Ccl17 (C-C motif chemokine ligand 17) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ccl17 (C-C motif chemokine ligand 17) Mus musculus
Analyze
Symbol: Ccl17
Name: C-C motif chemokine ligand 17
RGD ID: 733477
MGI Page MGI
Description: Predicted to enable CCR4 chemokine receptor binding activity and chemokine activity. Acts upstream of or within negative regulation of myoblast differentiation. Predicted to be active in extracellular space. Is expressed in several structures, including Sertoli cell; central nervous system; hemolymphoid system; integument; and mandible. Orthologous to human CCL17 (C-C motif chemokine ligand 17).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ABCD-; Abcd-2; C-C motif chemokine 17; CC chemokine TARC; chemokine (C-C motif) ligand 17; Scya; Scya17; Scya17l; small inducible cytokine subfamily A17; small inducible cytokine subfamily A17-like; small-inducible cytokine A17; TA; Tarc; thymus and activation-regulated chemokine
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,535,996 - 95,538,666 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,537,081 - 95,538,664 (+)EnsemblGRCm39 Ensembl
GRCm38894,809,380 - 94,812,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,810,453 - 94,812,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,334,353 - 97,335,936 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,699,598 - 97,701,165 (+)NCBIMGSCv36mm8
Celera899,134,583 - 99,136,166 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-fluoro-2,4-dinitrobenzene  (EXP)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,6-di-tert-butyl-4-methylphenol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methylcholanthrene  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (EXP)
allopurinol  (ISO)
alloxanthine  (ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Bandrowski's base  (ISO)
benomyl  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
Botulinum toxin type A  (EXP)
budesonide  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP,ISO)
cefaloridine  (ISO)
ceric oxide  (EXP,ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
cisplatin  (EXP)
cobalt atom  (EXP)
cordycepin  (EXP)
crocidolite asbestos  (EXP)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (EXP)
dexamethasone  (EXP)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
diflorasone  (EXP)
diisononyl phthalate  (EXP)
dioxygen  (EXP)
enzacamene  (ISO)
Fexofenadine hydrochloride  (ISO)
fragrance  (ISO)
furan  (ISO)
graphene oxide  (EXP)
iron(2+) sulfate (anhydrous)  (ISO)
isoprenaline  (ISO)
linuron  (EXP)
manganese(II) chloride  (ISO)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
naphthalene  (EXP)
nickel atom  (EXP,ISO)
nickel sulfate  (EXP,ISO)
nifuroxazide  (ISO)
ozone  (EXP)
pevonedistat  (ISO)
pirinixic acid  (EXP)
platycodin D  (ISO)
prostaglandin E2  (ISO)
quartz  (ISO)
resveratrol  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP)
tacrolimus hydrate  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
TMC-120A  (EXP)
toluene 2,4-diisocyanate  (EXP)
tremolite asbestos  (EXP)
trimellitic anhydride  (EXP)
undecane  (ISO)
valproic acid  (EXP)
zinc atom  (EXP)
zinc dichloride  (ISO)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Neutrophils in cystic fibrosis display a distinct gene expression pattern. Adib-Conquy M, etal., Mol Med. 2008 Jan-Feb;14(1-2):36-44.
2. ANG II receptor blockade enhances anti-inflammatory macrophages in anti-glomerular basement membrane glomerulonephritis. Aki K, etal., Am J Physiol Renal Physiol. 2010 Apr;298(4):F870-82. Epub 2010 Jan 13.
3. TARC and RANTES, but not CTACK, are induced in two models of allergic contact dermatitis. Effects of cilomilast and diflorasone diacetate on T-cell-attracting chemokines. Baumer W, etal., Br J Dermatol. 2004 Oct;151(4):823-30.
4. GGTI-2133, an inhibitor of geranylgeranyltransferase, inhibits infiltration of inflammatory cells into airways in mouse experimental asthma. Chiba Y, etal., Int J Immunopathol Pharmacol. 2009 Oct-Dec;22(4):929-35.
