Slc22a4 (solute carrier family 22 (organic cation transporter), member 4) - Rat Genome Database
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Gene: Slc22a4 (solute carrier family 22 (organic cation transporter), member 4) Mus musculus
Analyze
Symbol: Slc22a4
Name: solute carrier family 22 (organic cation transporter), member 4
RGD ID: 733282
MGI Page MGI
Description: Exhibits carnitine transmembrane transporter activity. Involved in carnitine metabolic process; carnitine transport; and triglyceride metabolic process. Localizes to mitochondrion. Is expressed in several structures, including integumental system; liver; musculoskeletal system; nervous system; and nose. Human ortholog(s) of this gene implicated in rheumatoid arthritis. Orthologous to human SLC22A4 (solute carrier family 22 member 4); PARTICIPATES IN cisplatin response pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LSTP-Like 2; Oct; Octn1; organic cation transporter 1; organic cation/carnitine transporter 1; solute carrier family (organic cation transporter), member 4; solute carrier family 22 member 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12220  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,873,941 - 53,920,866 (-)NCBIGRCm39mm39
GRCm381153,983,115 - 54,030,040 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,983,123 - 54,028,090 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,796,628 - 53,841,592 (-)NCBIGRCm37mm9NCBIm37
MGSCv361153,826,549 - 53,871,513 (-)NCBImm8
Celera1158,570,827 - 58,615,496 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-carnitine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (EXP)
ammonium chloride  (ISO)
angelicin  (EXP)
antirheumatic drug  (ISO)
atropine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
carbon nanotube  (EXP)
carvedilol  (ISO)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP)
cobalt dichloride  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diltiazem  (ISO)
dithioerythritol  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
flecainide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
graphite  (ISO)
hydroxyurea  (ISO)
imperatorin  (EXP)
ipratropium  (ISO)
L-cysteine  (ISO)
leflunomide  (ISO)
lidocaine  (ISO)
mangiferin  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methyl methacrylate  (EXP)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP)
nifedipine  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
phenformin  (EXP)
pirinixic acid  (ISO)
Potassium 2,6-dihydroxytriazinecarboxylate  (EXP)
probenecid  (EXP)
propafenone  (ISO)
propranolol  (ISO)
psoralen  (EXP)
quercetin  (EXP)
rotenone  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
sodium dodecyl sulfate  (ISO)
Soman  (ISO)
spironolactone  (ISO)
succimer  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetraethylammonium  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trans-piceid  (EXP)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
verapamil  (ISO)
zidovudine  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10655497   PMID:10704283   PMID:11010964   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12535646   PMID:14531806  
PMID:14651853   PMID:14681479   PMID:15369770   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16246312   PMID:16465594   PMID:16729965   PMID:17576045   PMID:18614015   PMID:19233567  
PMID:19656490   PMID:20224991   PMID:21267068   PMID:21873635   PMID:22454430   PMID:22944603   PMID:23221006   PMID:23771822   PMID:25422143   PMID:25707686   PMID:25947923   PMID:26003890  
PMID:26449520   PMID:26536134   PMID:27023905   PMID:28688036   PMID:28754554   PMID:28993647   PMID:32070725  


Genomics

Comparative Map Data
Slc22a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,873,941 - 53,920,866 (-)NCBIGRCm39mm39
GRCm381153,983,115 - 54,030,040 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,983,123 - 54,028,090 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,796,628 - 53,841,592 (-)NCBIGRCm37mm9NCBIm37
MGSCv361153,826,549 - 53,871,513 (-)NCBImm8
Celera1158,570,827 - 58,615,496 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.07NCBI
SLC22A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5132,294,394 - 132,344,190 (+)EnsemblGRCh38hg38GRCh38
GRCh385132,294,384 - 132,344,199 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375131,630,145 - 131,679,899 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365131,658,044 - 131,707,798 (+)NCBINCBI36hg18NCBI36
Build 345131,658,043 - 131,707,796NCBI
Celera5127,760,255 - 127,809,972 (+)NCBI
Cytogenetic Map5q31.1NCBI
HuRef5126,822,406 - 126,872,150 (+)NCBIHuRef
CHM1_15131,062,911 - 131,112,639 (+)NCBICHM1_1
Slc22a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01039,334,972 - 39,373,508 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01039,121,490 - 39,154,295 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1037,476,326 - 37,522,094 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc22a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554083,671,772 - 3,737,612 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554083,671,772 - 3,737,946 (+)NCBIChiLan1.0ChiLan1.0
SLC22A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15133,879,374 - 133,929,439 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5133,879,387 - 133,929,439 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05127,717,077 - 127,766,793 (+)NCBIMhudiblu_PPA_v0panPan3
SLC22A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11120,599,281 - 20,643,893 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc22a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366472,825,814 - 2,874,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2134,595,536 - 134,640,723 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12134,594,843 - 134,641,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22139,999,122 - 140,061,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,123,442 - 35,173,254 (+)NCBI
ChlSab1.1 Ensembl2335,124,433 - 35,173,264 (+)Ensembl
Slc22a4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473339,740,026 - 39,809,265 (-)NCBI

