Rab10 (RAB10, member RAS oncogene family)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Rab10 (RAB10, member RAS oncogene family) Mus musculus

Analyze

Symbol:

Rab10

Name:

RAB10, member RAS oncogene family

RGD ID:

733173

MGI Page

MGI

Description:

Is expressed in embryo. Orthologous to human RAB10 (RAB10, member RAS oncogene family); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

AW107754; ras-related protein Rab-10

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB10 (RAB10, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rab10 (RAB10, member RAS oncogene family)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rab10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RAB10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab10 (RAB10, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rab10 (RAB10, member RAS oncogene family)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	RAB10 (RAB10, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	rab10 (RAB10, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Caenorhabditis elegans (roundworm):	rab-10	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Drosophila melanogaster (fruit fly):	Rab10	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	SEC4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	3,297,428 - 3,359,969 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	12	3,297,428 - 3,359,969 (-)	Ensembl
GRCm38	12	3,247,428 - 3,309,969 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	3,247,428 - 3,309,969 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	3,247,428 - 3,309,969 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	3,247,726 - 3,309,939 (-)	NCBI			mm8
Celera	12	3,174,851 - 3,237,418 (-)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	1.71	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2,4-dinitrotoluene (ISO)

2-methylcholine (ISO)

3H-1,2-dithiole-3-thione (ISO)

4-amino-2,6-dinitrotoluene (ISO)

aflatoxin B1 (EXP,ISO)

ammonium chloride (ISO)

Aroclor 1254 (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (ISO)

carbon nanotube (EXP)

carboplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dimethylarsinic acid (ISO)

doxorubicin (ISO)

ethanol (EXP,ISO)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP)

gentamycin (ISO)

haloperidol (ISO)

hydrogen peroxide (ISO)

hypochlorous acid (EXP)

methyl methanesulfonate (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

resveratrol (EXP)

sodium arsenate (EXP)

sodium arsenite (EXP,ISO)

sodium fluoride (EXP)

sulforaphane (ISO)

tetrachloromethane (EXP)

trichloroethene (ISO)

trimellitic anhydride (EXP)

valproic acid (ISO)

vinclozolin (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation (ISO)

axonogenesis (ISO)

cellular response to antibiotic (ISO)

cellular response to insulin stimulus (IBA,IMP)

endoplasmic reticulum tubular network organization (ISO)

endosomal transport (ISO)

establishment of neuroblast polarity (ISO)

establishment of protein localization to endoplasmic reticulum membrane (ISO)

establishment of protein localization to membrane (ISO)

Golgi to plasma membrane protein transport (ISO)

Golgi to plasma membrane transport (ISO)

intracellular protein transport (TAS)

polarized epithelial cell differentiation (ISO)

protein localization to basolateral plasma membrane (ISO)

protein localization to plasma membrane (IBA,IMP)

protein secretion (IBA)

protein transport (IEA)

regulated exocytosis (ISO)

regulation of exocytosis (IBA)

vesicle docking involved in exocytosis (IBA)

vesicle-mediated transport (IMP)

Cellular Component

anchored component of synaptic vesicle membrane (ISO)

cell projection (IEA)

cilium (IDA,ISO)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (TAS)

cytoskeleton (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (ISO)

endoplasmic reticulum tubular network (ISO)

endosome (IBA,ISO)

exocyst (ISO)

exocytic vesicle (ISO)

Golgi apparatus (IBA,IDA,ISO)

insulin-responsive compartment (IBA,ISO)

membrane (ISO)

perinuclear region of cytoplasm (IDA,ISO)

plasma membrane (IBA,ISO)

recycling endosome (IBA,ISO)

synaptic vesicle (IBA)

trans-Golgi network (ISO)

Molecular Function

GDP binding (ISO)

GDP-dissociation inhibitor binding (ISO)

GTP binding (ISO)

GTPase activity (IEA)

hydrolase activity (IEA)

myosin V binding (ISO)

nucleotide binding (IEA)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

insulin responsive facilitative sugar transporter mediated glucose transport pathway (ISO,TAS)

