S100a9 (S100 calcium binding protein A9 (calgranulin B)) - Rat Genome Database

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Gene: S100a9 (S100 calcium binding protein A9 (calgranulin B)) Mus musculus
Analyze
Symbol: S100a9
Name: S100 calcium binding protein A9 (calgranulin B)
RGD ID: 733175
MGI Page MGI
Description: Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Involved in peptidyl-cysteine S-nitrosylation; positive regulation of blood coagulation; and regulation of translation. Acts upstream of or within several processes, including actin cytoskeleton reorganization; astrocyte development; and regulation of integrin biosynthetic process. Is active in cornified envelope. Is expressed in several structures, including jaw; liver; otic capsule; skeleton; and spleen red pulp. Human ortholog(s) of this gene implicated in myocarditis. Orthologous to human S100A9 (S100 calcium binding protein A9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60B8A; 60B8Ag; AW546964; BEE22; Cag; Cagb; calgranulin-B; GAG; GAGB; L1; L1Ag; leukocyte L1 complex heavy chain; migration inhibitory factor-related protein 14; MRP; MRP-14; MRP14; p1; p14; S100 calcium-binding protein A9; S100 calcium-binding protein A9 (calgranulin B)
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,599,937 - 90,603,028 (-)NCBIGRCm39mm39
GRCm39 Ensembl390,599,939 - 90,603,028 (-)Ensembl
GRCm38390,692,630 - 90,695,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,692,632 - 90,695,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,496,555 - 90,499,613 (-)NCBIGRCm37mm9NCBIm37
MGSCv36390,778,560 - 90,781,618 (-)NCBImm8
Celera390,734,035 - 90,737,073 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-noradrenaline  (ISO)
(S)-colchicine  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-mercaptopropanoic acid  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
aconitine  (ISO)
acrylamide  (EXP)
Actein  (ISO)
aflatoxin B1  (ISO)
alachlor  (ISO)
aldehydo-D-glucose  (ISO)
aldrin  (EXP)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
aluminium oxide  (EXP)
ammonium chloride  (ISO)
ampicillin  (EXP)
antirheumatic drug  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenous acid  (ISO)
azathioprine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium dichloride  (ISO)
calcium(0)  (ISO)
carbamazepine  (EXP)
carbon nanotube  (EXP,ISO)
carbonyl sulfide  (ISO)
cerium trichloride  (EXP)
chloroethene  (EXP)
chloroform  (ISO)
chloropicrin  (ISO)
chloroprene  (EXP)
chlorothalonil  (ISO)
choline  (EXP)
cisplatin  (EXP,ISO)
clozapine  (EXP)
cobalt dichloride  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
D-penicillamine  (ISO)
dantrolene  (EXP)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dichloroacetic acid  (EXP)
diclofenac  (EXP,ISO)
dicloxacillin  (EXP)
diethyl maleate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
doxorubicin  (EXP)
doxycycline  (EXP)
erythromycin estolate  (ISO)
ethanol  (ISO)
flavonoids  (ISO)
flucloxacillin  (EXP)
flutamide  (ISO)
folic acid  (EXP)
fragrance  (ISO)
gadolinium trichloride  (ISO)
gemfibrozil  (EXP)
genistein  (EXP,ISO)
glafenine  (ISO)
glucose  (ISO)
glyphosate  (EXP,ISO)
haloperidol  (EXP)
halothane  (EXP)
hexachlorobenzene  (ISO)
hydroquinone  (ISO)
ibuprofen  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
isobutanol  (ISO)
isoflurane  (EXP)
isoprenaline  (EXP,ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lidocaine  (EXP)
linalool  (ISO)
lipopolysaccharide  (EXP,ISO)
lovastatin  (EXP)
mancozeb  (EXP,ISO)
maneb  (EXP)
manganese(II) chloride  (ISO)
mebendazole  (ISO)
mercury dichloride  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
Miglitol  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (EXP)
nickel atom  (ISO)
nickel sulfate  (EXP)
nitrofen  (ISO)
olanzapine  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
phenacetin  (ISO)
phenobarbital  (ISO)
phenylhydrazine  (ISO)
phenytoin  (EXP)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pioglitazone  (EXP,ISO)
pirinixic acid  (EXP,ISO)
platycodin D  (EXP)
potassium bromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
primidone  (ISO)
progesterone  (EXP)
propanal  (ISO)
pyridaben  (EXP)
quartz  (ISO)
quinidine  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
ryanodine  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP,ISO)
SB 431542  (EXP)
sevoflurane  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
streptozocin  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
trichloroethene  (ISO)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
XL147  (EXP)
zinc atom  (EXP,ISO)
zinc(0)  (EXP,ISO)
zoledronic acid  (ISO)
