Slco3a1 (solute carrier organic anion transporter family, member 3a1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slco3a1 (solute carrier organic anion transporter family, member 3a1) Mus musculus
Analyze
Symbol: Slco3a1
Name: solute carrier organic anion transporter family, member 3a1
RGD ID: 733472
MGI Page MGI
Description: Predicted to enable prostaglandin transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in positive regulation of protein phosphorylation; prostaglandin transport; and sodium-independent organic anion transport. Predicted to act upstream of or within monoatomic ion transport. Predicted to be located in basal plasma membrane. Predicted to be active in basolateral plasma membrane. Is expressed in nervous system and thyroid gland. Orthologous to human SLCO3A1 (solute carrier organic anion transporter family member 3A1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5830414C08Rik; A; androgen regulated protein 1; Anr1; MJA; MJAM; OAT; OATP-D; organic anion-transporting polypeptide D; R75096; Slc21; Slc21a11; sodium-independent organic anion transporter D; solute carrier family 21 (organic anion transporter), member 11; solute carrier family 21 member 11; solute carrier organic anion transporter family member 3A1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39773,925,166 - 74,204,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl773,925,167 - 74,204,528 (-)EnsemblGRCm39 Ensembl
GRCm38774,275,418 - 74,554,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl774,275,419 - 74,554,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37781,420,304 - 81,699,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36774,148,931 - 74,428,293 (-)NCBIMGSCv36mm8
Celera771,722,299 - 72,002,017 (-)NCBICelera
Cytogenetic Map7D1NCBI
cM Map742.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-Iodothyronamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amosite asbestos  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzylpenicillin  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
estrone 3-sulfate  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
flavonoids  (ISO)
fluorescein (lactone form)  (ISO)
folic acid  (EXP)
fonofos  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
indoxyl sulfate  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (ISO)
microcystin-LR  (ISO)
Muraglitazar  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (EXP)
simvastatin hydroxy acid  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
terbufos  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (EXP)
toluene  (ISO)
troglitazone  (ISO)
undecane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9449642   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16403838   PMID:19884258  
PMID:20679730   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23643386   PMID:23696569   PMID:24265449   PMID:30063921   PMID:31541165   PMID:38187761   PMID:38473715  


Genomics

Comparative Map Data
Slco3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39773,925,166 - 74,204,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl773,925,167 - 74,204,528 (-)EnsemblGRCm39 Ensembl
GRCm38774,275,418 - 74,554,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl774,275,419 - 74,554,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37781,420,304 - 81,699,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36774,148,931 - 74,428,293 (-)NCBIMGSCv36mm8
Celera771,722,299 - 72,002,017 (-)NCBICelera
Cytogenetic Map7D1NCBI
cM Map742.95NCBI
SLCO3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381591,853,708 - 92,172,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1591,853,708 - 92,172,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371592,396,938 - 92,715,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361590,197,950 - 90,507,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341590,197,949 - 90,507,783NCBI
Celera1568,809,625 - 69,127,530 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1568,535,792 - 68,852,636 (+)NCBIHuRef
CHM1_11592,238,177 - 92,556,655 (+)NCBICHM1_1
T2T-CHM13v2.01589,615,458 - 89,934,870 (+)NCBIT2T-CHM13v2.0
Slco3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81137,516,037 - 137,797,836 (-)NCBIGRCr8
mRatBN7.21128,106,232 - 128,388,043 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,106,228 - 128,387,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1136,062,978 - 136,336,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,233,107 - 143,506,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,101,551 - 136,374,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01135,790,854 - 136,073,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1135,790,810 - 136,073,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01136,793,300 - 137,070,909 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41129,580,126 - 130,077,110 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11129,658,468 - 130,155,453 (-)NCBI
