Neo1 (neogenin) - Rat Genome Database
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Gene: Neo1 (neogenin) Mus musculus
Analyze
Symbol: Neo1
Name: neogenin
RGD ID: 733425
MGI Page MGI
Description: Exhibits BMP receptor binding activity; cadherin binding activity; and signaling receptor activity. Involved in several processes, including generation of neurons; myoblast fusion; and positive regulation of BMP signaling pathway. Localizes to cell surface; intracellular vesicle; and membrane. Is expressed in several structures, including alimentary system; genitourinary system; limb; nervous system; and sensory organ. Orthologous to human NEO1 (neogenin 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2610028H22Rik; AI327052; D930014N22Rik; Igdcc; Igdcc2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,781,962 - 58,943,926 (-)NCBIGRCm39mm39
GRCm38958,874,679 - 59,036,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,874,687 - 59,036,441 (-)EnsemblGRCm38mm10GRCm38
MGSCv37958,722,486 - 58,884,248 (-)NCBIGRCm37mm9NCBIm37
MGSCv36958,674,677 - 58,834,445 (-)NCBImm8
Celera956,103,366 - 56,261,719 (-)NCBICelera
Cytogenetic Map9BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:9264410   PMID:9441666   PMID:10341242   PMID:10349636   PMID:10704383   PMID:10708514   PMID:10843775   PMID:10908620   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11242070   PMID:11431694   PMID:12351186   PMID:12477932   PMID:12520002   PMID:12636918   PMID:12798294   PMID:12889066   PMID:12904583   PMID:14534138   PMID:14610273   PMID:14681479  
PMID:15186747   PMID:15258590   PMID:15494733   PMID:15520228   PMID:15632069   PMID:16032658   PMID:16141072   PMID:16141073   PMID:16284245   PMID:16552762   PMID:16602821   PMID:16707424  
PMID:16723533   PMID:16908105   PMID:17237772   PMID:17389603   PMID:17452454   PMID:17604699   PMID:17616930   PMID:17942375   PMID:18287559   PMID:18326817   PMID:18391016   PMID:18485097  
PMID:18719102   PMID:19812254   PMID:19944164   PMID:20065295   PMID:20575069   PMID:20643353   PMID:21059867   PMID:21267068   PMID:21467223   PMID:21945077   PMID:21947380   PMID:22198383  
PMID:22238077   PMID:22275192   PMID:22349703   PMID:22396795   PMID:22412855   PMID:22726835   PMID:23457482   PMID:23775842   PMID:24876346   PMID:24952961   PMID:25308084   PMID:25838543  
PMID:25938661   PMID:26257176   PMID:26273529   PMID:26395479   PMID:26397040   PMID:26633881   PMID:26651291   PMID:26659141   PMID:26858598   PMID:27072365   PMID:27143755   PMID:27223328  
PMID:27225772   PMID:27913301   PMID:28700939   PMID:29444422   PMID:30222138   PMID:30228230   PMID:31754028   PMID:32027825   PMID:32175920   PMID:32231305  


Genomics

Comparative Map Data
Neo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,781,962 - 58,943,926 (-)NCBIGRCm39mm39
GRCm38958,874,679 - 59,036,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,874,687 - 59,036,441 (-)EnsemblGRCm38mm10GRCm38
MGSCv37958,722,486 - 58,884,248 (-)NCBIGRCm37mm9NCBIm37
MGSCv36958,674,677 - 58,834,445 (-)NCBImm8
Celera956,103,366 - 56,261,719 (-)NCBICelera
Cytogenetic Map9BNCBI
NEO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1573,051,710 - 73,305,205 (+)EnsemblGRCh38hg38GRCh38
GRCh381573,051,715 - 73,305,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371573,344,056 - 73,597,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361571,131,928 - 71,384,599 (+)NCBINCBI36hg18NCBI36
Build 341571,131,927 - 71,382,835NCBI
Celera1550,287,439 - 50,476,112 (+)NCBI
Cytogenetic Map15q24.1NCBI
HuRef1550,240,408 - 50,428,957 (+)NCBIHuRef
CHM1_11573,462,785 - 73,715,509 (+)NCBICHM1_1
Neo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0863,649,871 - 63,756,394 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,653,266 - 63,750,531 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0863,417,857 - 63,524,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,681,481 - 62,789,841 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1862,702,413 - 62,806,918 (-)NCBI
Celera858,729,882 - 58,837,487 (-)NCBICelera
Cytogenetic Map8q24NCBI
Neo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,191,168 - 4,375,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,191,168 - 4,324,997 (-)NCBIChiLan1.0ChiLan1.0
NEO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11570,680,970 - 70,979,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01551,968,238 - 52,221,116 (+)NCBIMhudiblu_PPA_v0panPan3
NEO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3036,387,259 - 36,622,154 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13036,387,425 - 36,622,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Neo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647132,345,578 - 32,517,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,064,994 - 60,300,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,064,984 - 60,299,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,688,218 - 64,785,685 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEO1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12610,173,707 - 10,427,732 (-)NCBI