5. Pulmonary T(H)2 response in Pseudomonas aeruginosa-infected patients with cystic fibrosis. Hartl D, etal., J Allergy Clin Immunol. 2006 Jan;117(1):204-11. Epub 2005 Nov 28.
6. CCL22 and CCL17 in rat radiation pneumonitis and in human idiopathic pulmonary fibrosis. Inoue T, etal., Eur Respir J. 2004 Jul;24(1):49-56.
7. Role of CCR4 ligands, CCL17 and CCL22, during Schistosoma mansoni egg-induced pulmonary granuloma formation in mice. Jakubzick C, etal., Am J Pathol. 2004 Oct;165(4):1211-21.
8. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
9. Intervention of thymus and activation-regulated chemokine attenuates the development of allergic airway inflammation and hyperresponsiveness in mice. Kawasaki S, etal., J Immunol. 2001 Feb 1;166(3):2055-62.
10. Pathogenesis of cBFL in common with IPF? Correlation of IP-10/TARC ratio with histological patterns. Kishi M, etal., Thorax. 2008 Sep;63(9):810-6. Epub 2008 Feb 14.
11. Effects of corticosteroid on the expression of thymus and activation-regulated chemokine in a murine model of allergic asthma. Kurokawa M, etal., Int Arch Allergy Immunol. 2005;137 Suppl 1:60-8. Epub 2005 Jun 2.
12. Comparison of serum markers for allergic bronchopulmonary aspergillosis in cystic fibrosis. Latzin P, etal., Eur Respir J. 2008 Jan;31(1):36-42. Epub 2007 Sep 26.
13. MGDs mouse GO annotations MGD data from the GO Consortium
14. Elevated levels of thymus- and activation-regulated chemokine in bronchoalveolar lavage fluid from patients with eosinophilic pneumonia. Miyazaki E, etal., Am J Respir Crit Care Med. 2002 Apr 15;165(8):1125-31.
15. Respiratory syncytial virus synergizes with Th2 cytokines to induce optimal levels of TARC/CCL17. Monick MM, etal., J Immunol. 2007 Aug 1;179(3):1648-58.
16. Circulating levels of both Th1 and Th2 chemokines are elevated in patients with sarcoidosis. Nureki S, etal., Respir Med. 2008 Feb;102(2):239-47. Epub 2007 Oct 18.
17. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
18. Serum thymus and activation regulated chemokine levels post-lung transplantation as a predictor for the bronchiolitis obliterans syndrome. Paantjens AW, etal., Clin Exp Immunol. 2008 Nov;154(2):202-8. Epub 2008 Sep 8.
19. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
20. Mouse MP Annotation Import Pipeline RGD automated import pipeline
21. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
22. Elevated expression of TARC (CCL17) and MDC (CCL22) in models of cigarette smoke-induced pulmonary inflammation. Ritter M, etal., Biochem Biophys Res Commun. 2005 Aug 19;334(1):254-62.
23. Immunoreactivity profile of peripheral blood mononuclear cells from patients with ragweed-induced allergic rhinitis. Sun J, etal., Clin Exp Allergy. 2007 Jun;37(6):901-8.
24. TARC and IL-5 expression correlates with tissue eosinophilia in peripheral T-cell lymphomas. Thielen C, etal., Leuk Res. 2008 Sep;32(9):1431-8. doi: 10.1016/j.leukres.2008.02.016. Epub 2008 Apr 18.
25. Chemokine receptor 4 plays a key role in T cell recruitment into the airways of asthmatic patients. Vijayanand P, etal., J Immunol. 2010 Apr 15;184(8):4568-74. Epub 2010 Mar 17.
26. Expression and cellular provenance of thymic stromal lymphopoietin and chemokines in patients with severe asthma and chronic obstructive pulmonary disease. Ying S, etal., J Immunol. 2008 Aug 15;181(4):2790-8.
27. Macrophage derived chemokine (CCL22), thymus and activation-regulated chemokine (CCL17), and CCR4 in idiopathic pulmonary fibrosis. Yogo Y, etal., Respir Res. 2009 Aug 29;10:80.
Additional References at PubMed
PMID:9835618   PMID:10349636   PMID:10508243   PMID:10508268   PMID:10594742   PMID:11042159   PMID:11076861   PMID:11093154   PMID:11472060   PMID:12080938   PMID:12126650   PMID:12477932  
PMID:12615900   PMID:14610273   PMID:14734716   PMID:15383605   PMID:16141072   PMID:16141073   PMID:16166738   PMID:16239514   PMID:16365450   PMID:16602821   PMID:16807117   PMID:16856206  
PMID:17621629   PMID:18052724   PMID:18184698   PMID:18287559   PMID:18480254   PMID:18824549   PMID:19005490   PMID:19050277   PMID:19414552   PMID:19923453   PMID:20190758   PMID:20421491  
PMID:21267068   PMID:21398605   PMID:21521373   PMID:21633167   PMID:21707761   PMID:21873635   PMID:22057112   PMID:22539295   PMID:23435120   PMID:23844157   PMID:24123684   PMID:24136200  
PMID:24339934   PMID:24501019   PMID:24661094   PMID:25595646   PMID:26371249   PMID:27211851   PMID:27469058   PMID:27474745   PMID:27525438   PMID:28228256   PMID:28381538   PMID:28642092  
PMID:29563337   PMID:29871928   PMID:30120124   PMID:30277599   PMID:30341279   PMID:30684382   PMID:30988114   PMID:31511356   PMID:31579932   PMID:32274496   PMID:32461237   PMID:32608482  
PMID:33597749   PMID:33789177   PMID:33929099   PMID:33945673   PMID:34060489   PMID:35113652   PMID:36047204   PMID:36426975   PMID:36752267   PMID:36870575   PMID:37001380   PMID:37225052  
PMID:37742620   PMID:38348028   PMID:38355793  


Genomics

Comparative Map Data
Ccl17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,535,996 - 95,538,666 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,537,081 - 95,538,664 (+)EnsemblGRCm39 Ensembl
GRCm38894,809,380 - 94,812,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,810,453 - 94,812,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,334,353 - 97,335,936 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,699,598 - 97,701,165 (+)NCBIMGSCv36mm8
Celera899,134,583 - 99,136,166 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.85NCBI
CCL17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,396,093 - 57,416,063 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,404,767 - 57,416,063 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,438,679 - 57,449,975 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,996,180 - 56,007,475 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,996,179 - 56,007,475NCBI
Celera1641,938,673 - 41,949,969 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,306,559 - 43,317,854 (+)NCBIHuRef
CHM1_11658,846,760 - 58,858,057 (+)NCBICHM1_1
T2T-CHM13v2.01663,191,214 - 63,211,239 (+)NCBIT2T-CHM13v2.0
Ccl17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,208,120 - 10,218,340 (-)NCBIGRCr8
mRatBN7.21910,202,128 - 10,203,903 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,202,128 - 10,203,819 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,166,373 - 10,167,824 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,933,217 - 10,934,668 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,220,166 - 10,221,617 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,619,220 - 10,620,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,619,220 - 10,620,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,614,027 - 10,615,478 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,641,376 - 10,642,827 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,646,201 - 10,647,653 (-)NCBI
Celera1910,088,700 - 10,090,151 (-)NCBICelera
Cytogenetic Map19p13NCBI
Ccl17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,053,061 - 15,054,572 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,052,616 - 15,054,732 (+)NCBIChiLan1.0ChiLan1.0
CCL17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,880,374 - 66,883,558 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,801,377 - 72,804,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,678,518 - 37,689,350 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,810,923 - 56,822,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,819,949 - 56,822,131 (+)Ensemblpanpan1.1panPan2
CCL17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,001,463 - 59,014,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,001,464 - 59,005,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,630,918 - 55,633,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,539,866 - 59,550,154 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,539,866 - 59,551,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,371,394 - 56,373,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,379,129 - 57,381,635 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,272,358 - 58,274,870 (-)NCBIUU_Cfam_GSD_1.0