Rab family mediated signaling pathway (ISO,TAS)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal auditory brainstem response (IEA)

abnormal cell morphology (IAGP)

abnormal cell nucleus morphology (IAGP)

abnormal extraembryonic ectoderm morphology (IAGP)

abnormal extraembryonic tissue morphology (IAGP)

abnormal germ layer development (IAGP)

absent amniotic cavity (IAGP)

absent ectoplacental cavity (IAGP)

absent extraembryonic coelom (IAGP)

decreased adipocyte glucose uptake (IAGP)

decreased cell proliferation (IAGP)

decreased embryo size (IAGP)

decreased prepulse inhibition (IEA)

embryonic growth arrest (IAGP)

embryonic lethality between somite formation and embryo turning, complete penetrance (IAGP)

embryonic lethality prior to organogenesis (IEA)

failure of primitive streak formation (IAGP)

increased circulating insulin level (IAGP)

increased hepatic glucose production (IAGP)

increased startle reflex (IEA)

insulin resistance (IAGP)

iris synechia (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated


1.	Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
2.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3.	Klip A, etal., Am J Physiol Cell Physiol. 2014 May 15;306(10):C879-86. doi: 10.1152/ajpcell.00069.2014. Epub 2014 Mar 5.
4.	Larance M, etal., Mol Endocrinol. 2008 Feb;22(2):226-33. Epub 2007 Aug 23.
5.	MGD and Homologene mouse data transfer
6.	MGD data from the GO Consortium
7.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8.	RGD automated import pipeline for gene-chemical interactions
9.	Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
10.	Zaid H, etal., Biochem J. 2008 Jul 15;413(2):201-15.

Additional References at PubMed

PMID:8825628	PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11042173	PMID:11076861	PMID:11773082	PMID:11856727	PMID:12477932	PMID:12520002	PMID:12578829
PMID:14610273	PMID:15489334	PMID:15782199	PMID:16141072	PMID:16141073	PMID:16512683	PMID:16923123	PMID:17403373	PMID:18076383	PMID:18799693	PMID:19570034	PMID:20576682
PMID:20643919	PMID:21327095	PMID:21454697	PMID:21677750	PMID:21873635	PMID:22908308	PMID:23375831	PMID:23804653	PMID:24213529	PMID:25860786	PMID:26299925	PMID:26527681
PMID:27207531	PMID:27354378	PMID:27507650	PMID:28028537	PMID:28132130	PMID:28378742	PMID:28671696	PMID:28706196	PMID:30068389	PMID:30209220	PMID:30333137	PMID:30713523
PMID:32325033

Genomics

Comparative Map Data

Rab10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	3,297,428 - 3,359,969 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	12	3,297,428 - 3,359,969 (-)	Ensembl
GRCm38	12	3,247,428 - 3,309,969 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	3,247,428 - 3,309,969 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	3,247,428 - 3,309,969 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	3,247,726 - 3,309,939 (-)	NCBI			mm8
Celera	12	3,174,851 - 3,237,418 (-)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	1.71	NCBI

RAB10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	26,034,084 - 26,137,454 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	26,034,084 - 26,137,454 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	26,256,953 - 26,360,323 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	26,110,478 - 26,213,782 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	26,168,624 - 26,271,929	NCBI
Celera	2	26,097,002 - 26,200,567 (+)	NCBI
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	25,993,019 - 26,096,921 (+)	NCBI		HuRef
CHM1_1	2	26,186,807 - 26,290,405 (+)	NCBI		CHM1_1

Rab10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	26,267,081 - 26,319,739 (-)	NCBI
Rnor_6.0 Ensembl	6	27,668,403 - 27,721,120 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	27,668,387 - 27,721,120 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	37,479,058 - 37,531,622 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	6	26,260,312 - 26,297,639	NCBI
Celera	6	25,743,962 - 25,796,212 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

