Cmklr1 (chemerin chemokine-like receptor 1) - Rat Genome Database

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Gene: Cmklr1 (chemerin chemokine-like receptor 1) Mus musculus
Analyze
Symbol: Cmklr1
Name: chemerin chemokine-like receptor 1
RGD ID: 733439
MGI Page MGI
Description: Predicted to enable adipokinetic hormone binding activity; adipokinetic hormone receptor activity; and transmembrane signaling receptor activity. Involved in negative regulation of interleukin-12 production; positive regulation of cold-induced thermogenesis; and positive regulation of fat cell differentiation. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; embryo mesenchyme; jaw; lung; and uterus. Orthologous to human CMKLR1 (chemerin chemokine-like receptor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chemerin receptor; chemerin-like receptor 1; chemokine receptor-like 1; chemokine-like receptor 1; ChemR2; ChemR23; DEZ; G-protein coupled receptor 27; G-protein coupled receptor DEZ; Gpcr; Gpcr27; mcmklr1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,750,415 - 113,792,971 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,750,415 - 113,788,487 (-)EnsemblGRCm39 Ensembl
GRCm385113,612,355 - 113,650,475 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,612,354 - 113,650,426 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,062,364 - 114,100,399 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,873,360 - 113,911,389 (-)NCBIMGSCv36mm8
Celera5110,714,182 - 110,752,271 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9144535   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15019996   PMID:15753205   PMID:15792532   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16863918   PMID:17635925   PMID:17967808   PMID:18391062   PMID:18799693   PMID:19446731   PMID:19841182   PMID:19864606   PMID:19929432   PMID:19996735  
PMID:20363975   PMID:20720202   PMID:21267068   PMID:21430224   PMID:21752353   PMID:21873635   PMID:22072972   PMID:22186410   PMID:22460713   PMID:22768214   PMID:23053848   PMID:23469143  
PMID:23999103   PMID:24084834   PMID:24470498   PMID:24659779   PMID:24781986   PMID:24881877   PMID:25079809   PMID:25224322   PMID:25437209   PMID:25539827   PMID:25659101   PMID:26893072  
PMID:26972253   PMID:27733019   PMID:27792688   PMID:28326537   PMID:28905319   PMID:29556954   PMID:29688375   PMID:29739755   PMID:30576947   PMID:30597013   PMID:30722991   PMID:30784180  
PMID:30786742   PMID:31063220   PMID:31803622   PMID:31910029   PMID:32506925   PMID:32579292   PMID:32801154   PMID:33144092   PMID:34321999   PMID:34330814   PMID:34524600   PMID:34638484  
PMID:35656551   PMID:35858331   PMID:36012305   PMID:36446229   PMID:36467705   PMID:36513282   PMID:36883565   PMID:37635479   PMID:37686333   PMID:37800344   PMID:38178174  


Genomics

Comparative Map Data
Cmklr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,750,415 - 113,792,971 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,750,415 - 113,788,487 (-)EnsemblGRCm39 Ensembl
GRCm385113,612,355 - 113,650,475 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,612,354 - 113,650,426 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,062,364 - 114,100,399 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,873,360 - 113,911,389 (-)NCBIMGSCv36mm8
Celera5110,714,182 - 110,752,271 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.55NCBI
CMKLR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812108,288,046 - 108,339,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12108,288,044 - 108,339,317 (-)EnsemblGRCh38hg38GRCh38
GRCh3712108,681,823 - 108,733,088 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,209,477 - 107,257,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412107,187,813 - 107,235,553NCBI
Celera12108,351,249 - 108,402,507 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12105,746,498 - 105,797,979 (-)NCBIHuRef
CHM1_112108,647,879 - 108,699,141 (-)NCBICHM1_1
T2T-CHM13v2.012108,256,268 - 108,307,509 (-)NCBIT2T-CHM13v2.0
Cmklr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,634,929 - 48,687,833 (+)NCBIGRCr8
mRatBN7.21242,974,462 - 43,027,321 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,974,410 - 43,028,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,186,820 - 44,191,095 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,800,395 - 44,804,670 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,860,934 - 43,865,209 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,743,556 - 48,796,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,789,261 - 48,793,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,531,209 - 50,584,406 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41244,056,527 - 44,061,043 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11243,921,991 - 43,923,110 (+)NCBI
Celera1244,621,019 - 44,625,349 (+)NCBICelera
Cytogenetic Map12q16NCBI
Cmklr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554559,589,822 - 9,590,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554559,587,421 - 9,638,602 (-)NCBIChiLan1.0ChiLan1.0
CMKLR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210116,348,281 - 116,399,621 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112116,347,528 - 116,395,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012105,859,702 - 105,911,010 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112109,256,329 - 109,307,526 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12109,260,130 - 109,261,271 (-)Ensemblpanpan1.1panPan2
CMKLR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12618,487,700 - 18,539,678 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2618,532,479 - 18,533,576 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,254,935 - 17,309,701 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02618,836,295 - 18,888,040 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,836,443 - 18,884,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12617,467,315 - 17,495,005 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,824,230 - 18,875,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,845,535 - 18,897,317 (+)NCBIUU_Cfam_GSD_1.0
Cmklr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,171,728 - 145,175,406 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936769302,391 - 304,166 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMKLR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,420,177 - 42,468,058 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,420,166 - 42,468,080 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,964,240 - 44,977,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21445,116,776 - 45,118,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q21.1NCBI
CMKLR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111103,484,422 - 103,536,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037141,555,941 - 141,609,279 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmklr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474711,553,268 - 11,601,105 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cmklr1
1401 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:952
Count of miRNA genes:567
Interacting mature miRNAs:667
Transcripts:ENSMUST00000047936, ENSMUST00000132065, ENSMUST00000142854, ENSMUST00000151460
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141652Mrdq2_mmodifier of retinal degeneration QTL 2 (mouse)Not determined110253106118093673Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse

Markers in Region
U79525  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,613,384 - 113,613,489UniSTSGRCm38
MGSCv375114,063,393 - 114,063,498UniSTSGRCm37
Celera5110,715,245 - 110,715,350UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51367.51UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC241893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY681348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY347978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ072893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U79525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047936   ⟹   ENSMUSP00000036316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,750,415 - 113,788,487 (-)Ensembl
GRCm38.p6 Ensembl5113,612,354 - 113,650,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132065   ⟹   ENSMUSP00000121765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,752,097 - 113,765,676 (-)Ensembl
GRCm38.p6 Ensembl5113,614,036 - 113,627,615 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142854   ⟹   ENSMUSP00000115784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,752,988 - 113,781,664 (-)Ensembl
GRCm38.p6 Ensembl5113,614,927 - 113,643,603 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,769,367 - 113,788,457 (-)Ensembl
GRCm38.p6 Ensembl5113,631,306 - 113,650,396 (-)Ensembl
RefSeq Acc Id: NM_001359060   ⟹   NP_001345989
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,750,416 - 113,781,664 (-)NCBI
GRCm385113,612,355 - 113,643,603 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008153   ⟹   NP_032179
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,750,416 - 113,788,451 (-)NCBI
GRCm385113,612,355 - 113,650,390 (-)NCBI
MGSCv375114,062,364 - 114,100,399 (-)RGD
Celera5110,714,182 - 110,752,271 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530164   ⟹   XP_006530227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,750,415 - 113,788,560 (-)NCBI
GRCm385113,613,581 - 113,650,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530165   ⟹   XP_006530228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,750,415 - 113,765,497 (-)NCBI
GRCm385113,613,581 - 113,627,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530166   ⟹   XP_006530229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,750,415 - 113,765,689 (-)NCBI
GRCm385113,613,581 - 113,627,610 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164795   ⟹   XP_036020688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,750,415 - 113,792,971 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_032179   ⟸   NM_008153
- UniProtKB: P97468 (UniProtKB/Swiss-Prot),   Q497D3 (UniProtKB/TrEMBL),   E9Q8N2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530227   ⟸   XM_006530164
- Peptide Label: isoform X1
- UniProtKB: P97468 (UniProtKB/Swiss-Prot),   Q497D3 (UniProtKB/TrEMBL),   E9Q8N2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530229   ⟸   XM_006530166
- Peptide Label: isoform X1
- UniProtKB: P97468 (UniProtKB/Swiss-Prot),   Q497D3 (UniProtKB/TrEMBL),   E9Q8N2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530228   ⟸   XM_006530165
- Peptide Label: isoform X1
- UniProtKB: P97468 (UniProtKB/Swiss-Prot),   Q497D3 (UniProtKB/TrEMBL),   E9Q8N2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345989   ⟸   NM_001359060
- UniProtKB: P97468 (UniProtKB/Swiss-Prot),   Q497D3 (UniProtKB/TrEMBL),   E9Q8N2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000121765   ⟸   ENSMUST00000132065
RefSeq Acc Id: ENSMUSP00000036316   ⟸   ENSMUST00000047936
RefSeq Acc Id: ENSMUSP00000115784   ⟸   ENSMUST00000142854
RefSeq Acc Id: XP_036020688   ⟸   XM_036164795
- Peptide Label: isoform X1
- UniProtKB: P97468 (UniProtKB/Swiss-Prot),   Q497D3 (UniProtKB/TrEMBL),   E9Q8N2 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97468-F1-model_v2 AlphaFold P97468 1-371 view protein structure

Promoters
RGD ID:6887634
Promoter ID:EPDNEW_M7268
Type:initiation region
Name:Cmklr1_1
Description:Mus musculus chemokine-like receptor 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385113,650,426 - 113,650,486EPDNEW
RGD ID:6837272
Promoter ID:MM_KWN:43509
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   MEF_B6
Transcripts:OTTMUST00000063593
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365114,077,909 - 114,078,409 (-)MPROMDB
RGD ID:6837273
Promoter ID:MM_KWN:43510
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney
Transcripts:OTTMUST00000063595
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365114,093,406 - 114,094,607 (-)MPROMDB
RGD ID:6837277
Promoter ID:MM_KWN:43512
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000063592,   OTTMUST00000063594,   UC008YYJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365114,100,314 - 114,100,814 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109603 AgrOrtholog
Ensembl Genes ENSMUSG00000042190 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047936 ENTREZGENE
  ENSMUST00000047936.13 UniProtKB/Swiss-Prot
  ENSMUST00000132065 ENTREZGENE
  ENSMUST00000132065.8 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chemokine-like_recpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Formyl_rcpt-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14747 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109603 ENTREZGENE
NCBI Gene 14747 ENTREZGENE
PANTHER PTHR24225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24225:SF49 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cmklr1 PhenoGen
PRINTS DEZORPHANR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CML1_MOUSE UniProtKB/Swiss-Prot
  E9Q8N2 ENTREZGENE, UniProtKB/TrEMBL
  P97468 ENTREZGENE
  Q3TYR0_MOUSE UniProtKB/TrEMBL
  Q497D3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-27 Cmklr1  chemerin chemokine-like receptor 1  Cmklr1  chemokine-like receptor 1  Symbol and/or name change 5135510 APPROVED