss |
not provided [RCV000848828] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x4 |
copy number gain |
not provided [RCV000846039] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.593del (p.Tyr198fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990513] |
ChrX:22077632 [GRCh38] ChrX:22095750 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1215del (p.Lys405fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990523] |
ChrX:22114497 [GRCh38] ChrX:22132615 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1425del (p.Val476fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990527] |
ChrX:22168329 [GRCh38] ChrX:22186446 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1496_1497insTCA (p.Glu499delinsAspGln) |
insertion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990528] |
ChrX:22178285..22178286 [GRCh38] ChrX:22196402..22196403 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1646G>C (p.Arg549Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990530]|not provided [RCV002549748] |
ChrX:22212904 [GRCh38] ChrX:22231021 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1741G>T (p.Glu581Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990533] |
ChrX:22219076 [GRCh38] ChrX:22237193 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1750C>T (p.His584Tyr) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990534]|not provided [RCV001858725] |
ChrX:22219085 [GRCh38] ChrX:22237202 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1769-1G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990535] |
ChrX:22221612 [GRCh38] ChrX:22239729 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1951_1962dup (p.Glu652_Arg655dup) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990542] |
ChrX:22226493..22226494 [GRCh38] ChrX:22244610..22244611 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2078G>C (p.Cys693Ser) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990544]|not provided [RCV001858726] |
ChrX:22245340 [GRCh38] ChrX:22263457 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2236T>C (p.Cys746Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990549]|not provided [RCV003679024] |
ChrX:22247939 [GRCh38] ChrX:22266056 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.779del (p.Leu259_Leu260insTer) |
deletion |
not provided [RCV001008042] |
ChrX:22094026 [GRCh38] ChrX:22112144 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q11.1(chrX:168546-61877279)x1 |
copy number loss |
not provided [RCV000846273] |
ChrX:168546..61877279 [GRCh37] ChrX:Xp22.33-q11.1 |
pathogenic |
NM_000444.6(PHEX):c.653A>G (p.His218Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001166519]|PHEX-related disorder [RCV003945890] |
ChrX:22077692 [GRCh38] ChrX:22095810 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1586+14A>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001167039] |
ChrX:22178390 [GRCh38] ChrX:22196507 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-q28(chrX:200855-155240074) |
copy number gain |
Klinefelter syndrome [RCV003236730] |
ChrX:200855..155240074 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.433G>T (p.Glu145Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001580138] |
ChrX:22076471 [GRCh38] ChrX:22094589 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1587-266T>A |
single nucleotide variant |
not provided [RCV001577255] |
ChrX:22190178 [GRCh38] ChrX:22208295 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.2148-335C>T |
single nucleotide variant |
not provided [RCV001567126] |
ChrX:22247516 [GRCh38] ChrX:22265633 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1080-173G>A |
single nucleotide variant |
not provided [RCV001574804] |
ChrX:22111294 [GRCh38] ChrX:22129412 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1927_1928del (p.Asn643fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003317745] |
ChrX:22226468..22226469 [GRCh38] ChrX:22244585..22244586 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2018T>C (p.Leu673Pro) |
single nucleotide variant |
not provided [RCV003318228] |
ChrX:22227559 [GRCh38] ChrX:22245676 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.733-189G>A |
single nucleotide variant |
not provided [RCV001637665] |
ChrX:22093794 [GRCh38] ChrX:22111912 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1900-38G>T |
single nucleotide variant |
not provided [RCV001555363] |
ChrX:22226405 [GRCh38] ChrX:22244522 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1700+175dup |
duplication |
not provided [RCV001671282] |
ChrX:22213132..22213133 [GRCh38] ChrX:22231249..22231250 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.2070+317G>A |
single nucleotide variant |
not provided [RCV001716037] |
ChrX:22227928 [GRCh38] ChrX:22246045 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1900-211G>A |
single nucleotide variant |
not provided [RCV001587662] |
ChrX:22226232 [GRCh38] ChrX:22244349 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1966-36G>A |
single nucleotide variant |
not provided [RCV001544702] |
ChrX:22227471 [GRCh38] ChrX:22245588 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1900-20del |
deletion |
not provided [RCV001710410] |
ChrX:22226412 [GRCh38] ChrX:22244529 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1515C>T (p.Asn505=) |
single nucleotide variant |
not provided [RCV001676639] |
ChrX:22178305 [GRCh38] ChrX:22196422 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.437-208A>G |
single nucleotide variant |
not provided [RCV001724563] |
ChrX:22077268 [GRCh38] ChrX:22095386 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1899+91G>A |
single nucleotide variant |
not provided [RCV001694677] |
ChrX:22221834 [GRCh38] ChrX:22239951 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1645+302T>C |
single nucleotide variant |
not provided [RCV001559810] |
ChrX:22190804 [GRCh38] ChrX:22208921 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1645+169C>T |
single nucleotide variant |
not provided [RCV001686244] |
ChrX:22190671 [GRCh38] ChrX:22208788 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.440C>T (p.Ala147Val) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002502737]|not provided [RCV000911006] |
ChrX:22077479 [GRCh38] ChrX:22095597 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1383G>A (p.Thr461=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002495488]|not provided [RCV000908505] |
ChrX:22133603 [GRCh38] ChrX:22151720 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1437A>G (p.Pro479=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002479011]|not provided [RCV000886154] |
ChrX:22168344 [GRCh38] ChrX:22186461 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1008C>T (p.Ser336=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002502778]|not provided [RCV000916936] |
ChrX:22099080 [GRCh38] ChrX:22117198 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.441G>A (p.Ala147=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002505304]|not provided [RCV000901434] |
ChrX:22077480 [GRCh38] ChrX:22095598 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.399G>A (p.Gln133=) |
single nucleotide variant |
not provided [RCV000975952] |
ChrX:22076437 [GRCh38] ChrX:22094555 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.249C>T (p.Phe83=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002502845]|not provided [RCV000931297] |
ChrX:22047111 [GRCh38] ChrX:22065229 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.444T>C (p.Ile148=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001169464]|not provided [RCV000926532] |
ChrX:22077483 [GRCh38] ChrX:22095601 [GRCh37] ChrX:Xp22.11 |
likely benign|uncertain significance |
NM_000444.6(PHEX):c.922A>G (p.Met308Val) |
single nucleotide variant |
not provided [RCV000899880] |
ChrX:22097027 [GRCh38] ChrX:22115145 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1024C>T (p.Arg342Cys) |
single nucleotide variant |
not provided [RCV000933500] |
ChrX:22099096 [GRCh38] ChrX:22117214 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.2239del (p.Arg747fs) |
deletion |
not provided [RCV001214030] |
ChrX:22247941 [GRCh38] ChrX:22266058 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1768+1del |
deletion |
not provided [RCV001207116] |
ChrX:22219103 [GRCh38] ChrX:22237220 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.188-1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246226]|not provided [RCV001235599] |
ChrX:22047049 [GRCh38] ChrX:22065167 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1224del (p.Phe409fs) |
deletion |
not provided [RCV001242166] |
ChrX:22114508 [GRCh38] ChrX:22132626 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.307del (p.Val103fs) |
deletion |
not provided [RCV001244517] |
ChrX:22047166 [GRCh38] ChrX:22065284 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1702T>C (p.Ser568Pro) |
single nucleotide variant |
not provided [RCV001226570] |
ChrX:22219037 [GRCh38] ChrX:22237154 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1645+5G>A |
single nucleotide variant |
not provided [RCV001222996] |
ChrX:22190507 [GRCh38] ChrX:22208624 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2021del (p.Pro674fs) |
deletion |
not provided [RCV001247895] |
ChrX:22227561 [GRCh38] ChrX:22245678 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2149G>T (p.Val717Phe) |
single nucleotide variant |
not provided [RCV001219870] |
ChrX:22247852 [GRCh38] ChrX:22265969 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1313del (p.Leu438fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002225128]|not provided [RCV001219871] |
ChrX:22133532 [GRCh38] ChrX:22151649 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2140del (p.Gln714fs) |
deletion |
not provided [RCV001227397] |
ChrX:22245402 [GRCh38] ChrX:22263519 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1109T>G (p.Met370Arg) |
single nucleotide variant |
not provided [RCV001071444] |
ChrX:22111496 [GRCh38] ChrX:22129614 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.49A>T (p.Arg17Ter) |
single nucleotide variant |
not provided [RCV001240167] |
