Ccnl1 (cyclin L1) - Rat Genome Database

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Gene: Ccnl1 (cyclin L1) Mus musculus
Analyze
Symbol: Ccnl1
Name: cyclin L1
RGD ID: 733407
MGI Page MGI
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of RNA splicing and regulation of transcription by RNA polymerase II. Predicted to be located in nuclear speck. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex and transcription elongation factor complex. Predicted to be active in nucleus. Is expressed in head. Orthologous to human CCNL1 (cyclin L1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610030E23Rik; an; ania-6a; AU018493; Ccnl; cyclin ania-6a; cyclin-L; cyclin-L1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39365,853,333 - 65,869,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl365,853,572 - 65,865,670 (-)EnsemblGRCm39 Ensembl
GRCm38365,945,908 - 65,962,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl365,946,151 - 65,958,249 (-)EnsemblGRCm38mm10GRCm38
MGSCv37365,750,073 - 65,762,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36366,034,080 - 66,046,148 (-)NCBIMGSCv36mm8
Celera366,084,322 - 66,096,395 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
capsaicin  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chrysene  (EXP)
clozapine  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP)
dibutyl phthalate  (ISO)
doxorubicin  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
glucose  (EXP)
glyphosate  (ISO)
haloperidol  (ISO)
imidacloprid  (ISO)
leflunomide  (EXP,ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mono(2-ethyl-5-oxohexyl) phthalate  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
nefazodone  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
ranitidine  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP)
Soman  (ISO)
sulfadimethoxine  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thiabendazole  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2217177   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11683987   PMID:11683997   PMID:12477932   PMID:12807435   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:15799026   PMID:16141072   PMID:16141073   PMID:17261272   PMID:17494991   PMID:17516030   PMID:21677750   PMID:21873635   PMID:24436071   PMID:30550785   PMID:32325033  
PMID:32758484  


Genomics

Comparative Map Data
Ccnl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39365,853,333 - 65,869,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl365,853,572 - 65,865,670 (-)EnsemblGRCm39 Ensembl
GRCm38365,945,908 - 65,962,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl365,946,151 - 65,958,249 (-)EnsemblGRCm38mm10GRCm38
MGSCv37365,750,073 - 65,762,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36366,034,080 - 66,046,148 (-)NCBIMGSCv36mm8
Celera366,084,322 - 66,096,395 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.25NCBI
CCNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383157,143,121 - 157,160,147 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3157,146,508 - 157,160,760 (-)EnsemblGRCh38hg38GRCh38
GRCh373156,860,910 - 156,877,936 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363158,348,279 - 158,361,176 (-)NCBINCBI36Build 36hg18NCBI36
Build 343158,348,286 - 158,361,184NCBI
Celera3155,289,188 - 155,302,097 (-)NCBICelera
Cytogenetic Map3q25.31NCBI
HuRef3154,261,958 - 154,274,873 (-)NCBIHuRef
CHM1_13156,828,587 - 156,841,484 (-)NCBICHM1_1
T2T-CHM13v2.03159,917,663 - 159,934,689 (-)NCBIT2T-CHM13v2.0
Ccnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82152,495,169 - 152,508,855 (-)NCBIGRCr8
mRatBN7.22150,184,865 - 150,199,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2150,184,798 - 150,197,368 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2157,294,697 - 157,307,010 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02155,345,203 - 155,357,516 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02149,977,917 - 149,990,230 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02157,747,295 - 157,759,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2157,747,542 - 157,759,838 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02177,110,678 - 177,122,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42155,757,335 - 155,769,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12155,707,300 - 155,719,596 (-)NCBI
Celera2144,599,445 - 144,611,743 (-)NCBICelera
Cytogenetic Map2q31NCBI
Ccnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554488,113,216 - 8,124,628 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554488,112,774 - 8,125,912 (-)NCBIChiLan1.0ChiLan1.0
CCNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,055,162 - 155,075,647 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13155,062,940 - 155,080,377 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03154,192,971 - 154,210,468 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13162,250,825 - 162,264,645 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3162,251,326 - 162,263,174 (-)Ensemblpanpan1.1panPan2
CCNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12350,639,851 - 50,643,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2350,512,891 - 50,525,567 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02351,273,830 - 51,286,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2351,273,791 - 51,287,522 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12350,857,079 - 50,869,721 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02350,909,267 - 50,921,953 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02351,194,168 - 51,206,919 (-)NCBIUU_Cfam_GSD_1.0
Ccnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560285,676,959 - 85,689,190 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365194,044,708 - 4,056,993 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365194,044,762 - 4,056,987 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1396,986,266 - 97,002,467 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11396,984,542 - 97,004,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213105,143,782 - 105,161,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11533,592,391 - 33,608,124 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1533,593,500 - 33,609,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660416,181,869 - 6,195,601 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473034,754,581 - 34,768,879 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473034,712,248 - 34,768,236 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccnl1
532 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2515
Count of miRNA genes:601
Interacting mature miRNAs:742
Transcripts:ENSMUST00000029416, ENSMUST00000122919, ENSMUST00000129002, ENSMUST00000132998, ENSMUST00000135719, ENSMUST00000142153, ENSMUST00000144810, ENSMUST00000145186, ENSMUST00000146284, ENSMUST00000148623, ENSMUST00000149160, ENSMUST00000149729, ENSMUST00000150304, ENSMUST00000154585
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse

Markers in Region
RH136206  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38365,959,974 - 65,960,174UniSTSGRCm38
MGSCv37365,763,896 - 65,764,096UniSTSGRCm37
Celera366,098,144 - 66,098,344UniSTS
Cytogenetic Map3E1UniSTS
Ccnl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38365,946,523 - 65,946,606UniSTSGRCm38
MGSCv37365,750,445 - 65,750,528UniSTSGRCm37
Celera366,084,694 - 66,084,777UniSTS
Cytogenetic Map3E1UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_867222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF159159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF185590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF467251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ150556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029416   ⟹   ENSMUSP00000029416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,853,572 - 65,865,670 (-)Ensembl
GRCm38.p6 Ensembl365,946,151 - 65,958,249 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,853,572 - 65,865,620 (-)Ensembl
GRCm38.p6 Ensembl365,946,151 - 65,958,199 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129002   ⟹   ENSMUSP00000118377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,853,572 - 65,865,583 (-)Ensembl
GRCm38.p6 Ensembl365,946,151 - 65,958,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,857,828 - 65,859,289 (-)Ensembl
GRCm38.p6 Ensembl365,950,407 - 65,951,868 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135719   ⟹   ENSMUSP00000118394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,853,616 - 65,865,453 (-)Ensembl
GRCm38.p6 Ensembl365,946,195 - 65,958,032 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,853,930 - 65,865,584 (-)Ensembl
GRCm38.p6 Ensembl365,946,509 - 65,958,163 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144810   ⟹   ENSMUSP00000122824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,855,375 - 65,864,277 (-)Ensembl
GRCm38.p6 Ensembl365,947,954 - 65,956,856 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145186   ⟹   ENSMUSP00000122314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,857,322 - 65,864,310 (-)Ensembl
GRCm38.p6 Ensembl365,949,901 - 65,956,889 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,858,670 - 65,860,414 (-)Ensembl
GRCm38.p6 Ensembl365,951,249 - 65,952,993 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,858,855 - 65,865,074 (-)Ensembl
GRCm38.p6 Ensembl365,951,434 - 65,957,653 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,856,313 - 65,865,602 (-)Ensembl
GRCm38.p6 Ensembl365,948,892 - 65,958,181 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,854,203 - 65,855,419 (-)Ensembl
GRCm38.p6 Ensembl365,946,782 - 65,947,998 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,855,929 - 65,858,399 (-)Ensembl
GRCm38.p6 Ensembl365,948,508 - 65,950,978 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154585   ⟹   ENSMUSP00000119229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,853,572 - 65,865,590 (-)Ensembl
GRCm38.p6 Ensembl365,946,151 - 65,958,169 (-)Ensembl
RefSeq Acc Id: NM_001355432   ⟹   NP_001342361
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,572 - 65,865,670 (-)NCBI
GRCm38365,946,151 - 65,958,249 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355433   ⟹   NP_001342362
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,572 - 65,865,670 (-)NCBI
GRCm38365,946,151 - 65,958,249 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019937   ⟹   NP_064321
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,572 - 65,865,670 (-)NCBI
GRCm38365,946,151 - 65,958,249 (-)NCBI
MGSCv37365,750,073 - 65,762,147 (-)RGD
Celera366,084,322 - 66,096,395 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240174   ⟹   XP_011238476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,856,118 - 65,869,451 (-)NCBI
GRCm38365,948,714 - 65,962,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252700   ⟹   XP_030108560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,333 - 65,865,638 (-)NCBI
GRCm38365,945,908 - 65,962,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163178   ⟹   XP_036019071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,333 - 65,865,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163179   ⟹   XP_036019072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,333 - 65,862,568 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941366
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,333 - 65,869,451 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941367
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,333 - 65,869,451 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941368
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,857,924 - 65,869,451 (-)NCBI
Sequence:
RefSeq Acc Id: XR_867222
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,853,333 - 65,869,451 (-)NCBI
GRCm38365,946,151 - 65,962,029 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_064321   ⟸   NM_019937
- Peptide Label: isoform 1
- UniProtKB: Q9CSZ3 (UniProtKB/Swiss-Prot),   Q922K0 (UniProtKB/Swiss-Prot),   Q8R5H9 (UniProtKB/Swiss-Prot),   Q8BQ75 (UniProtKB/Swiss-Prot),   Q9WV44 (UniProtKB/Swiss-Prot),   Q52KE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238476   ⟸   XM_011240174
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030108560   ⟸   XM_030252700
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001342362   ⟸   NM_001355433
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001342361   ⟸   NM_001355432
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000122314   ⟸   ENSMUST00000145186
RefSeq Acc Id: ENSMUSP00000122824   ⟸   ENSMUST00000144810
RefSeq Acc Id: ENSMUSP00000029416   ⟸   ENSMUST00000029416
RefSeq Acc Id: ENSMUSP00000118394   ⟸   ENSMUST00000135719
RefSeq Acc Id: ENSMUSP00000118377   ⟸   ENSMUST00000129002
RefSeq Acc Id: ENSMUSP00000119229   ⟸   ENSMUST00000154585
RefSeq Acc Id: XP_036019071   ⟸   XM_036163178
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019072   ⟸   XM_036163179
- Peptide Label: isoform X2
Protein Domains
Cyclin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KE7-F1-model_v2 AlphaFold Q52KE7 1-532 view protein structure

