Rab10 (RAB10, member RAS oncogene family) - Rat Genome Database

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Gene: Rab10 (RAB10, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab10
Name: RAB10, member RAS oncogene family
RGD ID: 733173
MGI Page MGI
Description: Predicted to enable GDP-dissociation inhibitor binding activity; guanyl ribonucleotide binding activity; and myosin V binding activity. Involved in cellular response to insulin stimulus; protein localization to plasma membrane; and vesicle-mediated transport. Located in Golgi apparatus; cilium; and perinuclear region of cytoplasm. Is expressed in several structures, including brain; liver; and small intestine. Orthologous to human RAB10 (RAB10, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW107754; ras-related protein Rab-10
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,297,428 - 3,359,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl123,297,428 - 3,359,969 (-)EnsemblGRCm39 Ensembl
GRCm38123,247,428 - 3,309,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,247,428 - 3,309,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv37123,247,428 - 3,309,969 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36123,247,726 - 3,309,939 (-)NCBIMGSCv36mm8
Celera123,174,851 - 3,237,418 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
aconitine  (ISO)
acrylamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
carboplatin  (ISO)
chlorpyrifos  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (ISO)
dimethylarsinic acid  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (EXP,ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
hypochlorous acid  (EXP)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
nickel atom  (ISO)
nitrates  (EXP)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
permethrin  (ISO)
resveratrol  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rab proteins in endocytosis and Glut4 trafficking. Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Signal transduction meets vesicle traffic: the software and hardware of GLUT4 translocation. Klip A, etal., Am J Physiol Cell Physiol. 2014 May 15;306(10):C879-86. doi: 10.1152/ajpcell.00069.2014. Epub 2014 Mar 5.
4. The GLUT4 code. Larance M, etal., Mol Endocrinol. 2008 Feb;22(2):226-33. Epub 2007 Aug 23.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Hepatic interferon regulatory factor 8 expression mediates liver ischemia/reperfusion injury in mice. Shi G, etal., Biochem Pharmacol. 2021 Oct;192:114728. doi: 10.1016/j.bcp.2021.114728. Epub 2021 Aug 13.
10. GLUT4 translocation: the last 200 nanometers. Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
11. Insulin action on glucose transporters through molecular switches, tracks and tethers. Zaid H, etal., Biochem J. 2008 Jul 15;413(2):201-15.
Additional References at PubMed
PMID:8825628   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11042173   PMID:11076861   PMID:11773082   PMID:11856727   PMID:12477932   PMID:12520002   PMID:12578829  
PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16512683   PMID:16923123   PMID:17403373   PMID:18076383   PMID:18799693   PMID:19570034   PMID:20576682  
PMID:20643919   PMID:21327095   PMID:21454697   PMID:21677750   PMID:21873635   PMID:22794259   PMID:22908308   PMID:23375831   PMID:23804653   PMID:24213529   PMID:25860786   PMID:26299925  
PMID:26527681   PMID:27207531   PMID:27354378   PMID:27507650   PMID:28028537   PMID:28132130   PMID:28378742   PMID:28671696   PMID:28706196   PMID:29199018   PMID:29382714   PMID:30068389  
PMID:30209220   PMID:30333137   PMID:30550785   PMID:30713523   PMID:32325033   PMID:32554809   PMID:32853409   PMID:33105882   PMID:33175605   PMID:33956260   PMID:34135890   PMID:34303022  
PMID:34321999   PMID:36309171   PMID:36669576   PMID:36719382   PMID:36808153   PMID:36897066   PMID:37042948   PMID:37142655   PMID:37156612   PMID:38110990   PMID:38355793  


Genomics

Comparative Map Data
Rab10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,297,428 - 3,359,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl123,297,428 - 3,359,969 (-)EnsemblGRCm39 Ensembl
GRCm38123,247,428 - 3,309,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,247,428 - 3,309,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv37123,247,428 - 3,309,969 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36123,247,726 - 3,309,939 (-)NCBIMGSCv36mm8
Celera123,174,851 - 3,237,418 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.71NCBI
RAB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,033,285 - 26,137,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,034,084 - 26,137,454 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,256,953 - 26,360,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,110,478 - 26,213,782 (+)NCBINCBI36Build 36hg18NCBI36
Build 34226,168,624 - 26,271,929NCBI
Celera226,097,002 - 26,200,567 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef225,993,019 - 26,096,921 (+)NCBIHuRef
CHM1_1226,186,807 - 26,290,405 (+)NCBICHM1_1
T2T-CHM13v2.0226,069,400 - 26,172,749 (+)NCBIT2T-CHM13v2.0
Rab10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,974,858 - 32,039,554 (-)NCBIGRCr8
mRatBN7.2626,267,081 - 26,319,739 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl626,266,859 - 26,320,193 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,559,705 - 26,612,364 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,875,588 - 26,928,242 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0626,353,848 - 26,406,629 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,668,387 - 27,721,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,668,403 - 27,721,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,479,058 - 37,531,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1626,260,312 - 26,297,639NCBI
Celera625,743,962 - 25,796,212 (-)NCBICelera
Cytogenetic Map6q14NCBI
Rab10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,057,235 - 8,138,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,057,235 - 8,138,983 (+)NCBIChiLan1.0ChiLan1.0
RAB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212100,381,221 - 100,485,143 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A100,385,189 - 100,488,306 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,034,046 - 26,132,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,125,984 - 26,228,505 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,125,985 - 26,228,505 (+)Ensemblpanpan1.1panPan2
RAB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,181,363 - 20,264,927 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,181,363 - 20,264,927 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,077,187 - 20,160,857 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,503,635 - 20,587,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,503,607 - 20,589,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,190,180 - 20,274,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,200,321 - 20,284,230 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,247,131 - 20,331,947 (+)NCBIUU_Cfam_GSD_1.0
Rab10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,488,453 - 64,575,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364936,263,863 - 6,351,327 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364936,263,870 - 6,351,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,829,137 - 112,924,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,842,190 - 112,924,188 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,827,428 - 119,909,414 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,508,800 - 81,618,172 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,507,031 - 81,617,983 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,540,276 - 30,649,087 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,212,355 - 8,294,423 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,212,401 - 8,294,307 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab10
1261 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:922
Count of miRNA genes:498
Interacting mature miRNAs:600
Transcripts:ENSMUST00000021001
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse

Markers in Region
AW107754  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38123,248,749 - 3,248,868UniSTSGRCm38
MGSCv37123,248,749 - 3,248,868UniSTSGRCm37
Celera123,176,172 - 3,176,291UniSTS
Cytogenetic Map12A1.1UniSTS
Whitehead/MRC_RH1224.66UniSTS
BI283356  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3846,450,079 - 6,450,271UniSTSGRCm38
GRCm38123,247,830 - 3,248,022UniSTSGRCm38
MGSCv37123,247,830 - 3,248,022UniSTSGRCm37
MGSCv3746,377,226 - 6,377,418UniSTSGRCm37
Celera123,175,253 - 3,175,445UniSTS
Celera46,367,444 - 6,367,636UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map4A1UniSTS
RH126769  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38123,258,040 - 3,258,288UniSTSGRCm38
MGSCv37123,258,040 - 3,258,288UniSTSGRCm37
Celera123,185,463 - 3,185,711UniSTS
Cytogenetic Map12A1.1UniSTS
cM Map12 UniSTS
cM Map163.5UniSTS
cM MapUN UniSTS
Whitehead/MRC_RH1219.7UniSTS
RAB10_1045  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38123,247,451 - 3,248,340UniSTSGRCm38
MGSCv37123,247,451 - 3,248,340UniSTSGRCm37
Celera123,174,874 - 3,175,763UniSTS
Cytogenetic Map12A1.1UniSTS
AU048675  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38123,303,886 - 3,304,081UniSTSGRCm38
MGSCv37123,303,886 - 3,304,081UniSTSGRCm37
Celera123,231,335 - 3,231,530UniSTS
Cytogenetic Map12A1.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ092612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000021001   ⟹   ENSMUSP00000021001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl123,297,428 - 3,359,969 (-)Ensembl
GRCm38.p6 Ensembl123,247,428 - 3,309,969 (-)Ensembl
RefSeq Acc Id: NM_016676   ⟹   NP_057885
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39123,297,428 - 3,359,969 (-)NCBI
GRCm38123,247,428 - 3,309,969 (-)ENTREZGENE
MGSCv37123,247,428 - 3,309,969 (-)RGD
Celera123,174,851 - 3,237,418 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_057885   ⟸   NM_016676
- UniProtKB: P61027 (UniProtKB/Swiss-Prot),   Q3U621 (UniProtKB/TrEMBL),   Q4FJL0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000021001   ⟸   ENSMUST00000021001

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61027-F1-model_v2 AlphaFold P61027 1-200 view protein structure

Promoters
RGD ID:6823305
Promoter ID:MM_KWN:11050
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_016676
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36123,309,436 - 3,310,337 (-)MPROMDB
RGD ID:8677800
Promoter ID:EPDNEW_M16931
Type:initiation region
Name:Rab10_2
Description:Mus musculus RAB10, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16932  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38123,309,578 - 3,309,638EPDNEW
RGD ID:8677802
Promoter ID:EPDNEW_M16932
Type:initiation region
Name:Rab10_1
Description:Mus musculus RAB10, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16931  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38123,309,952 - 3,310,012EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105066 AgrOrtholog
Ensembl Genes ENSMUSG00000020671 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021001 ENTREZGENE
  ENSMUST00000021001.10 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase_Rab UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19325 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:105066 ENTREZGENE
NCBI Gene 19325 ENTREZGENE
PANTHER LD44762P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab10 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P61027 ENTREZGENE
  Q3U621 ENTREZGENE, UniProtKB/TrEMBL
  Q4FJL0 ENTREZGENE, UniProtKB/TrEMBL
  RAB10_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O88386 UniProtKB/Swiss-Prot
  Q9D7X6 UniProtKB/Swiss-Prot