ChrX:22033054 [GRCh38] ChrX:22051172 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1146del (p.Gln383fs) |
deletion |
not provided [RCV001071446] |
ChrX:22111531 [GRCh38] ChrX:22129649 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.924_927dup (p.Pro310fs) |
duplication |
not provided [RCV001208906] |
ChrX:22097027..22097028 [GRCh38] ChrX:22115145..22115146 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.275_280delinsT (p.Asn92fs) |
indel |
not provided [RCV001243781] |
ChrX:22047137..22047142 [GRCh38] ChrX:22065255..22065260 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.981C>G (p.Tyr327Ter) |
single nucleotide variant |
not provided [RCV001227757] |
ChrX:22099053 [GRCh38] ChrX:22117171 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22212904)_(22274269_?)del |
deletion |
not provided [RCV001031164] |
ChrX:22231021..22292386 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.956dup (p.Lys320fs) |
duplication |
not provided [RCV001224378] |
ChrX:22099026..22099027 [GRCh38] ChrX:22117144..22117145 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2085del (p.Tyr696fs) |
deletion |
not provided [RCV001056325] |
ChrX:22245346 [GRCh38] ChrX:22263463 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NC_000023.11:g.(?_21977061)_(22077702_?)del |
deletion |
not provided [RCV001031635] |
ChrX:21995179..22095820 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.118+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003479295]|not provided [RCV001217335] |
ChrX:22033124 [GRCh38] ChrX:22051242 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.21delinsACTGG (p.Ser7fs) |
indel |
not provided [RCV001240990] |
ChrX:22033026 [GRCh38] ChrX:22051144 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.350-2A>G |
single nucleotide variant |
not provided [RCV001224836] |
ChrX:22076386 [GRCh38] ChrX:22094504 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.814A>T (p.Lys272Ter) |
single nucleotide variant |
not provided [RCV001225076] |
ChrX:22094064 [GRCh38] ChrX:22112182 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1779T>G (p.Tyr593Ter) |
single nucleotide variant |
not provided [RCV001225136] |
ChrX:22221623 [GRCh38] ChrX:22239740 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.134T>G (p.Leu45Ter) |
single nucleotide variant |
not provided [RCV001217999] |
ChrX:22038484 [GRCh38] ChrX:22056602 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2057T>C (p.Leu686Pro) |
single nucleotide variant |
not provided [RCV001218232] |
ChrX:22227598 [GRCh38] ChrX:22245715 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.849+3A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001166521]|PHEX-related disorder [RCV003910582]|not provided [RCV000891006] |
ChrX:22094102 [GRCh38] ChrX:22112220 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.2148-48T>G |
single nucleotide variant |
not provided [RCV001547744] |
ChrX:22247803 [GRCh38] ChrX:22265920 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1366T>G (p.Trp456Gly) |
single nucleotide variant |
not provided [RCV001557183] |
ChrX:22133586 [GRCh38] ChrX:22151703 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1328G>A (p.Arg443His) |
single nucleotide variant |
Inborn genetic diseases [RCV004651693]|not provided [RCV001577745] |
ChrX:22133548 [GRCh38] ChrX:22151665 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.842T>G (p.Ile281Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002470346] |
ChrX:22094092 [GRCh38] ChrX:22112210 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.11(chrX:22017666-22717072)x2 |
copy number gain |
not provided [RCV002473466] |
ChrX:22017666..22717072 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1701-341T>G |
single nucleotide variant |
not provided [RCV001637608] |
ChrX:22218695 [GRCh38] ChrX:22236812 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1208G>A (p.Trp403Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990522]|not provided [RCV001232657] |
ChrX:22114492 [GRCh38] ChrX:22132610 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2133T>G (p.Ser711Arg) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV000990546] |
ChrX:22245395 [GRCh38] ChrX:22263512 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.436+230G>C |
single nucleotide variant |
not provided [RCV001558725] |
ChrX:22076704 [GRCh38] ChrX:22094822 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1899+304T>C |
single nucleotide variant |
not provided [RCV001677707] |
ChrX:22222047 [GRCh38] ChrX:22240164 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.250G>C (p.Ala84Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003108250]|not provided [RCV003575034] |
ChrX:22047112 [GRCh38] ChrX:22065230 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.349+170A>G |
single nucleotide variant |
not provided [RCV001555705] |
ChrX:22047381 [GRCh38] ChrX:22065499 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.118+317T>C |
single nucleotide variant |
not provided [RCV001674257] |
ChrX:22033440 [GRCh38] ChrX:22051558 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1174-218T>G |
single nucleotide variant |
not provided [RCV001716565] |
ChrX:22114240 [GRCh38] ChrX:22132358 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1302+277G>A |
single nucleotide variant |
not provided [RCV001687528] |
ChrX:22114863 [GRCh38] ChrX:22132981 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1769-173T>C |
single nucleotide variant |
not provided [RCV001675464] |
ChrX:22221440 [GRCh38] ChrX:22239557 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1646-265A>G |
single nucleotide variant |
not provided [RCV001661059] |
ChrX:22212639 [GRCh38] ChrX:22230756 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1080-73C>T |
single nucleotide variant |
not provided [RCV001661068] |
ChrX:22111394 [GRCh38] ChrX:22129512 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.188-291T>G |
single nucleotide variant |
not provided [RCV001637167] |
ChrX:22046759 [GRCh38] ChrX:22064877 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1483-211G>T |
single nucleotide variant |
not provided [RCV001658660] |
ChrX:22178062 [GRCh38] ChrX:22196179 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.2148-302A>G |
single nucleotide variant |
not provided [RCV001641529] |
ChrX:22247549 [GRCh38] ChrX:22265666 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1482+271G>A |
single nucleotide variant |
not provided [RCV001635824] |
ChrX:22168660 [GRCh38] ChrX:22186777 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.135_136del (p.Leu47fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001029917] |
ChrX:22038485..22038486 [GRCh38] ChrX:22056603..22056604 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.849+128G>A |
single nucleotide variant |
not provided [RCV001710786] |
ChrX:22094227 [GRCh38] ChrX:22112345 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.118+286del |
deletion |
not provided [RCV001673994] |
ChrX:22033404 [GRCh38] ChrX:22051522 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.933+41A>G |
single nucleotide variant |
not provided [RCV001594727] |
ChrX:22097079 [GRCh38] ChrX:22115197 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1769-1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246431]|not provided [RCV001568175] |
ChrX:22221612 [GRCh38] ChrX:22239729 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1966-302C>T |
single nucleotide variant |
not provided [RCV001687854] |
ChrX:22227205 [GRCh38] ChrX:22245322 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.425G>T (p.Cys142Phe) |
single nucleotide variant |
not provided [RCV001066270] |
ChrX:22076463 [GRCh38] ChrX:22094581 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-22.11(chrX:537158-22883547)x1 |
copy number loss |
not provided [RCV001007223] |
ChrX:537158..22883547 [GRCh37] ChrX:Xp22.33-22.11 |
pathogenic |
Single allele |
insertion |
not provided [RCV001089845] |
ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.663+2T>C |
single nucleotide variant |
not provided [RCV001054305] |
ChrX:22077704 [GRCh38] ChrX:22095822 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.103_104del (p.Thr35fs) |
deletion |
not provided [RCV001054675] |
ChrX:22033107..22033108 [GRCh38] ChrX:22051225..22051226 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1919T>C (p.Leu640Pro) |
single nucleotide variant |
not provided [RCV001211281] |
ChrX:22226462 [GRCh38] ChrX:22244579 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.187+223G>A |
single nucleotide variant |
not provided [RCV001586374] |
ChrX:22038760 [GRCh38] ChrX:22056878 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.849+1049T>C |
single nucleotide variant |
not provided [RCV001680478] |
ChrX:22095148 [GRCh38] ChrX:22113266 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1738C>G (p.His580Asp) |
single nucleotide variant |
not provided [RCV001067886] |
ChrX:22219073 [GRCh38] ChrX:22237190 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2148-179A>T |
single nucleotide variant |
not provided [RCV001652052] |
ChrX:22247672 [GRCh38] ChrX:22265789 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1079+279C>T |
single nucleotide variant |
not provided [RCV001609914] |
ChrX:22099430 [GRCh38] ChrX:22117548 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1900-122_1900-119dup |
duplication |
not provided [RCV001679006] |
ChrX:22226318..22226319 [GRCh38] ChrX:22244435..22244436 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1900-232A>G |
single nucleotide variant |
not provided [RCV001669540] |
ChrX:22226211 [GRCh38] ChrX:22244328 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1483-312= |
single nucleotide variant |
not provided [RCV001641028] |
ChrX:22177961 [GRCh38] ChrX:22196078 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1586+287G>T |
single nucleotide variant |
not provided [RCV001613557] |
ChrX:22178663 [GRCh38] ChrX:22196780 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1768+173A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001029835] |
ChrX:22219276 [GRCh38] ChrX:22237393 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.850-169T>C |
single nucleotide variant |
not provided [RCV001582175] |
ChrX:22096786 [GRCh38] ChrX:22114904 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1645+110G>T |
single nucleotide variant |
not provided [RCV001682407] |
ChrX:22190612 [GRCh38] ChrX:22208729 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1174-286G>A |
single nucleotide variant |
not provided [RCV001614835] |
ChrX:22114172 [GRCh38] ChrX:22132290 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.437-2A>C |
single nucleotide variant |
not provided [RCV001059389] |
ChrX:22077474 [GRCh38] ChrX:22095592 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.2147+195T>C |
single nucleotide variant |
not provided [RCV001648728] |
ChrX:22245604 [GRCh38] ChrX:22263721 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.2077T>A (p.Cys693Ser) |
single nucleotide variant |
not provided [RCV001234409] |
ChrX:22245339 [GRCh38] ChrX:22263456 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2100del (p.Ala701fs) |
deletion |
not provided [RCV001206110] |
ChrX:22245362 [GRCh38] ChrX:22263479 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.942G>A (p.Trp314Ter) |
single nucleotide variant |
not provided [RCV001039306] |
ChrX:22099014 [GRCh38] ChrX:22117132 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1403A>C (p.Lys468Thr) |
single nucleotide variant |
not provided [RCV001215719] |
ChrX:22133623 [GRCh38] ChrX:22151740 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.30_36del (p.Thr11fs) |
deletion |
not provided [RCV001206146] |
ChrX:22033031..22033037 [GRCh38] ChrX:22051149..22051155 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2245T>A (p.Trp749Arg) |
single nucleotide variant |
not provided [RCV001067506] |
ChrX:22247948 [GRCh38] ChrX:22266065 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1328G>C (p.Arg443Pro) |
single nucleotide variant |
not provided [RCV001048810] |
ChrX:22133548 [GRCh38] ChrX:22151665 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1666C>T (p.Gln556Ter) |
single nucleotide variant |
not provided [RCV001205224] |
ChrX:22212924 [GRCh38] ChrX:22231041 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1104G>A (p.Trp368Ter) |
single nucleotide variant |
not provided [RCV001220284] |
ChrX:22111491 [GRCh38] ChrX:22129609 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1506C>G (p.Tyr502Ter) |
single nucleotide variant |
not provided [RCV001208647] |
ChrX:22178296 [GRCh38] ChrX:22196413 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1848del (p.Lys616fs) |
deletion |
not provided [RCV001205334] |
ChrX:22221689 [GRCh38] ChrX:22239806 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1535del (p.Tyr512fs) |
deletion |
not provided [RCV001212749] |
ChrX:22178325 [GRCh38] ChrX:22196442 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1627_1645+12del |
deletion |
not provided [RCV001202558] |
ChrX:22190482..22190512 [GRCh38] ChrX:22208599..22208629 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1973_1984dup (p.Arg658_Ile661dup) |
duplication |
not provided [RCV001248463] |
ChrX:22227512..22227513 [GRCh38] ChrX:22245629..22245630 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1237G>C (p.Ala413Pro) |
single nucleotide variant |
not provided [RCV001051822] |
ChrX:22114521 [GRCh38] ChrX:22132639 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.-126C>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001168693] |
ChrX:22032880 [GRCh38] ChrX:22050998 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.230G>C (p.Cys77Ser) |
single nucleotide variant |
not provided [RCV001205422] |
ChrX:22047092 [GRCh38] ChrX:22065210 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1173+5G>A |
single nucleotide variant |
not provided [RCV001216617] |
ChrX:22111565 [GRCh38] ChrX:22129683 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2237G>A (p.Cys746Tyr) |
single nucleotide variant |
not provided [RCV001219014] |
ChrX:22247940 [GRCh38] ChrX:22266057 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1399G>T (p.Glu467Ter) |
single nucleotide variant |
not provided [RCV001220425] |
ChrX:22133619 [GRCh38] ChrX:22151736 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2095G>T (p.Glu699Ter) |
single nucleotide variant |
not provided [RCV001217035] |
ChrX:22245357 [GRCh38] ChrX:22263474 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.436+2T>A |
single nucleotide variant |
not provided [RCV001230688] |
ChrX:22076476 [GRCh38] ChrX:22094594 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22033006)_(22033123_?)del |
deletion |
not provided [RCV001031270] |
ChrX:22051124..22051241 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22178273)_(22190502_?)del |
deletion |
not provided [RCV001031404] |
ChrX:22196390..22208619 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1751A>C (p.His584Pro) |
single nucleotide variant |
not provided [RCV001216031] |
ChrX:22219086 [GRCh38] ChrX:22237203 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.649G>T (p.Glu217Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003326144]|not provided [RCV001234648] |
ChrX:22077688 [GRCh38] ChrX:22095806 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.187+2T>A |
single nucleotide variant |
not provided [RCV001207959] |
ChrX:22038539 [GRCh38] ChrX:22056657 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NC_000023.11:g.(?_22111467)_(22111560_?)del |
deletion |
not provided [RCV001032210] |
ChrX:22129585..22129678 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.663G>A (p.Lys221=) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002249806]|not provided [RCV001215333] |
ChrX:22077702 [GRCh38] ChrX:22095820 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1405-3739_1459del |
deletion |
not provided [RCV001215045] |
ChrX:22164573..22168366 [GRCh38] ChrX:22182690..22186483 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.11:g.(?_22219036)_(22247953_?)del |
deletion |
not provided [RCV001032568] |
ChrX:22237153..22266070 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22114458)_(22114586_?)del |
deletion |
not provided [RCV001032708] |
ChrX:22132576..22132704 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22133523)_(22168389_?)dup |
duplication |
not provided [RCV001032729] |
ChrX:22151640..22186506 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1700+1G>A |
single nucleotide variant |
not provided [RCV001045953] |
ChrX:22212959 [GRCh38] ChrX:22231076 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.457dup (p.Ala153fs) |
duplication |
not provided [RCV001046084] |
ChrX:22077495..22077496 [GRCh38] ChrX:22095613..22095614 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1335del (p.Phe446fs) |
deletion |
not provided [RCV001230954] |
ChrX:22133554 [GRCh38] ChrX:22151671 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1806dup (p.Trp603fs) |
duplication |
not provided [RCV001046884] |
ChrX:22221648..22221649 [GRCh38] ChrX:22239765..22239766 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1520T>C (p.Leu507Pro) |
single nucleotide variant |
not provided [RCV001231229] |
ChrX:22178310 [GRCh38] ChrX:22196427 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.11:g.(?_22033006)_(22077702_?)del |
deletion |
not provided [RCV001033027] |
ChrX:22051124..22095820 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22190444)_(22190502_?)del |
deletion |
not provided [RCV001033112] |
ChrX:22208561..22208619 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22133523)_(22133624_?)del |
deletion |
not provided [RCV001033130] |
ChrX:22151640..22151741 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2250G>C (p.Ter750Tyr) |
single nucleotide variant |
not provided [RCV001243998] |
ChrX:22247953 [GRCh38] ChrX:22266070 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1529G>C (p.Arg510Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001030004]|not provided [RCV003558647] |
ChrX:22178319 [GRCh38] ChrX:22196436 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1701-1del |
deletion |
not provided [RCV001036667] |
ChrX:22219035 [GRCh38] ChrX:22237152 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.551dup (p.Phe185fs) |
duplication |
not provided [RCV001247625] |
ChrX:22077587..22077588 [GRCh38] ChrX:22095705..22095706 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1768+2T>G |
single nucleotide variant |
not provided [RCV001213206] |
ChrX:22219105 [GRCh38] ChrX:22237222 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2213C>T (p.Thr738Met) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001168750]|not provided [RCV002557456]|not specified [RCV004690001] |
ChrX:22247916 [GRCh38] ChrX:22266033 [GRCh37] ChrX:Xp22.11 |
benign|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.*58C>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001168752] |
ChrX:22248011 [GRCh38] ChrX:22266128 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1021del (p.Val341fs) |
deletion |
not provided [RCV001210790] |
ChrX:22099092 [GRCh38] ChrX:22117210 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.(?_22007157)_(22038537_?)del |
deletion |
not provided [RCV001031236] |
ChrX:22025275..22056655 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1942G>A (p.Gly648Arg) |
single nucleotide variant |
not provided [RCV001039487] |
ChrX:22226485 [GRCh38] ChrX:22244602 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NC_000023.11:g.(?_22190444)_(22227611_?)del |
deletion |
not provided [RCV001031762] |
ChrX:22208561..22245728 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.304G>A (p.Gly102Arg) |
single nucleotide variant |
not provided [RCV001039987] |
ChrX:22047166 [GRCh38] ChrX:22065284 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22094506)_(22292386_?)del |
deletion |
not provided [RCV001032145] |
ChrX:22094506..22292386 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1303-1G>A |
single nucleotide variant |
not provided [RCV001040276] |
ChrX:22133522 [GRCh38] ChrX:22151639 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1394C>A (p.Ala465Asp) |
single nucleotide variant |
not provided [RCV001040410] |
ChrX:22133614 [GRCh38] ChrX:22151731 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1368G>A (p.Trp456Ter) |