Ccl17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,112,663 - 50,114,927 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,474,961 - 9,476,398 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,475,013 - 9,476,326 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,345,941 - 19,348,926 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,345,929 - 19,372,972 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,342,591 - 17,345,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCL17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,343,525 - 43,350,096 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,346,329 - 43,348,599 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,869,286 - 32,872,957 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccl17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,655,801 - 28,657,470 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,655,288 - 28,657,563 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccl17
100 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:133
Interacting mature miRNAs:141
Transcripts:ENSMUST00000034232
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
14696809Rbcn3_mrod bipolar cell number 3 (mouse)895056628102856632Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse

Markers in Region
PMC152071P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38894,811,885 - 94,812,004UniSTSGRCm38
MGSCv37897,335,785 - 97,335,904UniSTSGRCm37
Celera899,136,015 - 99,136,134UniSTS
Cytogenetic Map8C5UniSTS
cM Map845.0UniSTS
AJ242587  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38894,811,898 - 94,812,028UniSTSGRCm38
MGSCv37897,335,798 - 97,335,928UniSTSGRCm37
Celera899,136,028 - 99,136,158UniSTS
Cytogenetic Map8C5UniSTS
cM Map845.0UniSTS
Whitehead/MRC_RH81149.26UniSTS
Ccl17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38894,811,277 - 94,811,833UniSTSGRCm38
MGSCv37897,335,177 - 97,335,733UniSTSGRCm37
Celera899,135,407 - 99,135,963UniSTS
Cytogenetic Map8C5UniSTS
cM Map845.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000034232   ⟹   ENSMUSP00000034232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl895,537,081 - 95,538,664 (+)Ensembl
GRCm38.p6 Ensembl894,810,453 - 94,812,036 (+)Ensembl
RefSeq Acc Id: NM_011332   ⟹   NP_035462
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39895,537,081 - 95,538,664 (+)NCBI
GRCm38894,810,453 - 94,812,036 (+)NCBI
MGSCv37897,334,353 - 97,335,936 (+)RGD
Celera899,134,583 - 99,136,166 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530782   ⟹   XP_006530845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39895,535,996 - 95,538,666 (+)NCBI
GRCm38894,809,380 - 94,812,038 (+)NCBI
Sequence:
RefSeq Acc Id: NP_035462   ⟸   NM_011332
- Peptide Label: precursor
- UniProtKB: Q9R043 (UniProtKB/Swiss-Prot),   F6R5P4 (UniProtKB/TrEMBL),   Q9WUZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530845   ⟸   XM_006530782
- Peptide Label: isoform X1
- UniProtKB: Q9WUZ6 (UniProtKB/Swiss-Prot),   Q9R043 (UniProtKB/Swiss-Prot),   F6R5P4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000034232   ⟸   ENSMUST00000034232
Protein Domains
Chemokine interleukin-8-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F6R5P4-F1-model_v2 AlphaFold F6R5P4 1-103 view protein structure

Promoters
RGD ID:8667917
Promoter ID:EPDNEW_M11990
Type:single initiation site
Name:Ccl17_1
Description:Mus musculus chemokine (C-C motif) ligand 17 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38894,810,454 - 94,810,514EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1329039 AgrOrtholog
Ensembl Genes ENSMUSG00000031780 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034232 ENTREZGENE
  ENSMUST00000034232.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20295 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1329039 ENTREZGENE
NCBI Gene 20295 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam IL8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccl17 PhenoGen
PROSITE SMALL_CYTOKINES_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Chemokine_IL8 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt CCL17_MOUSE UniProtKB/Swiss-Prot
  F6R5P4 ENTREZGENE, UniProtKB/TrEMBL
  Q9R043 ENTREZGENE
  Q9WUZ6 ENTREZGENE
UniProt Secondary Q9R043 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Ccl17  C-C motif chemokine ligand 17  Ccl17  chemokine (C-C motif) ligand 17  Symbol and/or name change 5135510 APPROVED