Promoters
RGD ID:6833549
Promoter ID:MM_KWN:34519
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000072947
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36365,751,596 - 65,752,852 (-)MPROMDB
RGD ID:6833548
Promoter ID:MM_KWN:34520
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000072945,   OTTMUST00000072946
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36365,754,851 - 65,756,622 (-)MPROMDB
RGD ID:6833547
Promoter ID:MM_KWN:34521
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Kidney,   MEF_B6
Transcripts:OTTMUST00000072944
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36365,756,706 - 65,757,717 (-)MPROMDB
RGD ID:6833546
Promoter ID:MM_KWN:34522
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000072942,   OTTMUST00000072943
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36365,760,381 - 65,761,412 (-)MPROMDB
RGD ID:6833576
Promoter ID:MM_KWN:34523
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000029415,   OTTMUST00000072934,   OTTMUST00000072937,   OTTMUST00000072938,   OTTMUST00000072940,   OTTMUST00000072941,   UC008PKV.1,   UC008PKW.1,   UC008PKX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36365,761,431 - 65,762,657 (-)MPROMDB
RGD ID:6880818
Promoter ID:EPDNEW_M3860
Type:initiation region
Name:Ccnl1_1
Description:Mus musculus cyclin L1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38365,958,181 - 65,958,241EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922664 AgrOrtholog
Ensembl Genes ENSMUSG00000027829 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029416 ENTREZGENE
  ENSMUST00000029416.14 UniProtKB/Swiss-Prot
  ENSMUST00000122919 ENTREZGENE
  ENSMUST00000129002.8 UniProtKB/TrEMBL
  ENSMUST00000135719.8 UniProtKB/TrEMBL
  ENSMUST00000144810.8 UniProtKB/TrEMBL
  ENSMUST00000145186.8 UniProtKB/TrEMBL
  ENSMUST00000154585.8 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/Swiss-Prot
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56706 UniProtKB/Swiss-Prot
MGD MGI:1922664 ENTREZGENE
NCBI Gene 56706 ENTREZGENE
PANTHER PTHR10026 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10026:SF64 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/Swiss-Prot
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccnl1 PhenoGen
PIRSF Cyclin_L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4FUU8_MOUSE UniProtKB/TrEMBL
  CCNL1_MOUSE UniProtKB/Swiss-Prot
  F6WST0_MOUSE UniProtKB/TrEMBL
  F6WYR6_MOUSE UniProtKB/TrEMBL
  F7BER3_MOUSE UniProtKB/TrEMBL
  F7BI63_MOUSE UniProtKB/TrEMBL
  Q52KE7 ENTREZGENE
  Q8BQ75 ENTREZGENE
  Q8R5H9 ENTREZGENE
  Q922K0 ENTREZGENE
  Q9CSZ3 ENTREZGENE
  Q9WV44 ENTREZGENE
UniProt Secondary Q8BQ75 UniProtKB/Swiss-Prot
  Q8R5H9 UniProtKB/Swiss-Prot
  Q922K0 UniProtKB/Swiss-Prot
  Q9CSZ3 UniProtKB/Swiss-Prot
  Q9WV44 UniProtKB/Swiss-Prot