Position Markers
Slc22a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.3UniSTS
cM Map1128.0UniSTS
AB016257  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,983,479 - 53,983,563UniSTSGRCm38
MGSCv371153,796,981 - 53,797,065UniSTSGRCm37
Celera1158,571,180 - 58,571,264UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11728.8UniSTS
Slc22a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.3UniSTS
Slc22a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.3UniSTS
cM Map1128.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
14746971Manh70_mmandible shape 70 (mouse)112001506354015063Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
1300569Eae6b_msusceptibility to experimental allergic encephalomyelitis 6b (mouse)Not determined114005990154203622Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114288179954190238Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined114005990154203622Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:324
Count of miRNA genes:253
Interacting mature miRNAs:282
Transcripts:ENSMUST00000020586, ENSMUST00000146351, ENSMUST00000154369
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001330304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB016257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD773920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ192519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ192520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN007396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020586   ⟹   ENSMUSP00000020586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1153,983,123 - 54,028,090 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1153,992,059 - 54,007,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154369
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1154,014,260 - 54,027,952 (-)Ensembl
RefSeq Acc Id: NM_001330304   ⟹   NP_001317233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,918,930 (-)NCBI
GRCm381153,983,115 - 54,028,104 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019687   ⟹   NP_062661
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,918,930 (-)NCBI
GRCm381153,983,115 - 54,028,104 (-)NCBI
MGSCv371153,796,628 - 53,841,592 (-)RGD
Celera1158,570,827 - 58,615,496 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533512   ⟹   XP_006533575
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,920,866 (-)NCBI
GRCm381153,983,123 - 54,030,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249065   ⟹   XP_011247367
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,920,866 (-)NCBI
GRCm381153,983,123 - 54,030,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314588   ⟹   XP_017170077
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,920,866 (-)NCBI
GRCm381153,983,123 - 54,030,040 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949459
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,920,866 (-)NCBI
GRCm381153,983,123 - 54,030,040 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949460
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,873,941 - 53,920,866 (-)NCBI
GRCm381153,983,123 - 54,030,040 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062661   ⟸   NM_019687
- Peptide Label: isoform 1
- UniProtKB: Q9Z306 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533575   ⟸   XM_006533512
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011247367   ⟸   XM_011249065
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017170077   ⟸   XM_017314588
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001317233   ⟸   NM_001330304
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000020586   ⟸   ENSMUST00000020586

Promoters
RGD ID:6822116
Promoter ID:MM_KWN:7418
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000012581
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361153,821,214 - 53,821,714 (-)MPROMDB
RGD ID:6822114
Promoter ID:MM_KWN:7419
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:OTTMUST00000012580,   OTTMUST00000012582
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361153,841,706 - 53,842,337 (-)MPROMDB
RGD ID:8674638
Promoter ID:EPDNEW_M15350
Type:multiple initiation site
Name:Slc22a4_1
Description:Mus musculus solute carrier family 22 , member 4 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,028,104 - 54,028,164EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353479 AgrOrtholog
Ensembl Genes ENSMUSG00000020334 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000020586 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020586 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro MFS_dom UniProtKB/Swiss-Prot
  MFS_sugar_transport-like UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  Orgcat_transp/SVOP UniProtKB/Swiss-Prot
  Sugar_transporter_CS UniProtKB/Swiss-Prot
KEGG Report mmu:30805 UniProtKB/Swiss-Prot
MGD MGI:1353479 ENTREZGENE
NCBI Gene 30805 ENTREZGENE
Pfam Sugar_tr UniProtKB/Swiss-Prot
PharmGKB SLC22A4 RGD
PhenoGen Slc22a4 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot
  SUGAR_TRANSPORT_1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
TIGRFAMs 2A0119 UniProtKB/Swiss-Prot
UniProt Q9Z306 ENTREZGENE, UniProtKB/Swiss-Prot