Rab10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	8,057,235 - 8,138,983 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	8,057,235 - 8,138,983 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	26,125,984 - 26,228,505 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	26,125,985 - 26,228,505 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	26,034,046 - 26,132,658 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RAB10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	20,181,363 - 20,264,927 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	20,181,363 - 20,264,927 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rab10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936493	6,263,870 - 6,351,327 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	112,828,879 - 112,924,269 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	112,842,190 - 112,924,188 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	119,827,428 - 119,909,414 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB10
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	81,508,800 - 81,618,172 (-)	NCBI
ChlSab1.1 Ensembl	14	81,507,031 - 81,617,983 (-)	Ensembl

Rab10
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	8,212,401 - 8,294,307 (+)	NCBI

Position Markers

AW107754

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	3,248,749 - 3,248,868	UniSTS	GRCm38
MGSCv37	12	3,248,749 - 3,248,868	UniSTS	GRCm37
Celera	12	3,176,172 - 3,176,291	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
Whitehead/MRC_RH	12	24.66	UniSTS

BI283356

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	6,450,079 - 6,450,271	UniSTS	GRCm38
GRCm38	12	3,247,830 - 3,248,022	UniSTS	GRCm38
MGSCv37	12	3,247,830 - 3,248,022	UniSTS	GRCm37
MGSCv37	4	6,377,226 - 6,377,418	UniSTS	GRCm37
Celera	12	3,175,253 - 3,175,445	UniSTS
Celera	4	6,367,444 - 6,367,636	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
Cytogenetic Map	4	A1	UniSTS

RH126769

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	3,258,040 - 3,258,288	UniSTS	GRCm38
MGSCv37	12	3,258,040 - 3,258,288	UniSTS	GRCm37
Celera	12	3,185,463 - 3,185,711	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
cM Map	12		UniSTS
cM Map	1	63.5	UniSTS
cM Map	UN		UniSTS
Whitehead/MRC_RH	12	19.7	UniSTS

RAB10_1045

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	3,247,451 - 3,248,340	UniSTS	GRCm38
MGSCv37	12	3,247,451 - 3,248,340	UniSTS	GRCm37
Celera	12	3,174,874 - 3,175,763	UniSTS
Cytogenetic Map	12	A1.1	UniSTS

AU048675

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	3,303,886 - 3,304,081	UniSTS	GRCm38
MGSCv37	12	3,303,886 - 3,304,081	UniSTS	GRCm37
Celera	12	3,231,335 - 3,231,530	UniSTS
Cytogenetic Map	12	A1.1	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301393	Dyscalc3_m	dystrophic cardiac calcinosis 3 (mouse)			Not determined		12	1	22368579	Mouse
1301143	Skull17_m	skull morphology 17 (mouse)			Not determined		12	1	22368579	Mouse
10402496	Lmr22_m	leishmaniasis resistance 22 (mouse)			Not determined		12	1	22368579	Mouse
11039525	Tbbr2_m	Trypanosoma brucei brucei response 2 (mouse)					12	1	22368579	Mouse
1301655	Bmd12_m	bone mineral density 12 (mouse)			Not determined		12	1	24612697	Mouse
1357519	Vtbt12_m	vertebral trabecular bone trait 12 (mouse)			Not determined		12	1	24612697	Mouse
4141296	Femwf9_m	femur work to failure 9 (mouse)			Not determined			1	27870733	Mouse
4141112	Tglq2a_m	triglyceride QTL 2a (mouse)			Not determined		12	1	27870733	Mouse
4141436	Chldq7_m	cholesterol and HDL QTL 7 (mouse)			Not determined		12	1	27870733	Mouse
9850128	Tglq5_m	triglyceride QTL 5 (mouse)			Not determined		12	1	27870733	Mouse
12910983	Pifs1_m	peptide-induced fatal syndrome 1 (mouse)					12	1	30383077	Mouse
1301925	Ath6_m	atherosclerosis 6 (mouse)			Not determined		12	1	32708755	Mouse
1301207	Circp1_m	circadian photosensitivity 1 (mouse)			Not determined		12	1	33380338	Mouse
4141660	Nbwa1_m	NZB and NZW autoimmunity 1 (mouse)			Not determined		12	290133	34290301	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	922
Count of miRNA genes:	498
Interacting mature miRNAs:	600
Transcripts:	ENSMUST00000021001
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_016676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB232604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC159283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF035646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK008725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK087964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK190935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK194584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK194711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK194780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK196947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK212462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC052735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC056374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ092612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT010394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000021001 ⟹ ENSMUSP00000021001