single nucleotide variant |
not provided [RCV001231526] |
ChrX:22133588 [GRCh38] ChrX:22151705 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.*305G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001169523] |
ChrX:22248258 [GRCh38] ChrX:22266375 [GRCh37] ChrX:Xp22.11 |
benign |
NC_000023.11:g.(?_22221613)_(22227611_?)dup |
duplication |
not provided [RCV001032540] |
ChrX:22239730..22245728 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.11:g.(?_22096955)_(22097038_?)del |
deletion |
not provided [RCV001032549] |
ChrX:22115073..22115156 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1402A>G (p.Lys468Glu) |
single nucleotide variant |
not provided [RCV001211920] |
ChrX:22133622 [GRCh38] ChrX:22151739 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1482+1G>T |
single nucleotide variant |
not provided [RCV001092571] |
ChrX:22168390 [GRCh38] ChrX:22186507 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1768+1G>T |
single nucleotide variant |
not provided [RCV001092572] |
ChrX:22219104 [GRCh38] ChrX:22237221 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.750del (p.Leu249_Tyr250insTer) |
deletion |
not provided [RCV001066122] |
ChrX:22094000 [GRCh38] ChrX:22112118 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22094506)_(22196493_?)dup |
duplication |
not provided [RCV001033323] |
ChrX:22094506..22196493 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.204del (p.Ser68fs) |
deletion |
not provided [RCV001215550] |
ChrX:22047066 [GRCh38] ChrX:22065184 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.645_652del (p.Asn216fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001254910] |
ChrX:22077683..22077690 [GRCh38] ChrX:22095801..22095808 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
GRCh37/hg19 Xp22.33-11.21(chrX:219609-55466476)x1 |
copy number loss |
See cases [RCV001263061] |
ChrX:219609..55466476 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.2071-2A>G |
single nucleotide variant |
not provided [RCV001268141] |
ChrX:22245331 [GRCh38] ChrX:22263448 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.22213388_22345581del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001271109] |
ChrX:22213388..22345581 [GRCh38] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:1-155270560) |
copy number loss |
Turner syndrome [RCV002280668] |
ChrX:1..155270560 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
GRCh37/hg19 Xp22.11(chrX:22155363-22824441)x2 |
copy number gain |
not provided [RCV001259447] |
ChrX:22155363..22824441 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.11(chrX:22222044-22975163)x2 |
copy number gain |
not provided [RCV001259449] |
ChrX:22222044..22975163 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.11(chrX:22222044-22975163)x3 |
copy number gain |
not provided [RCV001259450] |
ChrX:22222044..22975163 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-q28(chrX:1-155270560) |
copy number gain |
46,XX sex reversal 1 [RCV002280665]|Hypotonia [RCV002280667]|Trisomy X syndrome [RCV002280666] |
ChrX:1..155270560 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1850G>T (p.Cys617Phe) |
single nucleotide variant |
not provided [RCV001341764] |
ChrX:22221694 [GRCh38] ChrX:22239811 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NC_000023.11:g.22243338_22690207del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001312195] |
ChrX:22243338..22690207 [GRCh38] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1519C>G (p.Leu507Val) |
single nucleotide variant |
not provided [RCV001313944] |
ChrX:22178309 [GRCh38] ChrX:22196426 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.732+4_732+5insCA |
insertion |
not provided [RCV001301525] |
ChrX:22090500..22090501 [GRCh38] ChrX:22108618..22108619 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1091_1099dup (p.Leu366_Val367insAspTyrLeu) |
duplication |
not provided [RCV001288264] |
ChrX:22111477..22111478 [GRCh38] ChrX:22129595..22129596 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-11.21(chrX:168546-56457794)x1 |
copy number loss |
not provided [RCV001281358] |
ChrX:168546..56457794 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.1304T>G (p.Met435Arg) |
single nucleotide variant |
not provided [RCV001299423] |
ChrX:22133524 [GRCh38] ChrX:22151641 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2065G>C (p.Ala689Pro) |
single nucleotide variant |
not provided [RCV001317702] |
ChrX:22227606 [GRCh38] ChrX:22245723 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1966-1G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001331239] |
ChrX:22227506 [GRCh38] ChrX:22245623 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic|benign |
NM_000444.6(PHEX):c.1133T>C (p.Leu378Pro) |
single nucleotide variant |
not provided [RCV001342791] |
ChrX:22111520 [GRCh38] ChrX:22129638 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1302+4_1302+10del |
deletion |
not provided [RCV001342981] |
ChrX:22114585..22114591 [GRCh38] ChrX:22132703..22132709 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1645+2T>G |
single nucleotide variant |
not provided [RCV001382443] |
ChrX:22190504 [GRCh38] ChrX:22208621 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2116C>T (p.Gln706Ter) |
single nucleotide variant |
not provided [RCV001382480] |
ChrX:22245378 [GRCh38] ChrX:22263495 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1602G>A (p.Pro534=) |
single nucleotide variant |
not provided [RCV004598727] |
ChrX:22190459 [GRCh38] ChrX:22208576 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1282C>T (p.Gln428Ter) |
single nucleotide variant |
not provided [RCV001383221] |
ChrX:22114566 [GRCh38] ChrX:22132684 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2179T>C (p.Phe727Leu) |
single nucleotide variant |
not provided [RCV001360181] |
ChrX:22247882 [GRCh38] ChrX:22265999 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1812del (p.Thr605fs) |
deletion |
not provided [RCV001382604] |
ChrX:22221656 [GRCh38] ChrX:22239773 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.226C>G (p.Pro76Ala) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002499710]|not provided [RCV001355226] |
ChrX:22047088 [GRCh38] ChrX:22065206 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.64G>T (p.Ala22Ser) |
single nucleotide variant |
not provided [RCV001303324] |
ChrX:22033069 [GRCh38] ChrX:22051187 [GRCh37] ChrX:Xp22.11 |
likely benign|uncertain significance |
NM_000444.6(PHEX):c.1017GGT[1] (p.Val341del) |
microsatellite |
not provided [RCV001327259] |
ChrX:22099087..22099089 [GRCh38] ChrX:22117205..22117207 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1933G>A (p.Ala645Thr) |
single nucleotide variant |
not provided [RCV001370177] |
ChrX:22226476 [GRCh38] ChrX:22244593 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.479T>C (p.Leu160Pro) |
single nucleotide variant |
not provided [RCV001374068] |
ChrX:22077518 [GRCh38] ChrX:22095636 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.482G>C (p.Arg161Pro) |
single nucleotide variant |
not provided [RCV001342790] |
ChrX:22077521 [GRCh38] ChrX:22095639 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.1876T>C (p.Tyr626His) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002476599]|not provided [RCV001347709] |
ChrX:22221720 [GRCh38] ChrX:22239837 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.349+2dup |
duplication |
not provided [RCV001295805] |
ChrX:22047212..22047213 [GRCh38] ChrX:22065330..22065331 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
GRCh37/hg19 Xp22.33-q28(chrX:60000-155234966)x1 |
copy number loss |
not provided [RCV001537933] |
ChrX:60000..155234966 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NC_000023.10:g.(?_22151640)_(22151741_?)dup |
duplication |
not provided [RCV001299578] |
ChrX:22151640..22151741 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NC_000023.10:g.(?_22263430)_(22266301_?)dup |
duplication |
not provided [RCV001299579] |
ChrX:22263430..22266301 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1960T>A (p.Phe654Ile) |
single nucleotide variant |
not provided [RCV001340539] |
ChrX:22226503 [GRCh38] ChrX:22244620 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1412_1417del (p.Ala471_Leu473delinsVal) |
deletion |
not provided [RCV001338694] |
ChrX:22168319..22168324 [GRCh38] ChrX:22186436..22186441 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NM_000444.6(PHEX):c.819_845del (p.Val274_Ala282del) |
deletion |
not provided [RCV001367408] |
ChrX:22094068..22094094 [GRCh38] ChrX:22112186..22112212 [GRCh37] ChrX:Xp22.11 |
pathogenic|uncertain significance |
NC_000023.10:g.(?_22151640)_(22186506_?)dup |
duplication |
not provided [RCV001327820] |
ChrX:22151640..22186506 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.10:g.(?_22056587)_(22292386_?)dup |
duplication |
not provided [RCV001372126] |
ChrX:22056587..22292386 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1936G>T (p.Asp646Tyr) |
single nucleotide variant |
not provided [RCV001337414] |
ChrX:22226479 [GRCh38] ChrX:22244596 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2T>C (p.Met1Thr) |
single nucleotide variant |
not provided [RCV001387066] |
ChrX:22033007 [GRCh38] ChrX:22051125 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22231021)_(22245728_?)del |
deletion |
not provided [RCV001389403] |
ChrX:22231021..22245728 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1309G>T (p.Glu437Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246373]|not provided [RCV001387629] |
ChrX:22133529 [GRCh38] ChrX:22151646 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.552del (p.Lys184fs) |
deletion |
not provided [RCV001380667] |
ChrX:22077591 [GRCh38] ChrX:22095709 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.898del (p.Lys299_Met300insTer) |
deletion |
not provided [RCV001385728] |
ChrX:22097000 [GRCh38] ChrX:22115118 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1398dup (p.Glu467fs) |
duplication |
not provided [RCV001381326] |
ChrX:22133615..22133616 [GRCh38] ChrX:22151732..22151733 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.616_617del (p.Leu206fs) |