Celera1120,235,201 - 120,503,802 (-)NCBICelera
Cytogenetic Map1q31NCBI
Slco3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541620,186,940 - 20,483,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541620,186,940 - 20,483,844 (+)NCBIChiLan1.0ChiLan1.0
SLCO3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21681,399,080 - 81,720,058 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11585,099,736 - 85,420,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01570,537,924 - 70,858,714 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11589,735,202 - 90,055,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1589,739,022 - 90,054,678 (+)Ensemblpanpan1.1panPan2
SLCO3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1347,927,280 - 48,233,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl347,927,664 - 48,233,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha350,628,974 - 50,868,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0348,346,093 - 48,649,188 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl348,346,095 - 48,649,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1347,847,277 - 48,150,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0348,078,812 - 48,381,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0348,420,025 - 48,723,118 (-)NCBIUU_Cfam_GSD_1.0
Slco3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640135,491,779 - 135,786,720 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648310,547,687 - 10,778,752 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648310,554,049 - 10,778,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl786,777,920 - 87,103,309 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1786,777,919 - 87,103,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2792,719,394 - 93,045,275 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO3A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12910,418,938 - 10,735,503 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605935,952,514 - 36,274,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco3a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476811,536,168 - 11,855,331 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476811,537,311 - 11,855,224 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slco3a1
10335 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3467
Count of miRNA genes:942
Interacting mature miRNAs:1333
Transcripts:ENSMUST00000026897, ENSMUST00000098371, ENSMUST00000107453, ENSMUST00000129292, ENSMUST00000134539, ENSMUST00000136389, ENSMUST00000138099, ENSMUST00000142175
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
13506750Tbthq2_mtrabecular bone thickness QTL 2 (mouse)76565974877549748Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
13513914Heal52_mwound healing/ regeneration 52 (mouse)77355037278591455Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse

Markers in Region
D7Mit147  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38774,359,380 - 74,359,462UniSTSGRCm38
MGSCv37781,504,266 - 81,504,348UniSTSGRCm37
Celera771,805,745 - 71,805,835UniSTS
Cytogenetic Map7D1UniSTS
cM Map737.0UniSTS
Whitehead Genetic728.4UniSTS
Whitehead/MRC_RH7817.09UniSTS
Whitehead_YAC7 UniSTS
D7Mit201  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38774,321,745 - 74,321,894UniSTSGRCm38
MGSCv37781,466,631 - 81,466,780UniSTSGRCm37
Celera771,769,115 - 71,769,254UniSTS
Cytogenetic Map7D1UniSTS
cM Map737.0UniSTS
Whitehead Genetic728.4UniSTS
31.MMHAP61FRC10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38774,310,990 - 74,311,189UniSTSGRCm38
MGSCv37781,455,876 - 81,456,075UniSTSGRCm37
Celera771,758,291 - 71,758,490UniSTS
Cytogenetic Map7D1UniSTS
Whitehead/MRC_RH7817.09UniSTS
RH125163  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38774,275,650 - 74,275,903UniSTSGRCm38
MGSCv37781,420,536 - 81,420,789UniSTSGRCm37
Celera771,722,531 - 71,722,784UniSTS
Cytogenetic Map7D1UniSTS
UniSTS:235691  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38774,276,419 - 74,276,720UniSTSGRCm38
MGSCv37781,421,305 - 81,421,606UniSTSGRCm37
Celera771,723,300 - 71,723,601UniSTS
Cytogenetic Map7D1UniSTS
SLC21A11_1798  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38774,283,808 - 74,284,576UniSTSGRCm38
MGSCv37781,428,694 - 81,429,462UniSTSGRCm37
Celera771,731,079 - 71,731,848UniSTS
Cytogenetic Map7D1UniSTS
Slco3a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7D1UniSTS
cM Map742.95UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001038643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF226324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000026897   ⟹   ENSMUSP00000026897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl773,931,606 - 74,204,362 (-)Ensembl
GRCm38.p6 Ensembl774,281,858 - 74,554,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098371   ⟹   ENSMUSP00000095973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl773,925,167 - 74,204,381 (-)Ensembl