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	12	3,247,428 - 3,309,969 (-)	Ensembl

RefSeq Acc Id:

NM_016676 ⟹ NP_057885

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	3,297,428 - 3,359,969 (-)	NCBI
GRCm38	12	3,247,428 - 3,309,969 (-)	ENTREZGENE
MGSCv37	12	3,247,428 - 3,309,969 (-)	RGD
Celera	12	3,174,851 - 3,237,418 (-)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

GTCCTTGCGTGCGTCTCAGGCTGCGCGCACGCCGGCGTGAGAGGGCACGGGGAAAAAGGTGGCT
CTGGCCGGGGCGGCTCTGTTTCCTGGGGTTATGTAGCAGGGCTTGTCGGCTCGCGAGACCTCCC
GCTGCCCTCGCCCGTGTCCTAGCGCGGGGTTTCTGCTCCGGGCGGAGGCCGTGTTCAAGCCCGC
CGCGCTCCCTCGACGTAGAGCTCGCTCGTCCGCCCGTGGGAGCGTCCCGGCCGAGCTGCGCTGA
GGGGGGAGGGGAGGCCATTTTGTCCCGACCGACTCCCCGGAACCGGGCGGAGCGGCTGGGAGAG
GCTGCGGAGCCGCGGGCGCCGCCCCTCGGAGGCACGGGCGCCGCCACCGTCGGGGCTTCCTCGA
CGAGGCCGTTCGGAAGGTCTCCTGCTCCGTCTCGAGAGCTGCTTTCTCCTTCCGCACACGCTAC
CCGGCTGCTGCGGCCCCAGAACGCCCGGGTGAGGAGTTGGTTGTAGTGAGCAGTTCCGATCCCT
TGGGGCTACCGGCGGCGAGCGCCCGAGCCGCTCCTCCCAATGGCGAAGAAGACGTACGACCTGC
TTTTCAAGCTGCTCCTGATCGGGGACTCGGGAGTGGGCAAGACCTGCGTCCTTTTTCGTTTTTC
GGACGATGCCTTCAATACCACCTTTATTTCCACCATAGGAATAGACTTTAAGATCAAAACAGTG
GAACTACAAGGAAAGAAGATCAAGCTACAGATATGGGACACAGCAGGCCAGGAGCGATTTCACA
CCATCACAACCTCCTACTACAGAGGAGCAATGGGCATCATGCTAGTGTATGACATCACCAACGG
TAAAAGCTTTGAGAACATCAGCAAGTGGCTTAGAAACATAGATGAGCATGCCAATGAAGATGTG
GAAAGAATGTTACTAGGGAACAAGTGTGACATGGACGACAAGAGAGTTGTACCGAAAGGCAAAG
GAGAACAGATTGCAAGGGAGCATGGTATTAGGTTTTTTGAGACTAGTGCAAAAGCAAATATAAA
CATCGAAAAGGCGTTCCTCACATTAGCTGAAGACATCCTCCGAAAGACCCCTGTAAAAGAACCC
AACAGTGAAAACGTAGATATCAGCAGTGGAGGAGGCGTGACGGGCTGGAAGAGCAAGTGCTGCT
GAGTGCTCTCCTGTCCATCTGCTGCCATCCACCATCCGGTTCTCTTCTTGCTGCAAAATAAAAC
ACTCTGTCCATTTTTAACTCTAAACAGATATTTTTGTTTCTCATCTTAACTATTCAATCCACCT
ATTTTATTTGTTCTTTCATCTGTGACTGCTTGCGGACTATTATAATTTTCTTCAAACAAACAAA
CAAAAATGTATAGAGAAATCATGTCTGTGAGTTCATTTTGAGATTTACTTGCTCACTCAGCCCT
GCACTTCAGTTGTATTATAGTCCAGTTCTTATCAACATTAAACTAGAGCAATCATTTCAACTAT
TCTGCAAATTGTATAAGAATAAAAGTTAGAATTAACAATTTTATTTTGTACAACAGTGGGATTT
TCTGTCATGAATAATGTGCTTGATCCCTATAATCTATAGACGTGATAGCAAAGAAACAAAAGCC
AGGAAAACACTCATTTTCGCCTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAA
AGGAACGTCTTTGGTTTTCTTTTTTTGTTTTGGTGGAAGCATGAGCAGGAGACATTTCATCCCA
GCATAAACTCCTTCAGATGCTTGTGGTTTGCTTGGCTGTATCTTTCACGATAGTTAACTGAGGA
CAAAGGGTAATGCAGAAGTGATATTTGATTTCCATTCTCATTCCCAGTGGCCTTGATATTTAAA
CTGATTCCTGCCACCAGGTCCTTGGGCCACCCTGTCCCTGCGTCTCATCTTTCTGCATGCTGCT
TTGTTTGCCCCTACTACTCCTGGTGTGAGTTATTTAAAGATGAAAGGTTTGTCAAGTTTAACAT
ACAGCACTGATTTTACCTTGCTAAGTAAACAGAAAGATAAATTCTAACTGCCTATTAACTGTCA
GTTAATTCGGGTCAGCCCCTCATTTACTCTCTCCCCAAACCTGCCCCGCTGTTGGCCTTCTGTC
