Nup88 (nucleoporin 88) - Rat Genome Database
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Gene: Nup88 (nucleoporin 88) Mus musculus
Analyze
Symbol: Nup88
Name: nucleoporin 88
RGD ID: 733612
MGI Page MGI
Description: Is expressed in central nervous system; early conceptus; gonad; and sensory organ. Human ortholog(s) of this gene implicated in fetal akinesia deformation sequence syndrome 4. Orthologous to human NUP88 (nucleoporin 88); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 88 kDa nucleoporin; 88kDa; nuclear pore complex protein Nup88; nucleoporin 88kDa; nucleoporin Nup88; Nup; Nup84; Pr; Prei2; preimplantation protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm19801  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,833,884 - 70,860,799 (-)NCBIGRCm39mm39
GRCm39 Ensembl1170,833,884 - 70,860,799 (-)Ensembl
GRCm381170,943,058 - 70,969,973 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,943,058 - 70,969,973 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,756,573 - 70,783,475 (-)NCBIGRCm37mm9NCBIm37
MGSCv361170,759,253 - 70,786,156 (-)NCBImm8
Celera1178,497,441 - 78,524,375 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear pore  (IBA,ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7545925   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11044607   PMID:11076861   PMID:11217851   PMID:11318612   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14610273   PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073   PMID:18606815   PMID:18621024   PMID:18799693   PMID:20360068   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:22922362   PMID:23086144   PMID:24457600   PMID:26731471   PMID:31427429  


Genomics

Comparative Map Data
Nup88
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,833,884 - 70,860,799 (-)NCBIGRCm39mm39
GRCm39 Ensembl1170,833,884 - 70,860,799 (-)Ensembl
GRCm381170,943,058 - 70,969,973 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,943,058 - 70,969,973 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,756,573 - 70,783,475 (-)NCBIGRCm37mm9NCBIm37
MGSCv361170,759,253 - 70,786,156 (-)NCBImm8
Celera1178,497,441 - 78,524,375 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.21NCBI
NUP88
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl175,360,963 - 5,419,676 (-)EnsemblGRCh38hg38GRCh38
GRCh38175,384,833 - 5,419,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37175,288,153 - 5,322,982 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,230,144 - 5,263,720 (-)NCBINCBI36hg18NCBI36
Build 34175,230,143 - 5,263,720NCBI
Celera175,305,791 - 5,339,368 (-)NCBI
Cytogenetic Map17p13.2NCBI
HuRef175,179,990 - 5,213,586 (-)NCBIHuRef
CHM1_1175,297,812 - 5,332,704 (-)NCBICHM1_1
Nup88
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,667,903 - 55,692,249 (-)NCBI
Rnor_6.0 Ensembl1057,581,828 - 57,606,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01057,581,828 - 57,606,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01057,326,777 - 57,351,383 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,849,428 - 57,874,078 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11057,863,050 - 57,887,701 (-)NCBI
Celera1054,813,735 - 54,837,939 (-)NCBICelera
Cytogenetic Map10q24NCBI
Nup88
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,749,910 - 10,780,423 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,749,910 - 10,780,423 (-)NCBIChiLan1.0ChiLan1.0
NUP88
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1175,426,379 - 5,460,375 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,426,379 - 5,460,375 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0175,434,448 - 5,468,004 (-)NCBIMhudiblu_PPA_v0panPan3
NUP88
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl531,366,244 - 31,389,780 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1531,366,213 - 31,389,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nup88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366772,385,289 - 2,417,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP88
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,562,436 - 51,601,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,562,455 - 51,603,095 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUP88
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,795,525 - 4,829,194 (-)NCBI
ChlSab1.1 Ensembl164,792,569 - 4,829,127 (-)Ensembl
Nup88
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,192,061 - 9,231,868 (-)NCBI