ChlSab1.1 Ensembl2610,176,215 - 10,427,675 (-)Ensembl
Neo1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247811,021,460 - 1,227,680 (-)NCBI

Position Markers
Neo1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
BB243938  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38958,912,068 - 58,912,215UniSTSGRCm38
MGSCv37958,759,875 - 58,760,022UniSTSGRCm37
Celera956,140,461 - 56,140,608UniSTS
Cytogenetic Map9BUniSTS
Whitehead/MRC_RH9588.16UniSTS
RH129374  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38958,876,591 - 58,876,804UniSTSGRCm38
MGSCv37958,724,398 - 58,724,611UniSTSGRCm37
Celera956,105,278 - 56,105,491UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map10C2UniSTS
UniSTS:236148  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38958,876,837 - 58,877,088UniSTSGRCm38
MGSCv37958,724,644 - 58,724,895UniSTSGRCm37
Celera956,105,524 - 56,105,775UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map10C2UniSTS
RH135625  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38958,876,573 - 58,876,832UniSTSGRCm38
MGSCv37958,724,380 - 58,724,639UniSTSGRCm37
Celera956,105,260 - 56,105,519UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
cM Map9 UniSTS
AI327052  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38958,876,657 - 58,876,770UniSTSGRCm38
MGSCv37958,724,464 - 58,724,577UniSTSGRCm37
Celera956,105,344 - 56,105,457UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Whitehead/MRC_RH9589.73UniSTS
Neo1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
Neo1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
Neo1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
Neo1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92567618959676285Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92567618959676285Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92567618959676285Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92567618959676285Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92688512460885255Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92688512460885255Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92688512460885255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92733989761340026Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92938163163381774Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92938163163381774Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93014186664141979Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93082861764828723Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93252326366523557Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93254112166541246Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93259987266600121Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93297840266978536Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4668637365923895Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94950899863332570Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94950899867244166Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95251479868648726Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95760000063300000Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95768420965923895Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95789776471574472Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95887703568648726Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:838
Count of miRNA genes:535
Interacting mature miRNAs:609
Transcripts:ENSMUST00000068664
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF539503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ104177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN457663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR516798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT033754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y09535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000068664   ⟹   ENSMUSP00000063656
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl958,874,687 - 59,036,441 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214547   ⟹   ENSMUSP00000150600
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl958,876,555 - 59,036,425 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl958,912,836 - 58,982,108 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215165
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl958,888,486 - 58,893,934 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216964   ⟹   ENSMUSP00000149424
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl958,918,612 - 58,982,229 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl958,912,299 - 59,036,427 (-)Ensembl
RefSeq Acc Id: NM_001042752   ⟹   NP_001036217
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,781,962 - 58,943,724 (-)NCBI
GRCm38958,874,679 - 59,036,441 (-)NCBI
MGSCv37958,722,486 - 58,884,248 (-)RGD
Celera956,103,366 - 56,261,719 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008684   ⟹   NP_032710
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,781,962 - 58,943,724 (-)NCBI
