Rabep1 (rabaptin, RAB GTPase binding effector protein 1) - Rat Genome Database

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Gene: Rabep1 (rabaptin, RAB GTPase binding effector protein 1) Mus musculus
Analyze
Symbol: Rabep1
Name: rabaptin, RAB GTPase binding effector protein 1
RGD ID: 733344
MGI Page MGI
Description: Predicted to enable protein domain specific binding activity and protein homodimerization activity. Involved in Golgi to plasma membrane transport and protein localization to ciliary membrane. Located in endosome. Is expressed in brain; embryo; head; lung; and thymus. Orthologous to human RABEP1 (rabaptin, RAB GTPase binding effector protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA409789; AI481320; AV213537; AW240603; MGC150053; MGC150054; neurocrescin; rab GTPase-binding effector protein 1; RAB5 effector protein; Rab5ep; raba; rabaptin 5; rabaptin-5; rabaptin-5alpha
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,735,553 - 70,833,931 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,735,604 - 70,833,931 (+)EnsemblGRCm39 Ensembl
GRCm381170,844,724 - 70,943,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,844,778 - 70,943,105 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,658,265 - 70,756,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,661,120 - 70,757,135 (+)NCBIMGSCv36mm8
Celera1178,399,194 - 78,497,475 (+)NCBICelera
Cytogenetic Map11B3- B4NCBI
cM Map1143.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9027501   PMID:9427343   PMID:9524116   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11318612   PMID:11977240   PMID:12119113  
PMID:12477932   PMID:12520002   PMID:12890772   PMID:14610273   PMID:15489334   PMID:15529118   PMID:15782199   PMID:15840001   PMID:15863237   PMID:16141072   PMID:16141073   PMID:17341663  
PMID:17967808   PMID:18698003   PMID:20169068   PMID:21267068   PMID:21565611   PMID:21873635   PMID:22682244   PMID:22841712   PMID:22975325   PMID:23430262   PMID:24696234   PMID:25385014  
PMID:25405894   PMID:26496610   PMID:27811335   PMID:28190767   PMID:28671696   PMID:29400714   PMID:29669786   PMID:29997285   PMID:32325033   PMID:33339852   PMID:36417873  


Genomics

Comparative Map Data
Rabep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,735,553 - 70,833,931 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,735,604 - 70,833,931 (+)EnsemblGRCm39 Ensembl
GRCm381170,844,724 - 70,943,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,844,778 - 70,943,105 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,658,265 - 70,756,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,661,120 - 70,757,135 (+)NCBIMGSCv36mm8
Celera1178,399,194 - 78,497,475 (+)NCBICelera
Cytogenetic Map11B3- B4NCBI
cM Map1143.21NCBI
RABEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,282,284 - 5,386,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,282,265 - 5,386,340 (+)EnsemblGRCh38hg38GRCh38
GRCh37175,185,579 - 5,289,660 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,126,282 - 5,229,856 (+)NCBINCBI36Build 36hg18NCBI36
Build 34175,126,308 - 5,229,855NCBI
Celera175,202,076 - 5,305,503 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,076,120 - 5,179,776 (+)NCBIHuRef
CHM1_1175,194,871 - 5,298,790 (+)NCBICHM1_1
T2T-CHM13v2.0175,176,049 - 5,280,075 (+)NCBIT2T-CHM13v2.0
Rabep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,064,742 - 56,168,778 (+)NCBIGRCr8
mRatBN7.21055,566,156 - 55,667,595 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,566,185 - 55,665,973 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,246,541 - 60,345,682 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,735,063 - 59,834,201 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,234,142 - 55,333,286 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,462,272 - 57,579,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,462,447 - 57,579,898 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,207,704 - 57,326,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,746,747 - 57,847,498 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,760,369 - 57,861,121 (+)NCBI
Celera1054,712,478 - 54,811,806 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rabep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,613,861 - 10,747,255 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,613,671 - 10,748,122 (+)NCBIChiLan1.0ChiLan1.0
RABEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,892,660 - 12,996,355 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,860,602 - 14,964,572 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,330,477 - 5,434,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,344,966 - 5,426,160 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,344,966 - 5,426,160 (+)Ensemblpanpan1.1panPan2
RABEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,390,873 - 31,442,585 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,391,576 - 31,491,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,528,879 - 31,630,006 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,495,500 - 31,595,348 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,495,489 - 31,595,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,461,067 - 31,562,173 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,419,943 - 31,521,587 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,596,383 - 31,697,964 (-)NCBIUU_Cfam_GSD_1.0
Rabep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,419,365 - 53,483,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,417,679 - 2,512,868 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,417,676 - 2,481,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,602,226 - 51,858,206 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,602,228 - 51,868,180 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,899,560 - 53,926,902 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,670,448 - 4,795,309 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,670,499 - 4,792,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605916,792,952 - 16,904,507 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,060,895 - 9,191,767 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,060,953 - 9,191,767 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabep1
414 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1795
Count of miRNA genes:626
Interacting mature miRNAs:802
Transcripts:ENSMUST00000076270, ENSMUST00000081362, ENSMUST00000100928, ENSMUST00000108533, ENSMUST00000142220, ENSMUST00000177731, ENSMUST00000178245, ENSMUST00000179114
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse

Markers in Region
AV213537  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,940,728 - 70,940,831UniSTSGRCm38
MGSCv371170,754,230 - 70,754,333UniSTSGRCm37
Celera1178,495,098 - 78,495,201UniSTS
Cytogenetic Map11B3-B4UniSTS
Whitehead/MRC_RH11904.85UniSTS
AI481320  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,941,612 - 70,941,716UniSTSGRCm38
MGSCv371170,755,114 - 70,755,218UniSTSGRCm37
Celera1178,495,982 - 78,496,086UniSTS
Cytogenetic Map11B3-B4UniSTS
Whitehead/MRC_RH11904.85UniSTS
RH124505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,900,800 - 70,900,891UniSTSGRCm38
MGSCv371170,714,302 - 70,714,393UniSTSGRCm37
Celera1178,455,202 - 78,455,293UniSTS
Cytogenetic Map11B3-B4UniSTS
RH125884  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,940,983 - 70,941,232UniSTSGRCm38
MGSCv371170,754,485 - 70,754,734UniSTSGRCm37
Celera1178,495,353 - 78,495,602UniSTS
Cytogenetic Map11B3-B4UniSTS
Whitehead/MRC_RH11903.44UniSTS
UniSTS:236626  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,880,496 - 70,880,734UniSTSGRCm38
MGSCv371170,693,998 - 70,694,236UniSTSGRCm37
Celera1178,434,936 - 78,435,174UniSTS
Cytogenetic Map11B3-B4UniSTS
D11Die10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,879,859 - 70,880,075UniSTSGRCm38
MGSCv371170,693,361 - 70,693,577UniSTSGRCm37
Celera1178,434,299 - 78,434,515UniSTS
Cytogenetic Map11B3-B4UniSTS
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
D11Die31  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,857,796 - 70,857,950UniSTSGRCm38
MGSCv371170,671,298 - 70,671,452UniSTSGRCm37
Celera1178,412,240 - 78,412,394UniSTS
Cytogenetic Map11B3-B4UniSTS
cM Map11 UniSTS
D11Die9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,877,375 - 70,877,505UniSTSGRCm38
MGSCv371170,690,877 - 70,691,007UniSTSGRCm37
Celera1178,431,815 - 78,431,945UniSTS
Cytogenetic Map11B3-B4UniSTS
cM Map11 UniSTS
Rabep1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3-B4UniSTS
cM Map1142.0UniSTS
Rabep1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3-B4UniSTS