deletion |
not provided [RCV001390689] |
ChrX:22077654..22077655 [GRCh38] ChrX:22095772..22095773 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.750C>G (p.Tyr250Ter) |
single nucleotide variant |
not provided [RCV001388467] |
ChrX:22094000 [GRCh38] ChrX:22112118 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1818_1821dup (p.Glu608fs) |
duplication |
not provided [RCV001386509] |
ChrX:22221660..22221661 [GRCh38] ChrX:22239777..22239778 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.891C>G (p.Tyr297Ter) |
single nucleotide variant |
not provided [RCV001388638] |
ChrX:22096996 [GRCh38] ChrX:22115114 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2221A>T (p.Arg741Ter) |
single nucleotide variant |
not provided [RCV001391022] |
ChrX:22247924 [GRCh38] ChrX:22266041 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.437-1G>C |
single nucleotide variant |
not provided [RCV001379816] |
ChrX:22077475 [GRCh38] ChrX:22095593 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.436+3G>C |
single nucleotide variant |
not provided [RCV001378984] |
ChrX:22076477 [GRCh38] ChrX:22094595 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1600C>A (p.Pro534Thr) |
single nucleotide variant |
not provided [RCV001378986] |
ChrX:22190457 [GRCh38] ChrX:22208574 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.593dup (p.Tyr198Ter) |
duplication |
not provided [RCV001387979] |
ChrX:22077631..22077632 [GRCh38] ChrX:22095749..22095750 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.72C>T (p.Val24=) |
single nucleotide variant |
not provided [RCV001440900] |
ChrX:22033077 [GRCh38] ChrX:22051195 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.733-2A>C |
single nucleotide variant |
not provided [RCV001377793] |
ChrX:22093981 [GRCh38] ChrX:22112099 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.887_888insA (p.Met296fs) |
insertion |
not provided [RCV001380305] |
ChrX:22096992..22096993 [GRCh38] ChrX:22115110..22115111 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.188-1G>A |
single nucleotide variant |
not provided [RCV001388152] |
ChrX:22047049 [GRCh38] ChrX:22065167 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.717_721del (p.Ser239fs) |
deletion |
not provided [RCV001389359] |
ChrX:22090478..22090482 [GRCh38] ChrX:22108596..22108600 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1982_1986dup (p.Asp663Ter) |
duplication |
not provided [RCV001380330] |
ChrX:22227522..22227523 [GRCh38] ChrX:22245639..22245640 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.177C>A (p.Cys59Ter) |
single nucleotide variant |
not provided [RCV001387387] |
ChrX:22038527 [GRCh38] ChrX:22056645 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1079+2T>G |
single nucleotide variant |
not provided [RCV001381239] |
ChrX:22099153 [GRCh38] ChrX:22117271 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.587del (p.Gly196fs) |
deletion |
not provided [RCV001381263] |
ChrX:22077625 [GRCh38] ChrX:22095743 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1847_1848del (p.Lys616fs) |
deletion |
not provided [RCV001389486] |
ChrX:22221689..22221690 [GRCh38] ChrX:22239806..22239807 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2061_2070+7del |
deletion |
not provided [RCV001379357] |
ChrX:22227602..22227618 [GRCh38] ChrX:22245719..22245735 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22065168)_(22132704_?)dup |
duplication |
not provided [RCV001389606] |
ChrX:22065168..22132704 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22265992)_22266306del |
deletion |
not provided [RCV001389607] |
|
pathogenic |
NC_000023.10:g.(?_22117199)_22177147del |
deletion |
not provided [RCV001389608] |
|
pathogenic |
NM_000444.6(PHEX):c.1531A>T (p.Lys511Ter) |
single nucleotide variant |
not provided [RCV001384980] |
ChrX:22178321 [GRCh38] ChrX:22196438 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2067_2068dup (p.His690fs) |
duplication |
not provided [RCV001386409] |
ChrX:22227606..22227607 [GRCh38] ChrX:22245723..22245724 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1446_1452del (p.Ile482fs) |
deletion |
not provided [RCV001386410] |
ChrX:22168351..22168357 [GRCh38] ChrX:22186468..22186474 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.468dup (p.Leu157fs) |
duplication |
not provided [RCV001380895] |
ChrX:22077506..22077507 [GRCh38] ChrX:22095624..22095625 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2044del (p.Gln682fs) |
deletion |
not provided [RCV001388543] |
ChrX:22227584 [GRCh38] ChrX:22245701 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22263450)_(22263526_?)del |
deletion |
not provided [RCV001379302] |
ChrX:22263450..22263526 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22108537)_(22108625_?)del |
deletion |
not provided [RCV001379303] |
ChrX:22108537..22108625 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22112101)_(22112217_?)del |
deletion |
not provided [RCV001379304] |
ChrX:22112101..22112217 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2012del (p.Pro671fs) |
deletion |
not provided [RCV001383658] |
ChrX:22227552 [GRCh38] ChrX:22245669 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1707_1710dup (p.Tyr571fs) |
duplication |
not provided [RCV001381408] |
ChrX:22219040..22219041 [GRCh38] ChrX:22237157..22237158 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1303-10T>A |
single nucleotide variant |
not provided [RCV001423969] |
ChrX:22133513 [GRCh38] ChrX:22151630 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.994del (p.Asp332fs) |
deletion |
not provided [RCV001386728] |
ChrX:22099066 [GRCh38] ChrX:22117184 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.361A>T (p.Lys121Ter) |
single nucleotide variant |
not provided [RCV001387595] |
ChrX:22076399 [GRCh38] ChrX:22094517 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.349+2T>C |
single nucleotide variant |
not provided [RCV001383765] |
ChrX:22047213 [GRCh38] ChrX:22065331 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.455dup (p.Asp152fs) |
duplication |
not provided [RCV001388481] |
ChrX:22077493..22077494 [GRCh38] ChrX:22095611..22095612 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22237133)_(22239880_?)del |
deletion |
not provided [RCV001381803] |
ChrX:22237133..22239880 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22237153)_(22245728_?)del |
deletion |
not provided [RCV001381804] |
ChrX:22237153..22245728 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22263430)_(22266301_?)del |
deletion |
not provided [RCV001381805] |
ChrX:22263430..22266301 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22094486)_(22151761_?)del |
deletion |
not provided [RCV001381806] |
ChrX:22094486..22151761 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22094506)_(22108615_?)del |
deletion |
not provided [RCV001381807] |
ChrX:22094506..22108615 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1543_1544del (p.Gln515fs) |
microsatellite |
not provided [RCV001381581] |
ChrX:22178331..22178332 [GRCh38] ChrX:22196448..22196449 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2058_2061dup (p.Tyr688fs) |
duplication |
not provided [RCV001388897] |
ChrX:22227597..22227598 [GRCh38] ChrX:22245714..22245715 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22186468)_22186740del |
deletion |
not provided [RCV001378771] |
|
likely pathogenic |
NC_000023.10:g.(?_22244540)_(22244645_?)del |
deletion |
not provided [RCV001384396] |
ChrX:22244540..22244645 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_21958943)_(22208619_?)del |
deletion |
not provided [RCV001384399] |
ChrX:21958943..22208619 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2030_2031dup (p.Phe678fs) |
microsatellite |
not provided [RCV001382091] |
ChrX:22227568..22227569 [GRCh38] ChrX:22245685..22245686 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1137_1149del (p.Arg380fs) |
deletion |
not provided [RCV001382092] |
ChrX:22111522..22111534 [GRCh38] ChrX:22129640..22129652 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2165_2184dup (p.Lys729fs) |
duplication |
not provided [RCV001382100] |
ChrX:22247867..22247868 [GRCh38] ChrX:22265984..22265985 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.933+286G>A |
single nucleotide variant |
not provided [RCV001619373] |
ChrX:22097324 [GRCh38] ChrX:22115442 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.2009A>T (p.Glu670Val) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001682633] |
ChrX:22227550 [GRCh38] ChrX:22245667 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2070+325C>T |
single nucleotide variant |
not provided [RCV001670697] |
ChrX:22227936 [GRCh38] ChrX:22246053 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1900-121_1900-120insATGA |
insertion |
not provided [RCV001709373] |
ChrX:22226321..22226322 [GRCh38] ChrX:22244438..22244439 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1645+212A>G |
single nucleotide variant |
not provided [RCV001654843] |
ChrX:22190714 [GRCh38] ChrX:22208831 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.2147+170A>G |
single nucleotide variant |
not provided [RCV001592652] |
ChrX:22245579 [GRCh38] ChrX:22263696 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.188-47C>T |
single nucleotide variant |
not provided [RCV001686414] |
ChrX:22047003 [GRCh38] ChrX:22065121 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1645+174T>G |
single nucleotide variant |
not provided [RCV001650129] |
ChrX:22190676 [GRCh38] ChrX:22208793 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1701-207A>G |
single nucleotide variant |
not provided [RCV001693687] |
ChrX:22218829 [GRCh38] ChrX:22236946 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.664-124G>C |
single nucleotide variant |
not provided [RCV001665922] |
ChrX:22090305 [GRCh38] ChrX:22108423 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1079+213T>C |
single nucleotide variant |
not provided [RCV001665968] |
ChrX:22099364 [GRCh38] ChrX:22117482 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.934-217A>C |
single nucleotide variant |
not provided [RCV001688064] |
