Nop58 (NOP58 ribonucleoprotein) - Rat Genome Database

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Gene: Nop58 (NOP58 ribonucleoprotein) Mus musculus
Analyze
Symbol: Nop58
Name: NOP58 ribonucleoprotein
RGD ID: 733463
MGI Page MGI
Description: Predicted to enable ATPase binding activity; TFIID-class transcription factor complex binding activity; and snoRNA binding activity. Predicted to be involved in snoRNA localization. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in Cajal body; cytosol; and fibrillar center. Predicted to be part of box C/D RNP complex; pre-snoRNP complex; and small-subunit processome. Is expressed in brain; embryo; eye; heart; and pancreas epithelium. Orthologous to human NOP58 (NOP58 ribonucleoprotein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: M; MGC105209; MSSP; N; Nol5; nop5; NOP58 ribonucleoprotein homolog; nucleolar protein 5; nucleolar protein 58; SIK; SIK similar protein; SIK-similar protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,724,134 - 59,750,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,724,130 - 59,758,203 (+)EnsemblGRCm39 Ensembl
GRCm38159,684,961 - 59,711,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,684,971 - 59,719,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv37159,741,850 - 59,768,354 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,629,645 - 59,656,054 (+)NCBIMGSCv36mm8
Celera160,199,706 - 60,226,206 (+)NCBICelera
Cytogenetic Map1C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
casticin  (EXP)
chloropicrin  (ISO)
chloroprene  (ISO)
chromium(6+)  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
fluoranthene  (EXP)
flutamide  (ISO)
folic acid  (EXP)
furan  (EXP)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
hydroxyurea  (EXP)
indole-3-methanol  (ISO)
ivermectin  (ISO)
menadione  (ISO)
mercury dichloride  (ISO)
metformin  (ISO)
methidathion  (EXP)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
ozone  (EXP)
p-anisidine  (EXP)
paclitaxel  (EXP)
paracetamol  (EXP)
paraquat  (ISO)
PCB138  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phorone  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrimidifen  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenate  (EXP)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
Tributyltin oxide  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. Watkins NJ and Bohnsack MT, Wiley Interdiscip Rev RNA. 2012 May-Jun;3(3):397-414. doi: 10.1002/wrna.117. Epub 2011 Nov 7.
7. Conserved composition of mammalian box H/ACA and box C/D small nucleolar ribonucleoprotein particles and their interaction with the common factor Nopp140. Yang Y, etal., Mol Biol Cell 2000 Feb;11(2):567-77.
Additional References at PubMed
PMID:10209036   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17540781   PMID:17967808   PMID:18554416   PMID:18799693   PMID:21873635   PMID:22282469   PMID:24457600   PMID:26167872   PMID:26336360   PMID:26919559   PMID:28378742  
PMID:30457570   PMID:30595499   PMID:31077711   PMID:32017896   PMID:32325033   PMID:34133714  


Genomics

Comparative Map Data
Nop58
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,724,134 - 59,750,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,724,130 - 59,758,203 (+)EnsemblGRCm39 Ensembl
GRCm38159,684,961 - 59,711,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,684,971 - 59,719,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv37159,741,850 - 59,768,354 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,629,645 - 59,656,054 (+)NCBIMGSCv36mm8
Celera160,199,706 - 60,226,206 (+)NCBICelera
Cytogenetic Map1C2NCBI
NOP58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,265,763 - 202,303,661 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2202,265,736 - 202,303,661 (+)EnsemblGRCh38hg38GRCh38
GRCh372203,130,486 - 203,168,384 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362202,838,760 - 202,876,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 342202,956,020 - 202,993,888NCBI
Celera2196,882,417 - 196,920,291 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2194,979,023 - 195,015,805 (+)NCBIHuRef
CHM1_12203,136,987 - 203,174,808 (+)NCBICHM1_1
T2T-CHM13v2.02202,746,796 - 202,784,682 (+)NCBIT2T-CHM13v2.0
Nop58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2961,120,939 - 61,144,810 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,120,929 - 61,144,810 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx969,615,623 - 69,639,722 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0974,731,599 - 74,755,698 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0973,049,892 - 73,073,989 (+)NCBIRnor_WKY
Rnor_6.0966,495,881 - 66,520,521 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,495,832 - 66,519,788 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,300,036 - 66,323,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,255,685 - 58,279,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,402,666 - 58,426,502 (+)NCBI
Celera958,555,582 - 58,579,638 (+)NCBICelera
Cytogenetic Map9q31NCBI
Nop58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545712,479,965 - 12,511,678 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545712,481,467 - 12,511,678 (-)NCBIChiLan1.0ChiLan1.0
NOP58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B207,674,433 - 207,707,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B207,674,654 - 207,707,763 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B89,520,961 - 89,558,794 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NOP58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,255,562 - 11,287,325 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,255,589 - 11,287,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,138,970 - 12,170,731 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03711,191,615 - 11,223,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,191,646 - 11,223,757 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,142,546 - 11,173,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,121,045 - 11,152,921 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,114,468 - 11,146,228 (+)NCBIUU_Cfam_GSD_1.0
Nop58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,486,721 - 159,517,681 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,457,002 - 1,486,530 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367261,457,038 - 1,487,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOP58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15105,893,637 - 105,930,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115105,893,589 - 105,930,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,351,116 - 117,380,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOP58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11087,989,687 - 88,026,774 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1087,989,699 - 88,026,904 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040111,362,208 - 111,399,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nop58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476514,139,815 - 14,172,413 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:86
Interacting mature miRNAs:90
Transcripts:ENSMUST00000027174
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
4141724Idd5.1_minsulin dependent diabetes susceptibility 5.1 (mouse)Not determined5772827662946882Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse

Markers in Region
04.MHAa63a4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38159,689,844 - 59,689,944UniSTSGRCm38
MGSCv37159,746,688 - 59,746,788UniSTSGRCm37
Celera160,204,544 - 60,204,644UniSTS
Cytogenetic Map1C1.3UniSTS
Whitehead_YAC1 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000027174   ⟹   ENSMUSP00000027174
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,136 - 59,750,669 (+)Ensembl
GRCm38.p6 Ensembl159,684,977 - 59,711,510 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,731,603 - 59,743,368 (+)Ensembl
GRCm38.p6 Ensembl159,692,444 - 59,704,209 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185772   ⟹   ENSMUSP00000139474
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,180 - 59,735,211 (+)Ensembl
GRCm38.p6 Ensembl159,685,021 - 59,696,052 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186044
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,165 - 59,730,148 (+)Ensembl
GRCm38.p6 Ensembl159,685,006 - 59,690,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187491   ⟹   ENSMUSP00000140053
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,743,318 - 59,748,258 (+)Ensembl
GRCm38.p6 Ensembl159,704,159 - 59,709,099 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187837   ⟹   ENSMUSP00000140038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,743,357 - 59,750,438 (+)Ensembl
GRCm38.p6 Ensembl159,704,198 - 59,711,279 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188390   ⟹   ENSMUSP00000139568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,743,868 - 59,750,439 (+)Ensembl
GRCm38.p6 Ensembl159,704,709 - 59,711,280 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189289
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,162 - 59,731,847 (+)Ensembl
GRCm38.p6 Ensembl159,685,003 - 59,692,688 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189327   ⟹   ENSMUSP00000139517
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,213 - 59,737,581 (+)Ensembl
GRCm38.p6 Ensembl159,685,054 - 59,698,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189919   ⟹   ENSMUSP00000141192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,735,186 - 59,743,320 (+)Ensembl
GRCm38.p6 Ensembl159,696,027 - 59,704,161 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190231   ⟹   ENSMUSP00000140581
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,144 - 59,735,236 (+)Ensembl
GRCm38.p6 Ensembl159,684,985 - 59,696,077 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190265   ⟹   ENSMUSP00000141100
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,737,575 - 59,746,223 (+)Ensembl
GRCm38.p6 Ensembl159,698,416 - 59,707,064 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,729,338 - 59,737,545 (+)Ensembl
GRCm38.p6 Ensembl159,690,179 - 59,698,386 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191088
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,130 - 59,731,825 (+)Ensembl
GRCm38.p6 Ensembl159,684,971 - 59,692,666 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191142   ⟹   ENSMUSP00000140250
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl159,724,168 - 59,758,203 (+)Ensembl
GRCm38.p6 Ensembl159,685,009 - 59,719,044 (+)Ensembl
RefSeq Acc Id: NM_018868   ⟹   NP_061356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,724,165 - 59,750,669 (+)NCBI
GRCm38159,685,006 - 59,711,510 (+)NCBI
MGSCv37159,741,850 - 59,768,354 (+)RGD
Celera160,199,706 - 60,226,206 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496149   ⟹   XP_006496212
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,724,134 - 59,750,669 (+)NCBI
GRCm38159,684,961 - 59,711,510 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152470   ⟹   XP_036008363
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,724,147 - 59,750,669 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_061356   ⟸   NM_018868
- UniProtKB: Q8C8Y7 (UniProtKB/Swiss-Prot),   Q6DFW4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496212   ⟸   XM_006496149
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000027174   ⟸   ENSMUST00000027174
RefSeq Acc Id: ENSMUSP00000140250   ⟸   ENSMUST00000191142
RefSeq Acc Id: ENSMUSP00000139474   ⟸   ENSMUST00000185772
RefSeq Acc Id: ENSMUSP00000141100   ⟸   ENSMUST00000190265
RefSeq Acc Id: ENSMUSP00000140581   ⟸   ENSMUST00000190231
RefSeq Acc Id: ENSMUSP00000139568   ⟸   ENSMUST00000188390
RefSeq Acc Id: ENSMUSP00000140038   ⟸   ENSMUST00000187837
RefSeq Acc Id: ENSMUSP00000140053   ⟸   ENSMUST00000187491
RefSeq Acc Id: ENSMUSP00000141192   ⟸   ENSMUST00000189919
RefSeq Acc Id: ENSMUSP00000139517   ⟸   ENSMUST00000189327
RefSeq Acc Id: XP_036008363   ⟸   XM_036152470
- Peptide Label: isoform X1
Protein Domains
Nop   NOP5NT   NOSIC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6DFW4-F1-model_v2 AlphaFold Q6DFW4 1-536 view protein structure