GRCm38958,874,679 - 59,036,441 (-)NCBI
MGSCv37958,722,486 - 58,884,248 (-)RGD
Celera956,103,366 - 56,261,719 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510842   ⟹   XP_006510905
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510843   ⟹   XP_006510906
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510844   ⟹   XP_006510907
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510845   ⟹   XP_006510908
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510846   ⟹   XP_006510909
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510847   ⟹   XP_006510910
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244107   ⟹   XP_030099967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244108   ⟹   XP_030099968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
GRCm38958,874,834 - 59,036,614 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154674   ⟹   XP_036010567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
RefSeq Acc Id: XM_036154675   ⟹   XP_036010568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
RefSeq Acc Id: XM_036154676   ⟹   XP_036010569
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
RefSeq Acc Id: XM_036154677   ⟹   XP_036010570
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
RefSeq Acc Id: XM_036154678   ⟹   XP_036010571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
RefSeq Acc Id: XM_036154679   ⟹   XP_036010572
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39958,782,117 - 58,943,926 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_032710   ⟸   NM_008684
- Peptide Label: isoform 1 precursor
- UniProtKB: E9QK04 (UniProtKB/TrEMBL),   Q7TQG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001036217   ⟸   NM_001042752
- Peptide Label: isoform 2 precursor
- UniProtKB: Q7TQG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510910   ⟸   XM_006510847
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006510909   ⟸   XM_006510846
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006510907   ⟸   XM_006510844
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006510905   ⟸   XM_006510842
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510908   ⟸   XM_006510845
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006510906   ⟸   XM_006510843
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099967   ⟸   XM_030244107
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099968   ⟸   XM_030244108
- Peptide Label: isoform X8
RefSeq Acc Id: ENSMUSP00000149424   ⟸   ENSMUST00000216964
RefSeq Acc Id: ENSMUSP00000063656   ⟸   ENSMUST00000068664
RefSeq Acc Id: ENSMUSP00000150600   ⟸   ENSMUST00000214547
RefSeq Acc Id: XP_036010572   ⟸   XM_036154679
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036010567   ⟸   XM_036154674
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036010571   ⟸   XM_036154678
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036010570   ⟸   XM_036154677
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036010569   ⟸   XM_036154676
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036010568   ⟸   XM_036154675
- Peptide Label: isoform X9
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Promoters
RGD ID:6844876
Promoter ID:MM_KWN:57600
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000068664,   ENSMUST00000114096,   ENSMUST00000114098,   NM_001042752,   UC009PXN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36958,883,856 - 58,884,932 (-)MPROMDB
RGD ID:8669830
Promoter ID:EPDNEW_M12944
Type:multiple initiation site
Name:Neo1_2
Description:Mus musculus neogenin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12945  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38959,036,215 - 59,036,275EPDNEW
RGD ID:8669828
Promoter ID:EPDNEW_M12945
Type:initiation region
Name:Neo1_1
Description:Mus musculus neogenin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12944  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38959,036,427 - 59,036,487EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1097159 AgrOrtholog
Ensembl Genes ENSMUSG00000032340 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063656 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000149424 UniProtKB/TrEMBL
  ENSMUSP00000150600 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000068664 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000214547 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000216964 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neogenin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neogenin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18007 UniProtKB/TrEMBL
MGD MGI:1097159 ENTREZGENE
NCBI Gene 18007 ENTREZGENE
PANTHER PTHR44170:SF14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neogenin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Neo1 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.42249 ENTREZGENE
UniProt A0A1L1SRD6_MOUSE UniProtKB/TrEMBL
  E9QK04 ENTREZGENE, UniProtKB/TrEMBL
  NEO1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TQG5 ENTREZGENE, UniProtKB/TrEMBL