CCCCACCCCTTCCTGTCTATCCATGGAGTTTATGAAATGGAAGAGTTAATTGCATGCACTAGTG
TTTGGAGGGTGTTGTGGCTTGTCTTTCTAATTAGGTATATATCCTATTCACTTTCCTAGAGTAA
ACCTCCTAACCTGGATTTGACTAGTCTCCATTATGCCAGCTCCTCTGGCAGTTCGGCAGCCCAG
GAAAGACTGGTTTTAAAAAAGAGCAAGAAGGAGTGGGTCTTAGTAGCGTTTGTCAAATGTATTG
AGATTTGGCCTTTGAAGAACACATTTGGTATTAAGTTGTCTTTACTGTAAGATTTAGAAATGCA
TTATAATATTATTAATTTCAAGTCCTATCTTTACATCCTCTCAGAAAACTTCTGATACCATGAA
TATTTTAAAAAAGAAAAAGGACCGCAAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGT
CTGACCCGCCCTTCTCTCCCCTTTCTAGTTTGGCTTCATTGCTTCTCATTAGGATAGGGTAGGC
TAAGTTCCCTATGCTGCTAGCATCCTAAGATGATACCTTTGTGGAAATAATTGTGAATAGCATG
ATTCATTTCAAGCAGAGGCTGAGTTTAGGACAGCAGCTACCATTGAGAAGATTTCTGTGACATG
CATTTTAATGACCTCTTGGCTCACATAAACAATATAGGGACATATCTGCTAAAAGAACCCATGA
ATTTTTCAGATAGTGTCCCACAGACAATTCTACATGCCTCACTGGTGGCTCTTAGGGTTTCTTC
CCTCACTTGACTTTATCATTGTTTACTAGTAAAAAGCAGCATTGCCAAATAACCCCTGATTTTC
CACTATGAAAAATGCGATGTGTAAGCTTTTAAAGTTGTAGGTTAAACCTCCTGTTGTTATCTTT
GCTGTTTGTGTTGCTTCCTTCTATCTGGAATGTGGTAGCCACCTCTTTAAACTTTTTTTAACCC
TTAATTCAGTGACTTAAGGTTTGGAGATACACACTGGGATTTTGGCTAACAGACTGACAGTTTT
GTTGTTTGCATAATTATAATCGACATTGTACAGAGAAAGGATAAGGCTACCTTTGTTAAATCTG
CACTTTCTGAATATCAAAAAAAAAAACAAAAAAAACAAAAAAACCCACCAAAAGGGAAATGGAA
GTATAAATCAATTTTTGTATAATCTGTTTGAAACCTGAGTTTTATTTGCTTACTATTAGGGCTT
TGTCCCCTTTCTGTAAGTCTCTTGGGATCCTGTGTAGGAGCTGTTCTCATTAAACATCAACAGT
TCAGTCCATTCTCTGGTACTAGCTACAAATTCGGTTTCATACTCTACTTAACAATTTAAATAAA
CTGAAATATTTCTAGATGGTCTACTTCTGTTCATATAAAAACAAACCTGATTTCCAAAAAAAAA
AAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_057885	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC29313	(Get FASTA)	NCBI Sequence Viewer
	AAH56374	(Get FASTA)	NCBI Sequence Viewer
	BAB25858	(Get FASTA)	NCBI Sequence Viewer
	BAC25878	(Get FASTA)	NCBI Sequence Viewer
	BAC40062	(Get FASTA)	NCBI Sequence Viewer
	BAE22371	(Get FASTA)	NCBI Sequence Viewer
	BAE27109	(Get FASTA)	NCBI Sequence Viewer
	BAE29464	(Get FASTA)	NCBI Sequence Viewer
	BAE29515	(Get FASTA)	NCBI Sequence Viewer
	BAE29855	(Get FASTA)	NCBI Sequence Viewer
	BAE30429	(Get FASTA)	NCBI Sequence Viewer
	BAE31896	(Get FASTA)	NCBI Sequence Viewer
	BAE31904	(Get FASTA)	NCBI Sequence Viewer
	BAE35038	(Get FASTA)	NCBI Sequence Viewer
	BAE35423	(Get FASTA)	NCBI Sequence Viewer
	BAE35538	(Get FASTA)	NCBI Sequence Viewer
	BAE36116	(Get FASTA)	NCBI Sequence Viewer
	BAE40259	(Get FASTA)	NCBI Sequence Viewer
	BAF02866	(Get FASTA)	NCBI Sequence Viewer
	CAJ18601	(Get FASTA)	NCBI Sequence Viewer
	EDL01402	(Get FASTA)	NCBI Sequence Viewer
	P61027	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_057885 ⟸ NM_016676