Promoters
RGD ID:6873850
Promoter ID:EPDNEW_M376
Type:initiation region
Name:Nop58_1
Description:Mus musculus NOP58 ribonucleoprotein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38159,684,988 - 59,685,048EPDNEW
RGD ID:6818174
Promoter ID:MM_KWN:881
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000027174
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36159,741,666 - 59,742,166 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933184 AgrOrtholog
Ensembl Genes ENSMUSG00000026020 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000027174.5 UniProtKB/TrEMBL
  ENSMUSP00000139474.2 UniProtKB/TrEMBL
  ENSMUSP00000139517.2 UniProtKB/TrEMBL
  ENSMUSP00000139568.2 UniProtKB/TrEMBL
  ENSMUSP00000140038.2 UniProtKB/TrEMBL
  ENSMUSP00000140053.2 UniProtKB/TrEMBL
  ENSMUSP00000140250 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140581.2 UniProtKB/TrEMBL
  ENSMUSP00000141100.2 UniProtKB/TrEMBL
  ENSMUSP00000141192.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027174.10 UniProtKB/TrEMBL
  ENSMUST00000185772.7 UniProtKB/TrEMBL
  ENSMUST00000187491.2 UniProtKB/TrEMBL
  ENSMUST00000187837.7 UniProtKB/TrEMBL
  ENSMUST00000188390.2 UniProtKB/TrEMBL
  ENSMUST00000189327.7 UniProtKB/TrEMBL
  ENSMUST00000189919.7 UniProtKB/TrEMBL
  ENSMUST00000190231.7 UniProtKB/TrEMBL
  ENSMUST00000190265.7 UniProtKB/TrEMBL
  ENSMUST00000191142 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.246.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nop56/Nop58 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOP5_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nop_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nop_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nop_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOSIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:55989 UniProtKB/Swiss-Prot
MGD MGI:1933184 ENTREZGENE
NCBI Gene 55989 ENTREZGENE
PANTHER PTHR10894 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOP5NT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nop58 PhenoGen
PROSITE NOP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART NOSIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF89124 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WNS6_MOUSE UniProtKB/TrEMBL
  A0A087WNW0_MOUSE UniProtKB/TrEMBL
  A0A087WP00_MOUSE UniProtKB/TrEMBL
  A0A087WQ46_MOUSE UniProtKB/TrEMBL
  A0A087WQ59_MOUSE UniProtKB/TrEMBL
  A0A087WRD9_MOUSE UniProtKB/TrEMBL
  A0A087WSL8_MOUSE UniProtKB/TrEMBL
  A0A087WSU5_MOUSE UniProtKB/TrEMBL
  A0A0A0MQ76_MOUSE UniProtKB/TrEMBL
  NOP58_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8C8Y7 ENTREZGENE
UniProt Secondary O70396 UniProtKB/Swiss-Prot
  Q3UYX9 UniProtKB/Swiss-Prot
  Q3UZA3 UniProtKB/Swiss-Prot
  Q8C8Y7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Nop58  NOP58 ribonucleoprotein    NOP58 ribonucleoprotein homolog (yeast)  Symbol and/or name change 5135510 APPROVED