GRCm38.p6 Ensembl774,275,419 - 74,554,633 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107453   ⟹   ENSMUSP00000103077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl773,945,119 - 74,204,528 (-)Ensembl
GRCm38.p6 Ensembl774,295,371 - 74,554,780 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl774,154,134 - 74,179,857 (-)Ensembl
GRCm38.p6 Ensembl774,504,386 - 74,530,109 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134539   ⟹   ENSMUSP00000116946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl773,996,534 - 74,204,222 (-)Ensembl
GRCm38.p6 Ensembl774,346,786 - 74,554,474 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl774,009,402 - 74,154,083 (-)Ensembl
GRCm38.p6 Ensembl774,359,654 - 74,504,335 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138099   ⟹   ENSMUSP00000115279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl774,153,987 - 74,202,342 (-)Ensembl
GRCm38.p6 Ensembl774,504,239 - 74,552,594 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl773,980,756 - 73,996,979 (-)Ensembl
GRCm38.p6 Ensembl774,331,008 - 74,347,231 (-)Ensembl
RefSeq Acc Id: NM_001038643   ⟹   NP_001033732
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39773,925,166 - 74,204,528 (-)NCBI
GRCm38774,275,418 - 74,554,780 (-)ENTREZGENE
MGSCv37781,420,304 - 81,699,666 (-)RGD
Celera771,722,299 - 72,002,017 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023908   ⟹   NP_076397
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39773,931,664 - 74,204,528 (-)NCBI
GRCm38774,281,916 - 74,554,780 (-)NCBI
MGSCv37781,420,304 - 81,699,666 (-)RGD
Celera771,722,299 - 72,002,017 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001033732   ⟸   NM_001038643
- Peptide Label: isoform 2
- UniProtKB: D3YXA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_076397   ⟸   NM_023908
- Peptide Label: isoform 1
- UniProtKB: Q9CTV3 (UniProtKB/Swiss-Prot),   Q544H3 (UniProtKB/Swiss-Prot),   Q505P2 (UniProtKB/Swiss-Prot),   Q3U7W0 (UniProtKB/Swiss-Prot),   Q3TLX2 (UniProtKB/Swiss-Prot),   Q9JKV0 (UniProtKB/Swiss-Prot),   Q8R3L5 (UniProtKB/Swiss-Prot),   D3YXA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000026897   ⟸   ENSMUST00000026897
RefSeq Acc Id: ENSMUSP00000115279   ⟸   ENSMUST00000138099
RefSeq Acc Id: ENSMUSP00000103077   ⟸   ENSMUST00000107453
RefSeq Acc Id: ENSMUSP00000116946   ⟸   ENSMUST00000134539
RefSeq Acc Id: ENSMUSP00000095973   ⟸   ENSMUST00000098371
Protein Domains
Kazal-like   Major facilitator superfamily (MFS) profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R3L5-F1-model_v2 AlphaFold Q8R3L5 1-710 view protein structure

Promoters
RGD ID:8664443
Promoter ID:EPDNEW_M10252
Type:initiation region
Name:Slco3a1_1
Description:Mus musculus solute carrier organic anion transporter family,member 3a1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38774,554,746 - 74,554,806EPDNEW
RGD ID:6842066
Promoter ID:MM_KWN:51168
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000059545
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36781,491,836 - 81,492,487 (-)MPROMDB
RGD ID:6842069
Promoter ID:MM_KWN:51170
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000059546
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36781,649,091 - 81,649,591 (-)MPROMDB
RGD ID:6842067
Promoter ID:MM_KWN:51171
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000059528
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36781,674,536 - 81,675,437 (-)MPROMDB
RGD ID:6842071
Promoter ID:MM_KWN:51173
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000059527
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36781,697,036 - 81,698,097 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351867 AgrOrtholog
Ensembl Genes ENSMUSG00000025790 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026897 ENTREZGENE
  ENSMUST00000026897.14 UniProtKB/Swiss-Prot
  ENSMUST00000098371 ENTREZGENE
  ENSMUST00000098371.9 UniProtKB/Swiss-Prot
  ENSMUST00000107453.8 UniProtKB/TrEMBL
  ENSMUST00000134539.2 UniProtKB/TrEMBL
  ENSMUST00000138099.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kazal_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:108116 UniProtKB/Swiss-Prot
MGD MGI:1351867 ENTREZGENE
NCBI Gene 108116 ENTREZGENE
PANTHER PTHR11388 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 3A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Kazal_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slco3a1 PhenoGen
PROSITE KAZAL_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YUC4_MOUSE UniProtKB/TrEMBL
  D3YXA8 ENTREZGENE, UniProtKB/TrEMBL
  F7B851_MOUSE UniProtKB/TrEMBL
  Q3TLX2 ENTREZGENE
  Q3U7W0 ENTREZGENE
  Q505P2 ENTREZGENE
  Q544H3 ENTREZGENE
  Q8BU79_MOUSE UniProtKB/TrEMBL
  Q8R3L5 ENTREZGENE
  Q9CTV3 ENTREZGENE
  Q9JKV0 ENTREZGENE
  SO3A1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TLX2 UniProtKB/Swiss-Prot
  Q3U7W0 UniProtKB/Swiss-Prot
  Q505P2 UniProtKB/Swiss-Prot
  Q544H3 UniProtKB/Swiss-Prot
  Q9CTV3 UniProtKB/Swiss-Prot
  Q9JKV0 UniProtKB/Swiss-Prot