- UniProtKB:

P61027 (UniProtKB/Swiss-Prot), Q4FJL0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWD
TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD
KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGGV
TGWKSKCC

hide sequence

RefSeq Acc Id:

ENSMUSP00000021001 ⟸ ENSMUST00000021001

Promoters

RGD ID:

6823305

Promoter ID:

MM_KWN:11050

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_016676

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	12	3,309,436 - 3,310,337 (-)	MPROMDB

RGD ID:

8677800

Promoter ID:

EPDNEW_M16931

Type:

initiation region

Name:

Rab10_2

Description:

Mus musculus RAB10, member RAS oncogene family , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M16932

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	3,309,578 - 3,309,638	EPDNEW

RGD ID:

8677802

Promoter ID:

EPDNEW_M16932

Type:

initiation region

Name:

Rab10_1

Description:

Mus musculus RAB10, member RAS oncogene family , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M16931

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	3,309,952 - 3,310,012	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:105066	AgrOrtholog
Ensembl Genes	ENSMUSG00000020671	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000021001	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000021001	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:19325	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:105066	ENTREZGENE
NCBI Gene	19325	ENTREZGENE
Pfam	Ras	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rab10	PhenoGen
PROSITE	RAB	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	small_GTP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	P61027	ENTREZGENE
	Q3U621_MOUSE	UniProtKB/TrEMBL
	Q4FJL0	ENTREZGENE, UniProtKB/TrEMBL
	RAB10_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	O88386	UniProtKB/Swiss-Prot
	Q9D7X6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations