Apbb3 (amyloid beta precursor protein binding family B member 3) - Rat Genome Database

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Gene: Apbb3 (amyloid beta precursor protein binding family B member 3) Mus musculus
Analyze
Symbol: Apbb3
Name: amyloid beta precursor protein binding family B member 3 (Ensembl:amyloid beta (A4) precursor protein-binding, family B, member 3)
RGD ID: 733385
MGI Page MGI
Description: Predicted to enable amyloid-beta binding activity and low-density lipoprotein particle receptor binding activity. Predicted to be involved in negative regulation of cell cycle phase transition; negative regulation of transcription by RNA polymerase II; and positive regulation of protein secretion. Predicted to act upstream of or within negative regulation of apoptotic process. Predicted to be located in several cellular components, including actin cytoskeleton; cytosol; and nuclear body. Predicted to be active in cytoplasm and nucleus. Orthologous to human APBB3 (amyloid beta precursor protein binding family B member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: amyloid beta (A4) precursor protein-binding, family B, member 3; amyloid beta A4 precursor protein-binding family B member 3; amyloid-beta A4 precursor protein-binding family B member 3; Fe65l; Fe65l2; MGC38710; R; Rirl2; TR; TR2S
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,804,207 - 36,812,419 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,804,207 - 36,812,419 (-)EnsemblGRCm39 Ensembl
GRCm381836,671,154 - 36,679,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,671,154 - 36,679,366 (-)EnsemblGRCm38mm10GRCm38
MGSCv371836,830,813 - 36,839,020 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,797,133 - 36,805,340 (-)NCBIMGSCv36mm8
Celera1837,120,261 - 37,128,499 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (ISO)
cytoplasm  (IBA)
cytosol  (ISO)
membrane  (ISO)
nuclear body  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8858135   PMID:8889548   PMID:9546346   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16407979   PMID:18799693   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
Apbb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,804,207 - 36,812,419 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,804,207 - 36,812,419 (-)EnsemblGRCm39 Ensembl
GRCm381836,671,154 - 36,679,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,671,154 - 36,679,366 (-)EnsemblGRCm38mm10GRCm38
MGSCv371836,830,813 - 36,839,020 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,797,133 - 36,805,340 (-)NCBIMGSCv36mm8
Celera1837,120,261 - 37,128,499 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
APBB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,558,268 - 140,564,598 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,558,268 - 140,564,781 (-)EnsemblGRCh38hg38GRCh38
GRCh375139,937,853 - 139,944,183 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,918,037 - 139,924,373 (-)NCBINCBI36Build 36hg18NCBI36
Celera5136,014,603 - 136,020,939 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,083,190 - 135,089,524 (-)NCBIHuRef
CHM1_15139,371,101 - 139,377,437 (-)NCBICHM1_1
T2T-CHM13v2.05141,083,699 - 141,090,029 (-)NCBIT2T-CHM13v2.0
Apbb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,547,205 - 28,554,383 (-)NCBIGRCr8
mRatBN7.21828,273,168 - 28,280,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,270,545 - 28,280,094 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,400,313 - 28,407,491 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,162,404 - 29,169,582 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,497,642 - 28,504,820 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,497,865 - 29,504,995 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,497,863 - 29,504,995 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,202,939 - 29,210,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,310,421 - 29,317,546 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,337,068 - 29,344,192 (-)NCBI
Celera1828,000,350 - 28,007,475 (-)NCBICelera
Cytogenetic Map18p11NCBI
Apbb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418120,119 - 125,711 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955418118,577 - 126,021 (+)NCBIChiLan1.0ChiLan1.0
APBB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,815,801 - 135,822,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,955,352 - 133,961,698 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,922,662 - 135,928,995 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,039,819 - 142,046,157 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,039,818 - 142,046,157 (-)Ensemblpanpan1.1panPan2
APBB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,753,212 - 35,759,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,753,241 - 35,759,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,791,445 - 32,797,399 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,207,844 - 36,213,798 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,207,844 - 36,213,595 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,260,715 - 33,266,669 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,128,254 - 34,134,207 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,880,947 - 34,886,901 (-)NCBIUU_Cfam_GSD_1.0
Apbb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,079,566 - 152,085,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,526,185 - 9,531,521 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,525,879 - 9,531,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APBB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,313,777 - 142,320,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,307,049 - 142,320,725 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,257,916 - 148,264,592 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APBB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,202,835 - 43,209,401 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,203,152 - 43,209,109 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,675,252 - 34,681,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apbb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,322,792 - 33,328,391 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,322,496 - 33,328,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Apbb3
297 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:202
Count of miRNA genes:175
Interacting mature miRNAs:184
Transcripts:ENSMUST00000001415
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
11041903Lmr27_mleishmaniasis resistance 27 (mouse)183618756745109518Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse

Markers in Region
UniSTS:237782  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,679,000 - 36,679,285UniSTSGRCm38
MGSCv371836,838,654 - 36,838,939UniSTSGRCm37
Celera1837,128,133 - 37,128,418UniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map18B3UniSTS
MARC_6511-6512:996689730:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,675,702 - 36,676,693UniSTSGRCm38
MGSCv371836,835,356 - 36,836,347UniSTSGRCm37
Celera1837,124,834 - 37,125,825UniSTS
Cytogenetic Map18B2UniSTS
MARC_4701-4702:996679619:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,675,009 - 36,675,737UniSTSGRCm38
MGSCv371836,834,663 - 36,835,391UniSTSGRCm37
Celera1837,124,141 - 37,124,869UniSTS
Cytogenetic Map18B2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI844683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000001415   ⟹   ENSMUSP00000001415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,804,207 - 36,812,419 (-)Ensembl
GRCm38.p6 Ensembl1836,671,154 - 36,679,366 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,804,376 - 36,808,528 (-)Ensembl
GRCm38.p6 Ensembl1836,671,323 - 36,675,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,807,749 - 36,809,483 (-)Ensembl
GRCm38.p6 Ensembl1836,674,696 - 36,676,430 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,804,208 - 36,812,369 (-)Ensembl
GRCm38.p6 Ensembl1836,671,155 - 36,679,316 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,804,670 - 36,809,611 (-)Ensembl
GRCm38.p6 Ensembl1836,671,617 - 36,676,558 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,810,087 - 36,811,126 (-)Ensembl
GRCm38.p6 Ensembl1836,677,034 - 36,678,073 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237679   ⟹   ENSMUSP00000157608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,809,512 - 36,810,195 (-)Ensembl
GRCm38.p6 Ensembl1836,676,459 - 36,677,142 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,808,037 - 36,809,539 (-)Ensembl
GRCm38.p6 Ensembl1836,674,984 - 36,676,486 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237965   ⟹   ENSMUSP00000158188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,809,456 - 36,812,124 (-)Ensembl
GRCm38.p6 Ensembl1836,676,403 - 36,679,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,809,834 - 36,810,193 (-)Ensembl
GRCm38.p6 Ensembl1836,676,781 - 36,677,140 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238072   ⟹   ENSMUSP00000157386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,808,407 - 36,809,458 (-)Ensembl
GRCm38.p6 Ensembl1836,675,354 - 36,676,405 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,809,438 - 36,811,622 (-)Ensembl
GRCm38.p6 Ensembl1836,676,385 - 36,678,569 (-)Ensembl
RefSeq Acc Id: NM_001357512   ⟹   NP_001344441
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,804,207 - 36,812,419 (-)NCBI
GRCm381836,671,154 - 36,679,366 (-)NCBI
Sequence:
RefSeq Acc Id: NM_146085   ⟹   NP_666197
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,804,207 - 36,812,419 (-)NCBI
GRCm381836,671,154 - 36,679,366 (-)NCBI
MGSCv371836,830,813 - 36,839,020 (-)RGD
Celera1837,120,261 - 37,128,499 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036161110   ⟹   XP_036017003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,804,207 - 36,810,507 (-)NCBI
Sequence:
RefSeq Acc Id: NP_666197   ⟸   NM_146085
- Peptide Label: isoform 1
- UniProtKB: Q8R1C9 (UniProtKB/Swiss-Prot),   Q3UR23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344441   ⟸   NM_001357512
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000158188   ⟸   ENSMUST00000237965
RefSeq Acc Id: ENSMUSP00000157608   ⟸   ENSMUST00000237679
RefSeq Acc Id: ENSMUSP00000001415   ⟸   ENSMUST00000001415
RefSeq Acc Id: ENSMUSP00000157386   ⟸   ENSMUST00000238072
RefSeq Acc Id: XP_036017003   ⟸   XM_036161110
- Peptide Label: isoform X1
Protein Domains
PID   WW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1C9-F1-model_v2 AlphaFold Q8R1C9 1-486 view protein structure

Promoters
RGD ID:13677474
Promoter ID:EPDNEW_M22886
Type:multiple initiation site
Name:Apbb3_1
Description:Mus musculus amyloid beta precursor protein-binding, family B,member 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381836,679,433 - 36,679,493EPDNEW
RGD ID:6829080
Promoter ID:MM_KWN:24981
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:UC008EOA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361836,836,531 - 36,837,031 (-)MPROMDB
RGD ID:6829079
Promoter ID:MM_KWN:24982
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_2Hour,   Brain,   ES_Cell,   MEF_B6
Transcripts:ENSMUST00000001415,   ENSMUST00000115684,   NM_146085,   UC008ENZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361836,838,601 - 36,839,101 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108404 AgrOrtholog
Ensembl Genes ENSMUSG00000001379
  ENSMUSG00000117679 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001415 ENTREZGENE
  ENSMUST00000001415.9 UniProtKB/Swiss-Prot
  ENSMUST00000237679.2 UniProtKB/TrEMBL
  ENSMUST00000237965.2 UniProtKB/TrEMBL
  ENSMUST00000238072.2 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fe65 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:225372 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:108404 ENTREZGENE
NCBI Gene 225372 ENTREZGENE
PANTHER AMYLOID-BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14058 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00397 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Apbb3 PhenoGen
PROSITE PID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B8W9_MOUSE UniProtKB/TrEMBL
  A0A494B9D6_MOUSE UniProtKB/TrEMBL
  A0A494BAU6_MOUSE UniProtKB/TrEMBL
  APBB3_MOUSE UniProtKB/Swiss-Prot
  Q3UR23 ENTREZGENE, UniProtKB/TrEMBL
  Q8R1C9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Apbb3  amyloid beta precursor protein binding family B member 3  Apbb3  amyloid beta (A4) precursor protein-binding, family B, member 3  Symbol and/or name change 5135510 APPROVED