zomepirac  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1373330   PMID:8645219   PMID:9920416   PMID:10349636   PMID:10395934   PMID:10399917   PMID:10438963   PMID:10610721   PMID:10632726   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11169745   PMID:11217851   PMID:12082614   PMID:12466851   PMID:12477932   PMID:12529407   PMID:12640137   PMID:12905486   PMID:12928412   PMID:15203200   PMID:15331440   PMID:15336958  
PMID:15489334   PMID:15642721   PMID:15778088   PMID:15953992   PMID:16114106   PMID:16141072   PMID:16141073   PMID:16452166   PMID:16602821   PMID:16814379   PMID:16920226   PMID:16938360  
PMID:16949565   PMID:16982811   PMID:17082650   PMID:17116754   PMID:17128264   PMID:17409015   PMID:17636430   PMID:17767165   PMID:18276893   PMID:18292562   PMID:18403730   PMID:18411294  
PMID:18452188   PMID:18606667   PMID:18689872   PMID:18714033   PMID:18802069   PMID:18809714   PMID:18820689   PMID:18832721   PMID:19402754   PMID:19620505   PMID:19656587   PMID:19670424  
PMID:19835955   PMID:20098622   PMID:20105291   PMID:20473308   PMID:20606421   PMID:20976233   PMID:21125321   PMID:21228116   PMID:21267068   PMID:21308349   PMID:21382888   PMID:21536666  
PMID:21677750   PMID:21857934   PMID:21873635   PMID:21930775   PMID:22016186   PMID:22143922   PMID:22144572   PMID:22219268   PMID:22308043   PMID:22318783   PMID:22470535   PMID:22577135  
PMID:22768176   PMID:22804476   PMID:22951731   PMID:22962574   PMID:23132931   PMID:23133376   PMID:23135911   PMID:23188082   PMID:23223301   PMID:23299480   PMID:23340821   PMID:23460744  
PMID:23616621   PMID:23663738   PMID:23744584   PMID:23754577   PMID:23874727   PMID:24086787   PMID:24216507   PMID:24332034   PMID:24333183   PMID:24338419   PMID:24391503   PMID:24436096  
PMID:24470119   PMID:24478092   PMID:24586443   PMID:24691441   PMID:24711518   PMID:24776746   PMID:24893171   PMID:25180294   PMID:25331529   PMID:25417112   PMID:25497086   PMID:25667306  
PMID:25759267   PMID:25792636   PMID:25792748   PMID:25820336   PMID:25879839   PMID:25892652   PMID:25911757   PMID:26079807   PMID:26360647   PMID:26371508   PMID:26385519   PMID:26404752  
PMID:26431492   PMID:26438362   PMID:26582948   PMID:26644517   PMID:26692467   PMID:26813343   PMID:26878232   PMID:26975724   PMID:27120339   PMID:27193261   PMID:27224926   PMID:27228163  
PMID:27301800   PMID:27369778   PMID:27388991   PMID:27573240   PMID:27668938   PMID:27942589   PMID:27993995   PMID:28074060   PMID:28092673   PMID:28137827   PMID:28459433   PMID:28498464  
PMID:28504650   PMID:28570273   PMID:28645160   PMID:28847516   PMID:28943329   PMID:29158436   PMID:29160692   PMID:29204146   PMID:29253495   PMID:29563178   PMID:29611822   PMID:29659256  
PMID:29679568   PMID:29720243   PMID:29746703   PMID:29902248   PMID:30025864   PMID:30056999   PMID:30586702   PMID:30737486   PMID:30753908   PMID:30906792   PMID:30943376   PMID:30976090  
PMID:31040394   PMID:31078118   PMID:31220272   PMID:31351425   PMID:31365870   PMID:31391467   PMID:31605018   PMID:31621496   PMID:31825833   PMID:31961866   PMID:31968244   PMID:32107497  
PMID:32134742   PMID:32149126   PMID:32202636   PMID:32243898   PMID:32325033   PMID:32434457   PMID:32449525   PMID:32694806   PMID:32805279   PMID:32854769   PMID:32878477   PMID:32918665  
PMID:33079539   PMID:33359632   PMID:33361205   PMID:33462187   PMID:33549095   PMID:33626479   PMID:33717058   PMID:33717200   PMID:34220829   PMID:34230949   PMID:34285336   PMID:34412663  
PMID:34516771   PMID:34562450   PMID:34743196   PMID:34890276   PMID:34905516  


Genomics

Comparative Map Data
S100a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,599,937 - 90,603,028 (-)NCBIGRCm39mm39
GRCm39 Ensembl390,599,939 - 90,603,028 (-)Ensembl
GRCm38390,692,630 - 90,695,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,692,632 - 90,695,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,496,555 - 90,499,613 (-)NCBIGRCm37mm9NCBIm37
MGSCv36390,778,560 - 90,781,618 (-)NCBImm8
Celera390,734,035 - 90,737,073 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.91NCBI
S100A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,357,854 - 153,361,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1153,357,854 - 153,361,023 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,330,330 - 153,333,499 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,596,954 - 151,600,127 (+)NCBINCBI36hg18NCBI36
Build 341150,143,402 - 150,146,572NCBI
Celera1126,401,585 - 126,404,758 (+)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1124,693,742 - 124,696,915 (+)NCBIHuRef
CHM1_11154,726,043 - 154,729,216 (+)NCBICHM1_1
S100a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22176,190,361 - 176,193,182 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2176,190,361 - 176,193,230 (-)Ensembl
Rnor_6.02190,097,436 - 190,100,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2190,097,554 - 190,100,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,531,410 - 209,534,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,985,466 - 182,988,147 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12182,935,571 - 182,938,253 (-)NCBI
Celera2170,123,110 - 170,125,791 (-)NCBICelera
Cytogenetic Map2q34NCBI
S100a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495559290,647 - 93,842 (-)NCBIChiLan1.0ChiLan1.0
S100A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11132,338,246 - 132,341,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,338,246 - 132,341,497 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01128,709,175 - 128,712,461 (+)NCBIMhudiblu_PPA_v0panPan3
S100A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,566,993 - 43,570,074 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha743,059,875 - 43,062,952 (-)NCBI
ROS_Cfam_1.0743,516,666 - 43,519,742 (-)NCBI
UMICH_Zoey_3.1743,218,969 - 43,222,044 (-)NCBI
UNSW_CanFamBas_1.0743,272,875 - 43,275,945 (-)NCBI
UU_Cfam_GSD_1.0743,556,431 - 43,559,507 (-)NCBI
S100a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,197,707 - 24,200,267 (+)NCBI
SpeTri2.0NW_0049365803,228,097 - 3,230,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,236,114 - 96,238,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24105,063,477 - 105,066,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,391,965 - 10,395,216 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,391,934 - 10,394,720 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,860,727 - 9,863,974 (-)NCBIVero_WHO_p1.0
S100a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885767,455 - 770,023 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
S100a9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1-F2UniSTS
cM Map343.6UniSTS
AW546964  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,692,700 - 90,692,819UniSTSGRCm38
MGSCv37390,496,622 - 90,496,741UniSTSGRCm37
Celera390,734,102 - 90,734,221UniSTS
Cytogenetic Map3F1-F2UniSTS
Whitehead/MRC_RH31014.5UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:92
Interacting mature miRNAs:95
Transcripts:ENSMUST00000069960, ENSMUST00000117167
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000069960   ⟹   ENSMUSP00000070842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,599,939 - 90,603,018 (-)Ensembl
GRCm38.p6 Ensembl390,692,632 - 90,695,711 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117167   ⟹   ENSMUSP00000112843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,599,939 - 90,603,028 (-)Ensembl
GRCm38.p6 Ensembl390,692,632 - 90,695,721 (-)Ensembl
RefSeq Acc Id: NM_001281852   ⟹   NP_001268781
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,599,937 - 90,603,028 (-)NCBI
GRCm38390,692,630 - 90,695,721 (-)NCBI
Celera390,734,032 - 90,737,103 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009114   ⟹   NP_033140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,599,937 - 90,603,028 (-)NCBI
GRCm38390,692,630 - 90,695,721 (-)NCBI
MGSCv37390,496,555 - 90,499,613 (-)RGD
Celera390,734,032 - 90,737,103 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033140   ⟸   NM_009114
- UniProtKB: P31725 (UniProtKB/Swiss-Prot),   Q3UP42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268781   ⟸   NM_001281852
- UniProtKB: P31725 (UniProtKB/Swiss-Prot),   Q3UP42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000070842   ⟸   ENSMUST00000069960
RefSeq Acc Id: ENSMUSP00000112843   ⟸   ENSMUST00000117167
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P31725-F1-model_v2 AlphaFold P31725 1-113 view protein structure

Promoters
RGD ID:6834407
Promoter ID:MM_KWN:35056
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Spleen
Transcripts:ENSMUST00000117167,   OTTMUST00000065991
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36390,499,211 - 90,499,711 (-)MPROMDB
RGD ID:6881372
Promoter ID:EPDNEW_M4137
Type:multiple initiation site
Name:S100a9_1
Description:Mus musculus S100 calcium binding protein A9 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,695,691 - 90,695,751EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1338947 AgrOrtholog
Ensembl Genes ENSMUSG00000056071 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000070842 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112843 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000069960 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000117167 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20202 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1338947 ENTREZGENE
NCBI Gene 20202 ENTREZGENE
Pfam S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB S100A9 RGD
PhenoGen S100a9 PhenoGen
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_CABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P31725 ENTREZGENE
  Q3UP42 ENTREZGENE, UniProtKB/TrEMBL
  S10A9_MOUSE UniProtKB/Swiss-Prot