ChrX:22098789 [GRCh38] ChrX:22116907 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1334C>A (p.Ala445Asp) |
single nucleotide variant |
not provided [RCV001379571] |
ChrX:22133554 [GRCh38] ChrX:22151671 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1390_1404+1del |
deletion |
not provided [RCV001387826] |
ChrX:22133603..22133618 [GRCh38] ChrX:22151720..22151735 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.779T>G (p.Leu260Ter) |
single nucleotide variant |
not provided [RCV001381087] |
ChrX:22094029 [GRCh38] ChrX:22112147 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2151C>G (p.Val717=) |
single nucleotide variant |
not provided [RCV001518538] |
ChrX:22247854 [GRCh38] ChrX:22265971 [GRCh37] ChrX:Xp22.11 |
benign |
NM_000444.6(PHEX):c.1470A>T (p.Glu490Asp) |
single nucleotide variant |
not provided [RCV001501610] |
ChrX:22168377 [GRCh38] ChrX:22186494 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.1335C>A (p.Ala445=) |
single nucleotide variant |
not provided [RCV001484416] |
ChrX:22133555 [GRCh38] ChrX:22151672 [GRCh37] ChrX:Xp22.11 |
likely benign |
NM_000444.6(PHEX):c.2248T>C (p.Ter750Gln) |
single nucleotide variant |
not provided [RCV001378268] |
ChrX:22247951 [GRCh38] ChrX:22266068 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.423del (p.Cys142fs) |
deletion |
not provided [RCV001383461] |
ChrX:22076460 [GRCh38] ChrX:22094578 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1173+1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246374]|not provided [RCV001389006] |
ChrX:22111561 [GRCh38] ChrX:22129679 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1174-1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246375]|not provided [RCV001389007] |
ChrX:22114457 [GRCh38] ChrX:22132575 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1332G>A (p.Trp444Ter) |
single nucleotide variant |
not provided [RCV001389008] |
ChrX:22133552 [GRCh38] ChrX:22151669 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1210del (p.Asp404fs) |
deletion |
not provided [RCV001383638] |
ChrX:22114492 [GRCh38] ChrX:22132610 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22182690)_22186483del |
deletion |
not provided [RCV001376783] |
|
likely pathogenic |
NM_000444.6(PHEX):c.437-2A>G |
single nucleotide variant |
not provided [RCV001383459] |
ChrX:22077474 [GRCh38] ChrX:22095592 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.82G>A (p.Gly28Ser) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002495800]|not provided [RCV001514812] |
ChrX:22033087 [GRCh38] ChrX:22051205 [GRCh37] ChrX:Xp22.11 |
benign|likely benign |
NM_000444.6(PHEX):c.1640A>C (p.Gln547Pro) |
single nucleotide variant |
not provided [RCV001378763] |
ChrX:22190497 [GRCh38] ChrX:22208614 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22050695)_(22076478_?)del |
deletion |
not provided [RCV004578610] |
ChrX:22050695..22076478 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22186409)_(22266301_?)del |
deletion |
not provided [RCV001389402] |
ChrX:22186409..22266301 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2022del (p.Gly675fs) |
deletion |
not provided [RCV001384128] |
ChrX:22227563 [GRCh38] ChrX:22245680 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.824T>C (p.Leu275Pro) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003235569]|not provided [RCV001378985] |
ChrX:22094074 [GRCh38] ChrX:22112192 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22208541)_(22208639_?)del |
deletion |
not provided [RCV001384395] |
ChrX:22208541..22208639 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1826_1830del (p.Glu609fs) |
deletion |
not provided [RCV001386510] |
ChrX:22221667..22221671 [GRCh38] ChrX:22239784..22239788 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1843del (p.Thr615fs) |
deletion |
not provided [RCV001386511] |
ChrX:22221682 [GRCh38] ChrX:22239799 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1404+2_1404+6del |
deletion |
not provided [RCV001386307] |
ChrX:22133622..22133626 [GRCh38] ChrX:22151739..22151743 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2249A>T (p.Ter750Leu) |
single nucleotide variant |
not provided [RCV001379551] |
ChrX:22247952 [GRCh38] ChrX:22266069 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22108527)_(22108635_?)del |
deletion |
not provided [RCV001384397] |
ChrX:22108527..22108635 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2182C>T (p.Gln728Ter) |
single nucleotide variant |
not provided [RCV001390160] |
ChrX:22247885 [GRCh38] ChrX:22266002 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2096A>T (p.Glu699Val) |
single nucleotide variant |
not provided [RCV001755014] |
ChrX:22245358 [GRCh38] ChrX:22263475 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1376C>A (p.Ala459Glu) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002227912] |
ChrX:22133596 [GRCh38] ChrX:22151713 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.673del (p.Ala225fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250199] |
ChrX:22090438 [GRCh38] ChrX:22108556 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.705C>A (p.Tyr235Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250201] |
ChrX:22090470 [GRCh38] ChrX:22108588 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.732+3_732+6del |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250202] |
ChrX:22090498..22090501 [GRCh38] ChrX:22108616..22108619 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1302+2T>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250206] |
ChrX:22114588 [GRCh38] ChrX:22132706 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1718del (p.Ala573fs) |
deletion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250214] |
ChrX:22219053 [GRCh38] ChrX:22237170 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1769-1G>A |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250215] |
ChrX:22221612 [GRCh38] ChrX:22239729 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1779T>A (p.Tyr593Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250216]|not provided [RCV003094034] |
ChrX:22221623 [GRCh38] ChrX:22239740 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1840A>T (p.Lys614Ter) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250217] |
ChrX:22221684 [GRCh38] ChrX:22239801 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2132G>T (p.Ser711Ile) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002250221] |
ChrX:22245394 [GRCh38] ChrX:22263511 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1325_1326insCCCACCC (p.Arg443fs) |
insertion |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002227913] |
ChrX:22133545..22133546 [GRCh38] ChrX:22151662..22151663 [GRCh37] ChrX:Xp22.11 |
pathogenic |
Single allele |
complex |
Turner syndrome [RCV002280670] |
ChrX:590376..56315041 [GRCh37] ChrX:Xp22.33-11.21 |
pathogenic |
NM_000444.6(PHEX):c.874dup (p.Thr292fs) |
duplication |
not provided [RCV001870621] |
ChrX:22096977..22096978 [GRCh38] ChrX:22115095..22115096 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.64_65delinsTT (p.Ala22Phe) |
indel |
not provided [RCV001806554] |
ChrX:22033069..22033070 [GRCh38] ChrX:22051187..22051188 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1586+3G>T |
single nucleotide variant |
not provided [RCV002009028] |
ChrX:22178379 [GRCh38] ChrX:22196496 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1229_1232del (p.Ile410fs) |
deletion |
not provided [RCV001949567] |
ChrX:22114512..22114515 [GRCh38] ChrX:22132630..22132633 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.759G>A (p.Met253Ile) |
single nucleotide variant |
not provided [RCV001857787] |
ChrX:22094009 [GRCh38] ChrX:22112127 [GRCh37] ChrX:Xp22.11 |
likely pathogenic|uncertain significance |
NM_000444.6(PHEX):c.2008G>A (p.Glu670Lys) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001823441] |
ChrX:22227549 [GRCh38] ChrX:22245666 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1302+1G>A |
single nucleotide variant |
not provided [RCV001910193] |
ChrX:22114587 [GRCh38] ChrX:22132705 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.755T>C (p.Phe252Ser) |
single nucleotide variant |
not provided [RCV001857790] |
ChrX:22094005 [GRCh38] ChrX:22112123 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22012410)_(22151761_?)del |
deletion |
not provided [RCV001946931] |
ChrX:22012410..22151761 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2147_2147+3del |
deletion |
not provided [RCV001947917] |
ChrX:22245407..22245410 [GRCh38] ChrX:22263524..22263527 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1053_1077dup (p.Lys360Ter) |
duplication |
not provided [RCV001908463] |
ChrX:22099124..22099125 [GRCh38] ChrX:22117242..22117243 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1152T>G (p.Tyr384Ter) |
single nucleotide variant |
not provided [RCV001949700] |
ChrX:22111539 [GRCh38] ChrX:22129657 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1316T>G (p.Val439Gly) |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843312] |
ChrX:22133536 [GRCh38] ChrX:22151653 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.567_568del (p.Gln189fs) |
deletion |
Hypophosphatemic rickets [RCV001843313] |
ChrX:22077605..22077606 [GRCh38] ChrX:22095723..22095724 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.652_655del (p.His218fs) |
deletion |
Hypophosphatemic rickets [RCV001843314] |
ChrX:22077690..22077693 [GRCh38] ChrX:22095808..22095811 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1336_1337insAATA (p.Phe446Ter) |
insertion |
Hypophosphatemic rickets [RCV001843318] |
ChrX:22133556..22133557 [GRCh38] ChrX:22151673..22151674 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2158_2165del (p.Gly719_Ala720insTer) |
deletion |
not provided [RCV001927515] |
ChrX:22247861..22247868 [GRCh38] ChrX:22265978..22265985 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.356T>G (p.Leu119Trp) |
single nucleotide variant |
not provided [RCV001946447] |
ChrX:22076394 [GRCh38] ChrX:22094512 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2084C>G (p.Ser695Cys) |
single nucleotide variant |
not provided [RCV001894706] |