Position Markers
Nup88  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,943,246 - 70,944,147UniSTSGRCm38
Celera1178,497,616 - 78,498,517UniSTS
Cytogenetic Map11B4UniSTS
cM Map1142.0UniSTS
cM Map1142.0UniSTS
D11Mit320  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,953,368 - 70,953,486UniSTSGRCm38
MGSCv371170,766,870 - 70,766,988UniSTSGRCm37
Celera1178,507,739 - 78,507,857UniSTS
Cytogenetic Map11B4UniSTS
cM Map1143.0UniSTS
Whitehead Genetic1139.3UniSTS
Whitehead/MRC_RH11904.85UniSTS
Whitehead_YAC11 UniSTS
D11Die13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,948,658 - 70,948,759UniSTSGRCm38
MGSCv371170,762,160 - 70,762,261UniSTSGRCm37
Celera1178,503,028 - 78,503,129UniSTS
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
D11Die32  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,953,363 - 70,953,506UniSTSGRCm38
MGSCv371170,766,865 - 70,767,008UniSTSGRCm37
Celera1178,507,734 - 78,507,877UniSTS
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
D11Die33  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,954,150 - 70,954,353UniSTSGRCm38
MGSCv371170,767,652 - 70,767,855UniSTSGRCm37
Celera1178,508,521 - 78,508,751UniSTS
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
Nup88  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B4UniSTS
cM Map1142.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2099
Count of miRNA genes:760
Interacting mature miRNAs:1002
Transcripts:ENSMUST00000035283, ENSMUST00000108530, ENSMUST00000108531, ENSMUST00000123192, ENSMUST00000123917, ENSMUST00000128193, ENSMUST00000129615, ENSMUST00000133188, ENSMUST00000138634, ENSMUST00000141179, ENSMUST00000145336, ENSMUST00000148168, ENSMUST00000178253, ENSMUST00000178369, ENSMUST00000180225
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001083331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_075087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ532593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB442284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U01135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035283   ⟹   ENSMUSP00000048101
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,082 - 70,969,962 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108530   ⟹   ENSMUSP00000104170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,102 - 70,969,954 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108531   ⟹   ENSMUSP00000104171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,072 - 70,969,973 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,077 - 70,946,362 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123917
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,944,413 - 70,945,034 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128193
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,938 - 70,944,488 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129615
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,944,683 - 70,948,815 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133188
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,980 - 70,944,737 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138634
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,949,565 - 70,969,961 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,879 - 70,945,100 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145336
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,956,200 - 70,961,791 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,058 - 70,969,959 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178253   ⟹   ENSMUSP00000137024
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,943,176 - 70,969,880 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178369
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,954,461 - 70,956,462 (-)Ensembl
RefSeq Acc Id: ENSMUST00000180225
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,955,159 - 70,956,913 (-)Ensembl
RefSeq Acc Id: NM_001083331   ⟹   NP_001076800
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,833,884 - 70,860,799 (-)NCBI
GRCm381170,943,058 - 70,969,973 (-)NCBI
MGSCv371170,756,573 - 70,783,475 (-)RGD
Celera1178,497,428 - 78,524,375 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001276406   ⟹   NP_001263335
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,833,884 - 70,860,799 (-)NCBI
GRCm381170,943,058 - 70,969,973 (-)NCBI
Celera1178,497,428 - 78,524,375 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172394   ⟹   NP_765982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,833,884 - 70,860,799 (-)NCBI
GRCm381170,943,058 - 70,969,973 (-)NCBI
MGSCv371170,756,573 - 70,783,475 (-)RGD
Celera1178,497,428 - 78,524,375 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_075087
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,833,884 - 70,860,799 (-)NCBI
GRCm381170,943,058 - 70,969,973 (-)NCBI
Celera1178,497,428 - 78,524,375 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_765982   ⟸   NM_172394
- Peptide Label: isoform 1
- UniProtKB: Q8CEC0 (UniProtKB/Swiss-Prot),   Q5QNU0 (UniProtKB/TrEMBL),   Q8BQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001076800   ⟸   NM_001083331
- Peptide Label: isoform 2
- UniProtKB: Q8CEC0 (UniProtKB/Swiss-Prot),   Q5QNU0 (UniProtKB/TrEMBL),   Q8BQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263335   ⟸   NM_001276406
- Peptide Label: isoform 3
- UniProtKB: Q8CEC0 (UniProtKB/Swiss-Prot),   Q5QNU0 (UniProtKB/TrEMBL),   Q8BQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137024   ⟸   ENSMUST00000178253
RefSeq Acc Id: ENSMUSP00000104171   ⟸   ENSMUST00000108531
RefSeq Acc Id: ENSMUSP00000104170   ⟸   ENSMUST00000108530
RefSeq Acc Id: ENSMUSP00000048101   ⟸   ENSMUST00000035283

Promoters
RGD ID:6821474
Promoter ID:MM_KWN:8259
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000013740,   OTTMUST00000013743,   OTTMUST00000013744,   OTTMUST00000013745,   OTTMUST00000013746
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,757,506 - 70,760,572 (-)MPROMDB
RGD ID:6821476
Promoter ID:MM_KWN:8260
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000013739
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,761,356 - 70,762,807 (-)MPROMDB
RGD ID:6821992
Promoter ID:MM_KWN:8262
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108529,   NM_172394,   OTTMUST00000013710,   OTTMUST00000013712,   OTTMUST00000013713,   OTTMUST00000013714,   OTTMUST00000013716,   OTTMUST00000013717,   OTTMUST00000013738,   UC007JWV.1,   UC007JWW.1,   UC007JWY.1,   UC007JWZ.1,   UC007JXB.1,   UC007JXC.1,   UC007JXD.1,   UC007JXE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,782,321 - 70,783,907 (+)MPROMDB
RGD ID:8675380
Promoter ID:EPDNEW_M15720
Type:multiple initiation site
Name:Nup88_1
Description:Mus musculus nucleoporin 88 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,969,962 - 70,970,022EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104900 AgrOrtholog
Ensembl Genes ENSMUSG00000040667 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000048101 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104170 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104171 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137024 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035283 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108530 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108531 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000178253 ENTREZGENE, UniProtKB/TrEMBL
InterPro Nucleoporin_Nup88 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP88/NUP82 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104900 ENTREZGENE
NCBI Gene 19069 ENTREZGENE
PANTHER PTHR13257 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nup88 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup88 PhenoGen
UniProt J3QNZ2_MOUSE UniProtKB/TrEMBL
  NUP88_MOUSE UniProtKB/Swiss-Prot
  Q3TM09_MOUSE UniProtKB/TrEMBL
  Q3U9L4_MOUSE UniProtKB/TrEMBL
  Q5QNU0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BQF0 ENTREZGENE, UniProtKB/TrEMBL
  Q8CEC0 ENTREZGENE
UniProt Secondary Q80Z13 UniProtKB/Swiss-Prot
  Q8K090 UniProtKB/Swiss-Prot