cM Map1142.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB001750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF248489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF248490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY133091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY718394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000076270   ⟹   ENSMUSP00000075619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,604 - 70,833,931 (+)Ensembl
GRCm38.p6 Ensembl1170,844,778 - 70,943,105 (+)Ensembl
RefSeq Acc Id: ENSMUST00000081362   ⟹   ENSMUSP00000080102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,801 - 70,831,309 (+)Ensembl
GRCm38.p6 Ensembl1170,844,975 - 70,940,483 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100928   ⟹   ENSMUSP00000098488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,625 - 70,832,124 (+)Ensembl
GRCm38.p6 Ensembl1170,844,799 - 70,941,298 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108533   ⟹   ENSMUSP00000104173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,768 - 70,831,472 (+)Ensembl
GRCm38.p6 Ensembl1170,844,942 - 70,940,646 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,608 - 70,832,129 (+)Ensembl
GRCm38.p6 Ensembl1170,844,782 - 70,941,303 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177731   ⟹   ENSMUSP00000136069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,751 - 70,831,766 (+)Ensembl
GRCm38.p6 Ensembl1170,844,925 - 70,940,940 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178245   ⟹   ENSMUSP00000137267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,801 - 70,831,309 (+)Ensembl
GRCm38.p6 Ensembl1170,844,975 - 70,940,483 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179114   ⟹   ENSMUSP00000136369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,735,618 - 70,784,947 (+)Ensembl
GRCm38.p6 Ensembl1170,844,792 - 70,894,121 (+)Ensembl
RefSeq Acc Id: NM_001291141   ⟹   NP_001278070
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,587 - 70,833,931 (+)NCBI
GRCm381170,844,761 - 70,943,105 (+)NCBI
Celera1178,399,192 - 78,497,475 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291142   ⟹   NP_001278071
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,587 - 70,833,931 (+)NCBI
GRCm381170,844,761 - 70,943,105 (+)NCBI
Celera1178,399,192 - 78,497,475 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291143   ⟹   NP_001278072
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,587 - 70,833,931 (+)NCBI
GRCm381170,844,761 - 70,943,105 (+)NCBI
Celera1178,399,192 - 78,497,475 (+)NCBI
Sequence:
RefSeq Acc Id: NM_019400   ⟹   NP_062273
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,587 - 70,833,931 (+)NCBI
GRCm381170,844,761 - 70,943,105 (+)NCBI
MGSCv371170,658,265 - 70,756,607 (+)RGD
Celera1178,399,192 - 78,497,475 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533750   ⟹   XP_006533813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,553 - 70,833,728 (+)NCBI
GRCm381170,844,724 - 70,942,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156854   ⟹   XP_036012747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,553 - 70,833,728 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936993
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,735,553 - 70,833,931 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001278070 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278071 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278072 (Get FASTA)   NCBI Sequence Viewer  
  NP_062273 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533813 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012747 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF78238 (Get FASTA)   NCBI Sequence Viewer  
  AAG44544 (Get FASTA)   NCBI Sequence Viewer  
  AAH03921 (Get FASTA)   NCBI Sequence Viewer  
  AAH60166 (Get FASTA)   NCBI Sequence Viewer  
  AAI29854 (Get FASTA)   NCBI Sequence Viewer  
  AAI29855 (Get FASTA)   NCBI Sequence Viewer  
  BAA21783 (Get FASTA)   NCBI Sequence Viewer  
  BAA23818 (Get FASTA)   NCBI Sequence Viewer  
  BAB31710 (Get FASTA)   NCBI Sequence Viewer  
  BAE30784 (Get FASTA)   NCBI Sequence Viewer  
  BAE37204 (Get FASTA)   NCBI Sequence Viewer  
  EDL12620 (Get FASTA)   NCBI Sequence Viewer  
  EDL12621 (Get FASTA)   NCBI Sequence Viewer  
  EDL12622 (Get FASTA)   NCBI Sequence Viewer  
  EDL12623 (Get FASTA)   NCBI Sequence Viewer  
  EDL12624 (Get FASTA)   NCBI Sequence Viewer  