ChrX:22245346 [GRCh38] ChrX:22263463 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1864T>C (p.Tyr622His) |
single nucleotide variant |
not provided [RCV002025377] |
ChrX:22221708 [GRCh38] ChrX:22239825 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1173+1G>T |
single nucleotide variant |
not provided [RCV001909612] |
ChrX:22111561 [GRCh38] ChrX:22129679 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2050_2055del (p.Phe684_Phe685del) |
deletion |
not provided [RCV001966063] |
ChrX:22227589..22227594 [GRCh38] ChrX:22245706..22245711 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.187+3_187+6del |
deletion |
not provided [RCV002042804] |
ChrX:22038538..22038541 [GRCh38] ChrX:22056656..22056659 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.10:g.(?_21755681)_(22266301_?)del |
deletion |
not provided [RCV001870831] |
ChrX:21755681..22266301 [GRCh37] ChrX:Xp22.12-22.11 |
pathogenic |
NC_000023.10:g.(?_22132556)_(22132724_?)del |
deletion |
not provided [RCV001927206] |
ChrX:22132556..22132724 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.933+1G>A |
single nucleotide variant |
not provided [RCV002002188] |
ChrX:22097039 [GRCh38] ChrX:22115157 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.11:g.22247852del |
deletion |
not provided [RCV001983061] |
ChrX:22247850 [GRCh38] ChrX:22265967 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1733_1736del (p.Val578fs) |
deletion |
not provided [RCV001965043] |
ChrX:22219067..22219070 [GRCh38] ChrX:22237184..22237187 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2048T>A (p.Leu683His) |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843321] |
ChrX:22227589 [GRCh38] ChrX:22245706 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2071-1G>C |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246537]|Hypophosphatemic rickets [RCV001843331]|not provided [RCV001869827] |
ChrX:22245332 [GRCh38] ChrX:22263449 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1966-1G>A |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843333]|not provided [RCV001885369] |
ChrX:22227506 [GRCh38] ChrX:22245623 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.142dup (p.Gln48fs) |
duplication |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV001837613] |
ChrX:22038490..22038491 [GRCh38] ChrX:22056608..22056609 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.304G>T (p.Gly102Trp) |
single nucleotide variant |
not provided [RCV002024302] |
ChrX:22047166 [GRCh38] ChrX:22065284 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1080-3C>G |
single nucleotide variant |
not provided [RCV001914236] |
ChrX:22111464 [GRCh38] ChrX:22129582 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2214_2234del (p.Met739_Ser745del) |
deletion |
not provided [RCV001890894] |
ChrX:22247916..22247936 [GRCh38] ChrX:22266033..22266053 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2173del (p.Glu725fs) |
deletion |
not provided [RCV001969867] |
ChrX:22247876 [GRCh38] ChrX:22265993 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.134_135insTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNACCTCGTGATCCGCCCGCCCCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAAGGTCTCTT (p.Leu45fs) |
insertion |
not provided [RCV002007544] |
ChrX:22038473..22038474 [GRCh38] ChrX:22056591..22056592 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.934-1G>A |
single nucleotide variant |
not provided [RCV002007253] |
ChrX:22099005 [GRCh38] ChrX:22117123 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.665_674del |
deletion |
Hypophosphatemic rickets [RCV001843315] |
ChrX:22090427..22090436 [GRCh38] ChrX:22108545..22108554 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.826A>T (p.Arg276Ter) |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843336] |
ChrX:22094076 [GRCh38] ChrX:22112194 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x1 |
copy number loss |
not provided [RCV001834509] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.496C>T (p.Arg166Cys) |
single nucleotide variant |
not provided [RCV001928010] |
ChrX:22077535 [GRCh38] ChrX:22095653 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1969T>A (p.Tyr657Asn) |
single nucleotide variant |
not provided [RCV002021085] |
ChrX:22227510 [GRCh38] ChrX:22245627 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.229T>A (p.Cys77Ser) |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843688] |
ChrX:22047091 [GRCh38] ChrX:22065209 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.316del (p.Trp106fs) |
deletion |
not provided [RCV001911139] |
ChrX:22047177 [GRCh38] ChrX:22065295 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x3 |
copy number gain |
not provided [RCV001829212] |
ChrX:168546..155233731 [GRCh37] ChrX:Xp22.33-q28 |
pathogenic |
NM_000444.6(PHEX):c.1621T>G (p.Tyr541Asp) |
single nucleotide variant |
not provided [RCV002006303] |
ChrX:22190478 [GRCh38] ChrX:22208595 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.663+1G>T |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843334]|not provided [RCV001869828] |
ChrX:22077703 [GRCh38] ChrX:22095821 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1970A>G (p.Tyr657Cys) |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843692]|not provided [RCV001869857] |
ChrX:22227511 [GRCh38] ChrX:22245628 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2071-2A>C |
single nucleotide variant |
not provided [RCV001982901] |
ChrX:22245331 [GRCh38] ChrX:22263448 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.849+1G>T |
single nucleotide variant |
not provided [RCV001909591] |
ChrX:22094100 [GRCh38] ChrX:22112218 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1079+1G>T |
single nucleotide variant |
not provided [RCV001928075] |
ChrX:22099152 [GRCh38] ChrX:22117270 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1220T>G (p.Val407Gly) |
single nucleotide variant |
not provided [RCV002043846] |
ChrX:22114504 [GRCh38] ChrX:22132622 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1735G>T (p.Gly579Ter) |
single nucleotide variant |
not provided [RCV002002027] |
ChrX:22219070 [GRCh38] ChrX:22237187 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1482+2T>A |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843335] |
ChrX:22168391 [GRCh38] ChrX:22186508 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1875_1882dup (p.Lys628fs) |
duplication |
not provided [RCV001889666] |
ChrX:22221717..22221718 [GRCh38] ChrX:22239834..22239835 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2188G>T (p.Ala730Ser) |
single nucleotide variant |
Hypophosphatemic rickets [RCV001843696] |
ChrX:22247891 [GRCh38] ChrX:22266008 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1920_1929del (p.Gly641fs) |
deletion |
Hypophosphatemic rickets [RCV001843316] |
ChrX:22226462..22226471 [GRCh38] ChrX:22244579..22244588 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1965+1del |
deletion |
Hypophosphatemic rickets [RCV001843317] |
ChrX:22226507 [GRCh38] ChrX:22244624 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1536T>A (p.Tyr512Ter) |
single nucleotide variant |
not provided [RCV001946658] |
ChrX:22178326 [GRCh38] ChrX:22196443 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22231001)_(22231095_?)del |
deletion |
not provided [RCV001890686] |
ChrX:22231001..22231095 [GRCh37] ChrX:Xp22.11 |
pathogenic |
GRCh37/hg19 Xp22.12-22.11(chrX:20760624-22571267)x2 |
copy number gain |
not provided [RCV001827761] |
ChrX:20760624..22571267 [GRCh37] ChrX:Xp22.12-22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1387dup (p.Arg463fs) |
duplication |
not provided [RCV001920410] |
ChrX:22133603..22133604 [GRCh38] ChrX:22151720..22151721 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1769-2A>G |
single nucleotide variant |
not provided [RCV001963299] |
ChrX:22221611 [GRCh38] ChrX:22239728 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1937A>G (p.Asp646Gly) |
single nucleotide variant |
not provided [RCV001999762] |
ChrX:22226480 [GRCh38] ChrX:22244597 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1138del (p.Arg380fs) |
deletion |
not provided [RCV001962439] |
ChrX:22111525 [GRCh38] ChrX:22129643 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2199T>A (p.Cys733Ter) |
single nucleotide variant |
not provided [RCV001942301] |
ChrX:22247902 [GRCh38] ChrX:22266019 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22196370)_(22196513_?)del |
deletion |
not provided [RCV001962906] |
ChrX:22196370..22196513 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22129565)_(22132724_?)del |
deletion |
not provided [RCV001999810] |
ChrX:22129565..22132724 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1079+2_1079+5del |
deletion |
not provided [RCV001942327] |
ChrX:22099150..22099153 [GRCh38] ChrX:22117268..22117271 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1646-2A>G |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246619]|not provided [RCV001942332] |
ChrX:22212902 [GRCh38] ChrX:22231019 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1087G>C (p.Ala363Pro) |
single nucleotide variant |
not provided [RCV002037735] |
ChrX:22111474 [GRCh38] ChrX:22129592 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1646-1G>C |
single nucleotide variant |
not provided [RCV001999744] |
ChrX:22212903 [GRCh38] ChrX:22231020 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.907del (p.Ser303fs) |
deletion |
not provided [RCV001942321] |
ChrX:22097010 [GRCh38] ChrX:22115128 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1946_1954del (p.Gly649_Arg651del) |
deletion |
not provided [RCV002037774] |
ChrX:22226488..22226496 [GRCh38] ChrX:22244605..22244613 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.161dup (p.Cys54fs) |
duplication |
not provided [RCV001941980] |
ChrX:22038510..22038511 [GRCh38] ChrX:22056628..22056629 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22186409)_(22186526_?)del |
deletion |
not provided [RCV002019848] |
ChrX:22186409..22186526 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1645+4A>C |
single nucleotide variant |
not provided [RCV002036559] |
ChrX:22190506 [GRCh38] ChrX:22208623 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.413_419dup (p.Ser141fs) |
duplication |
not provided [RCV001939758] |
ChrX:22076449..22076450 [GRCh38] ChrX:22094567..22094568 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.807del (p.His269fs) |
deletion |
not provided [RCV002037843] |
ChrX:22094057 [GRCh38] ChrX:22112175 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.981C>A (p.Tyr327Ter) |
single nucleotide variant |
not provided [RCV001886790] |
ChrX:22099053 [GRCh38] ChrX:22117171 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.255T>A (p.Cys85Ter) |
single nucleotide variant |
not provided [RCV001994611] |
ChrX:22047117 [GRCh38] ChrX:22065235 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1501_1506del (p.Asp501_Tyr502del) |
deletion |
not provided [RCV002038711] |
ChrX:22178290..22178295 [GRCh38] ChrX:22196407..22196412 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.732+1G>T |
single nucleotide variant |
not provided [RCV001886471] |
ChrX:22090498 [GRCh38] ChrX:22108616 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1985del (p.Asn662fs) |
deletion |
not provided [RCV002000135] |
ChrX:22227524 [GRCh38] ChrX:22245641 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_21958943)_(22051261_?)del |
deletion |
not provided [RCV001942138] |
ChrX:21958943..22051261 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22151620)_(22151761_?)del |
deletion |
not provided [RCV001942139] |
ChrX:22151620..22151761 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22239710)_(22239880_?)del |
deletion |
not provided [RCV001942141] |
ChrX:22239710..22239880 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22265969)_(22266663_?)del |
deletion |
not provided [RCV001942150] |
ChrX:22265969..22266663 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1921G>T (p.Gly641Ter) |
single nucleotide variant |
not provided [RCV002037969] |
ChrX:22226464 [GRCh38] ChrX:22244581 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1426G>A (p.Val476Ile) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV003134324]|not provided [RCV002001054] |
ChrX:22168333 [GRCh38] ChrX:22186450 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.10:g.(?_22186409)_(22208639_?)dup |
duplication |
not provided [RCV002019485] |
ChrX:22186409..22208639 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.732+3A>T |
single nucleotide variant |
not provided [RCV001903012] |
ChrX:22090500 [GRCh38] ChrX:22108618 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.350-1G>C |
single nucleotide variant |
not provided [RCV001887585] |
ChrX:22076387 [GRCh38] ChrX:22094505 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1046A>G (p.Asp349Gly) |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002246658]|not provided [RCV002026635] |
ChrX:22099118 [GRCh38] ChrX:22117236 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1769-6_1784dup |
duplication |
not provided [RCV001943808] |
ChrX:22221606..22221607 [GRCh38] ChrX:22239723..22239724 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.10:g.(?_22056567)_(22056675_?)del |
deletion |
not provided [RCV001996126] |
ChrX:22056567..22056675 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NC_000023.10:g.(?_22115053)_(22115176_?)del |
deletion |
not provided [RCV001996140] |
ChrX:22115053..22115176 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.2071-1G>T |
single nucleotide variant |
not provided [RCV001899338] |
ChrX:22245332 [GRCh38] ChrX:22263449 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.227_240del (p.Pro76fs) |
deletion |
not provided [RCV002011958] |
ChrX:22047087..22047100 [GRCh38] ChrX:22065205..22065218 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1951del (p.Arg651fs) |
deletion |
not provided [RCV002014558] |
ChrX:22226494 [GRCh38] ChrX:22244611 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22094486)_(22117289_?)dup |
duplication |
not provided [RCV001996198] |
ChrX:22094486..22117289 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.1724G>A (p.Gly575Glu) |
single nucleotide variant |
not provided [RCV001898345] |
ChrX:22219059 [GRCh38] ChrX:22237176 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22112081)_(22117289_?)del |
deletion |
not provided [RCV001956564] |
ChrX:22112081..22117289 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1185del (p.Thr396fs) |
deletion |
not provided [RCV001930229] |
ChrX:22114466 [GRCh38] ChrX:22132584 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.943_946del (p.Leu315fs) |
microsatellite |
not provided [RCV001934000] |
ChrX:22099011..22099014 [GRCh38] ChrX:22117129..22117132 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.895A>T (p.Lys299Ter) |
single nucleotide variant |
not provided [RCV001934032] |
ChrX:22097000 [GRCh38] ChrX:22115118 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.349+1G>T |
single nucleotide variant |
not provided [RCV001953466] |
ChrX:22047212 [GRCh38] ChrX:22065330 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.444del (p.Ile148fs) |
deletion |
not provided [RCV001994638] |
ChrX:22077482 [GRCh38] ChrX:22095600 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22094486)_(22266301_?)del |
deletion |
not provided [RCV001953809] |
ChrX:22094486..22266301 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.436+6T>A |
single nucleotide variant |
not provided [RCV001989381] |
ChrX:22076480 [GRCh38] ChrX:22094598 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22265948)_(22266301_?)del |
deletion |
not provided [RCV001951398] |
ChrX:22265948..22266301 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1052_1053insAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATANNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAGATTTGTT (p.Phe351delinsLeuAspIleProAsnAlaArgTer) |
insertion |
not provided [RCV001930784] |
ChrX:22099113..22099114 [GRCh38] ChrX:22117231..22117232 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_21985294)_(22196513_?)del |
deletion |
not provided [RCV001972444] |
ChrX:21985294..22196513 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.719del (p.Thr240fs) |
deletion |
not provided [RCV001918811] |
ChrX:22090484 [GRCh38] ChrX:22108602 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22108527)_(22108635_?)dup |
duplication |
not provided [RCV002014088] |
ChrX:22108527..22108635 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NC_000023.10:g.(?_22245604)_(22245748_?)del |
deletion |
not provided [RCV002011614] |
ChrX:22245604..22245748 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NM_000444.6(PHEX):c.931C>T (p.Gln311Ter) |
single nucleotide variant |
not provided [RCV001884405] |
ChrX:22097036 [GRCh38] ChrX:22115154 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1206del (p.Gln402fs) |
deletion |
not provided [RCV001994690] |
ChrX:22114489 [GRCh38] ChrX:22132607 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22231001)_(22266301_?)dup |
duplication |
not provided [RCV002031939] |
ChrX:22231001..22266301 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.1324G>T (p.Val442Phe) |
single nucleotide variant |
not provided [RCV002036699] |
ChrX:22133544 [GRCh38] ChrX:22151661 [GRCh37] ChrX:Xp22.11 |
conflicting interpretations of pathogenicity|uncertain significance |
NM_000444.6(PHEX):c.1700+5G>A |
single nucleotide variant |
not provided [RCV002026081] |
ChrX:22212963 [GRCh38] ChrX:22231080 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NM_000444.6(PHEX):c.1059del (p.Ile353_Leu354insTer) |
deletion |
not provided [RCV001940044] |
ChrX:22099131 [GRCh38] ChrX:22117249 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2157_2160dup (p.Ile721fs) |
duplication |
not provided [RCV001939440] |
ChrX:22247859..22247860 [GRCh38] ChrX:22265976..22265977 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1590G>A (p.Trp530Ter) |
single nucleotide variant |
not provided [RCV001951301] |
ChrX:22190447 [GRCh38] ChrX:22208564 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.409dup (p.Ile137fs) |
duplication |
not provided [RCV001905581] |
ChrX:22076443..22076444 [GRCh38] ChrX:22094561..22094562 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1168del (p.Ser390fs) |
deletion |
not provided [RCV001993371] |
ChrX:22111555 [GRCh38] ChrX:22129673 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2099del (p.Ala700fs) |
deletion |
not provided [RCV001870225] |
ChrX:22245361 [GRCh38] ChrX:22263478 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.2240G>C (p.Arg747Pro) |
single nucleotide variant |
not provided [RCV002034135] |
ChrX:22247943 [GRCh38] ChrX:22266060 [GRCh37] ChrX:Xp22.11 |
likely pathogenic |
NC_000023.10:g.(?_22186409)_(22266301_?)dup |
duplication |
not provided [RCV002014090] |
ChrX:22186409..22266301 [GRCh37] ChrX:Xp22.11 |
uncertain significance |
NM_000444.6(PHEX):c.2071-2_2072del |
deletion |
not provided [RCV001883370] |
ChrX:22245330..22245333 [GRCh38] ChrX:22263447..22263450 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.853dup (p.Met285fs) |
duplication |
not provided [RCV002035430] |
ChrX:22096956..22096957 [GRCh38] ChrX:22115074..22115075 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1873_1876dup (p.Tyr626fs) |
duplication |
not provided [RCV001974733] |
ChrX:22221716..22221717 [GRCh38] ChrX:22239833..22239834 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.643dup (p.Ser215fs) |
duplication |
not provided [RCV001978837] |
ChrX:22077681..22077682 [GRCh38] ChrX:22095799..22095800 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NC_000023.10:g.(?_22239710)_(22245748_?)dup |
duplication |
not provided [RCV001996190] |
ChrX:22239710..22245748 [GRCh37] ChrX:Xp22.11 |
pathogenic|likely pathogenic |
NC_000023.10:g.(?_22244540)_(22245748_?)del |
deletion |
not provided [RCV001951350] |
ChrX:22244540..22245748 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.202dup (p.Ser68fs) |
duplication |
not provided [RCV001951241] |
ChrX:22047062..22047063 [GRCh38] ChrX:22065180..22065181 [GRCh37] ChrX:Xp22.11 |
pathogenic |
NM_000444.6(PHEX):c.1587-16G>T |
single nucleotide variant |
Familial X-linked hypophosphatemic vitamin D refractory rickets [RCV002500 |