  EDL12625 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000075619
  ENSMUSP00000075619.7
  ENSMUSP00000080102
  ENSMUSP00000080102.7
  ENSMUSP00000098488
  ENSMUSP00000098488.5
  ENSMUSP00000104173.4
  ENSMUSP00000136069
  ENSMUSP00000136069.2
  ENSMUSP00000136369.2
  ENSMUSP00000137267
  ENSMUSP00000137267.2
GenBank Protein O35551 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062273   ⟸   NM_019400
- Peptide Label: isoform 1
- UniProtKB: Q9EQF9 (UniProtKB/Swiss-Prot),   Q9CRP3 (UniProtKB/Swiss-Prot),   Q99L08 (UniProtKB/Swiss-Prot),   Q5QNU3 (UniProtKB/Swiss-Prot),   A1L322 (UniProtKB/Swiss-Prot),   Q9JI94 (UniProtKB/Swiss-Prot),   O35551 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533813   ⟸   XM_006533750
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001278072   ⟸   NM_001291143
- Peptide Label: isoform 4
- UniProtKB: J3QJV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278071   ⟸   NM_001291142
- Peptide Label: isoform 3
- UniProtKB: O35551 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278070   ⟸   NM_001291141
- Peptide Label: isoform 2
- UniProtKB: O35551 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137267   ⟸   ENSMUST00000178245
RefSeq Acc Id: ENSMUSP00000136069   ⟸   ENSMUST00000177731
RefSeq Acc Id: ENSMUSP00000104173   ⟸   ENSMUST00000108533
RefSeq Acc Id: ENSMUSP00000136369   ⟸   ENSMUST00000179114
RefSeq Acc Id: ENSMUSP00000075619   ⟸   ENSMUST00000076270
RefSeq Acc Id: ENSMUSP00000080102   ⟸   ENSMUST00000081362
RefSeq Acc Id: ENSMUSP00000098488   ⟸   ENSMUST00000100928
RefSeq Acc Id: XP_036012747   ⟸   XM_036156854
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35551-F1-model_v2 AlphaFold O35551 1-862 view protein structure

Promoters
RGD ID:6821690
Promoter ID:MM_KWN:8255
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000081362,   ENSMUST00000100928,   ENSMUST00000108533,   OTTMUST00000013732,   UC007JWQ.1,   UC007JWS.1,   UC007JWT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,657,961 - 70,658,461 (+)MPROMDB
RGD ID:8675376
Promoter ID:EPDNEW_M15718
Type:initiation region
Name:Rabep1_1
Description:Mus musculus rabaptin, RAB GTPase binding effector protein 1, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15719  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,844,754 - 70,844,814EPDNEW
RGD ID:8675378
Promoter ID:EPDNEW_M15719
Type:multiple initiation site
Name:Rabep1_2
Description:Mus musculus rabaptin, RAB GTPase binding effector protein 1, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15718  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,879,416 - 70,879,476EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860236 AgrOrtholog
Ensembl Genes ENSMUSG00000020817 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076270 ENTREZGENE
  ENSMUST00000076270.13 UniProtKB/Swiss-Prot
  ENSMUST00000081362 ENTREZGENE
  ENSMUST00000081362.13 UniProtKB/Swiss-Prot
  ENSMUST00000100928 ENTREZGENE
  ENSMUST00000100928.11 UniProtKB/Swiss-Prot
  ENSMUST00000108533.10 UniProtKB/Swiss-Prot
  ENSMUST00000177731 ENTREZGENE
  ENSMUST00000177731.8 UniProtKB/TrEMBL
  ENSMUST00000178245 ENTREZGENE
  ENSMUST00000178245.2 UniProtKB/Swiss-Prot
  ENSMUST00000179114.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Rabaptin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rabaptin_coiled-coil UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rabaptin_Rab5-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54189 UniProtKB/Swiss-Prot
MGD MGI:1860236 ENTREZGENE
NCBI Gene 54189 ENTREZGENE
PANTHER PTHR31179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31179:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Rab5-bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rabaptin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rabep1 PhenoGen
PRINTS RABAPTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP G protein-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1L322 ENTREZGENE
  J3QJV7 ENTREZGENE, UniProtKB/TrEMBL
  O35551 ENTREZGENE
  Q3TR27_MOUSE UniProtKB/TrEMBL
  Q3U983_MOUSE UniProtKB/TrEMBL
  Q5QNU3 ENTREZGENE
  Q99L08 ENTREZGENE
  Q9CRP3 ENTREZGENE
  Q9EQF9 ENTREZGENE
  Q9JI94 ENTREZGENE
  RABE1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A1L322 UniProtKB/Swiss-Prot
  Q5QNU3 UniProtKB/Swiss-Prot
  Q99L08 UniProtKB/Swiss-Prot
  Q9CRP3 UniProtKB/Swiss-Prot
  Q9EQF9 UniProtKB/Swiss-Prot
  Q9JI94 UniProtKB/Swiss-Prot