Psmb1 (proteasome (prosome, macropain) subunit, beta type 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Psmb1 (proteasome (prosome, macropain) subunit, beta type 1) Mus musculus
Analyze
Symbol: Psmb1
Name: proteasome (prosome, macropain) subunit, beta type 1
RGD ID: 733155
MGI Page MGI
Description: Predicted to be involved in proteolysis involved in protein catabolic process. Part of proteasome core complex. Is expressed in central nervous system; dorsal root ganglion; integumental system; rib; and sensory organ. Orthologous to human PSMB1 (proteasome 20S subunit beta 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AA409053; C81484; component C5 of proteasome; Lmp; Lmpc5; macropain subunit C5; multicatalytic endopeptidase complex subunit C5; proteasome beta-subunit C5; proteasome component C5; proteasome gamma chain; proteasome subunit beta type-1; proteasome subunit C5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14830   Gm19076  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,695,983 - 15,718,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,695,283 - 15,720,013 (-)EnsemblGRCm39 Ensembl
GRCm381715,475,721 - 15,498,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,475,021 - 15,499,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv371715,612,685 - 15,635,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361715,180,922 - 15,203,243 (-)NCBIMGSCv36mm8
Celera1716,263,619 - 16,283,553 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzbromarone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
clofibrate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenvalerate  (ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
genistein  (ISO)
gentamycin  (ISO)
hyaluronic acid  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (EXP,ISO)
indometacin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-ethionine  (ISO)
leflunomide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methylparaben  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
omeprazole  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
PhIP  (ISO)
phlorizin  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
stattic  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
theophylline  (ISO)
thioacetamide  (ISO)
tungsten  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vincaleukoblastine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (TAS)
nucleoplasm  (ISO,TAS)
nucleus  (IBA,ISO)
proteasome complex  (ISO)
proteasome core complex  (IBA,IDA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7579585   PMID:8045254   PMID:9107673   PMID:9286694   PMID:9862975   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11252172   PMID:12477932  
PMID:12520002   PMID:12525704   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16857966   PMID:17110338   PMID:17540904   PMID:17967808   PMID:18245833  
PMID:18799693   PMID:19074312   PMID:20498273   PMID:21267068   PMID:21278135   PMID:21565611   PMID:21677750   PMID:21873635   PMID:23018640   PMID:25737280   PMID:27768902   PMID:31040226  
PMID:32325033   PMID:36114006   PMID:37389991  


Genomics

Comparative Map Data
Psmb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,695,983 - 15,718,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,695,283 - 15,720,013 (-)EnsemblGRCm39 Ensembl
GRCm381715,475,721 - 15,498,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,475,021 - 15,499,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv371715,612,685 - 15,635,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361715,180,922 - 15,203,243 (-)NCBIMGSCv36mm8
Celera1716,263,619 - 16,283,553 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
PSMB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386170,535,120 - 170,553,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6170,535,120 - 170,553,307 (-)EnsemblGRCh38hg38GRCh38
GRCh376170,844,208 - 170,862,395 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366170,686,134 - 170,704,312 (-)NCBINCBI36Build 36hg18NCBI36
Build 346170,761,840 - 170,780,019NCBI
Celera6171,639,464 - 171,657,679 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6168,349,261 - 168,367,473 (-)NCBIHuRef
CHM1_16171,105,483 - 171,123,692 (-)NCBICHM1_1
T2T-CHM13v2.06171,908,679 - 171,926,858 (-)NCBIT2T-CHM13v2.0
Psmb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,115,770 - 65,136,516 (-)NCBIGRCr8
mRatBN7.2156,442,432 - 56,463,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl156,420,618 - 56,463,560 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,293,207 - 61,311,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,956,748 - 69,974,559 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,203,175 - 63,220,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,470,878 - 57,491,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,470,632 - 57,489,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,399,237 - 58,419,917 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,369,775 - 54,388,816 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1154,372,719 - 54,391,761 (-)NCBI
Celera152,648,620 - 52,666,985 (-)NCBICelera
Cytogenetic Map1q12NCBI
Psmb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,286,835 - 3,304,931 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,285,610 - 3,304,210 (+)NCBIChiLan1.0ChiLan1.0
PSMB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25190,812,047 - 190,831,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16188,713,683 - 188,732,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06168,695,047 - 168,713,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16173,781,040 - 173,799,243 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6173,781,040 - 173,799,342 (-)Ensemblpanpan1.1panPan2
PSMB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11272,440,224 - 72,456,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1272,440,224 - 72,456,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1272,202,460 - 72,218,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01273,425,690 - 73,441,776 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1273,425,690 - 73,441,754 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,698,433 - 72,714,512 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,520,615 - 72,536,698 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,911,637 - 72,927,722 (-)NCBIUU_Cfam_GSD_1.0
Psmb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946151,224,293 - 151,246,522 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493709866,832 - 81,708 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493709867,298 - 80,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,676 - 40,032 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,827 - 40,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PSMB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,682,501 - 97,701,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1397,682,369 - 97,701,799 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604069,680,366 - 69,699,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248506,337,094 - 6,357,997 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248506,339,918 - 6,357,925 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psmb1
743 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:105
Interacting mature miRNAs:114
Transcripts:ENSMUST00000014913
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse

Markers in Region
C81484  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,475,760 - 15,475,839UniSTSGRCm38
MGSCv371715,612,724 - 15,612,803UniSTSGRCm37
Celera1716,263,658 - 16,263,737UniSTS
Cytogenetic Map17A2UniSTS
cM Map178.25UniSTS
Whitehead/MRC_RH17218.3UniSTS
RH127091  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X94,774,685 - 94,774,923UniSTSGRCm38
GRCm381715,475,733 - 15,475,971UniSTSGRCm38
MGSCv371715,612,697 - 15,612,935UniSTSGRCm37
MGSCv37X92,020,024 - 92,020,262UniSTSGRCm37
CeleraX81,687,117 - 81,687,355UniSTS
Celera1716,263,631 - 16,263,869UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic MapXC3UniSTS
cM Map178.25UniSTS
RH124815  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,475,980 - 15,476,188UniSTSGRCm38
MGSCv371715,612,944 - 15,613,152UniSTSGRCm37
Celera1716,263,878 - 16,264,086UniSTS
Cytogenetic Map17A2UniSTS
cM Map178.25UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000014913   ⟹   ENSMUSP00000014913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,695,283 - 15,718,560 (-)Ensembl
GRCm38.p6 Ensembl1715,475,021 - 15,498,298 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231341   ⟹   ENSMUSP00000156355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,696,221 - 15,718,601 (-)Ensembl
GRCm38.p6 Ensembl1715,475,959 - 15,498,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,695,981 - 15,698,851 (-)Ensembl
GRCm38.p6 Ensembl1715,475,719 - 15,478,589 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232500   ⟹   ENSMUSP00000156359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,695,979 - 15,720,013 (-)Ensembl
GRCm38.p6 Ensembl1715,475,717 - 15,499,751 (-)Ensembl
RefSeq Acc Id: NM_011185   ⟹   NP_035315
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,695,983 - 15,718,538 (-)NCBI
GRCm381715,475,721 - 15,498,276 (-)ENTREZGENE
MGSCv371715,612,685 - 15,635,240 (-)RGD
Celera1716,263,619 - 16,283,553 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035315   ⟸   NM_011185
- UniProtKB: Q62038 (UniProtKB/Swiss-Prot),   Q62039 (UniProtKB/Swiss-Prot),   O09061 (UniProtKB/Swiss-Prot),   Q6RI64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000156355   ⟸   ENSMUST00000231341
RefSeq Acc Id: ENSMUSP00000014913   ⟸   ENSMUST00000014913
RefSeq Acc Id: ENSMUSP00000156359   ⟸   ENSMUST00000232500

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09061-F1-model_v2 AlphaFold O09061 1-240 view protein structure

Promoters
RGD ID:13674828
Promoter ID:EPDNEW_M21563
Type:initiation region
Name:Psmb1_1
Description:Mus musculus proteasome (prosome, macropain) subunit, beta type1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381715,498,295 - 15,498,355EPDNEW
RGD ID:6828531
Promoter ID:MM_KWN:22227
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000014913
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361715,635,031 - 15,635,531 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104884 AgrOrtholog
Ensembl Genes ENSMUSG00000014769 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000014913 ENTREZGENE
  ENSMUST00000014913.11 UniProtKB/Swiss-Prot
  ENSMUST00000231341.2 UniProtKB/TrEMBL
  ENSMUST00000232500.2 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104884 ENTREZGENE
NCBI Gene 19170 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA TYPE-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Psmb1 PhenoGen
PROSITE PROTEASOME_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A338P7C0_MOUSE UniProtKB/TrEMBL
  A0A338P7F1_MOUSE UniProtKB/TrEMBL
  O09061 ENTREZGENE, UniProtKB/Swiss-Prot
  Q62038 ENTREZGENE
  Q62039 ENTREZGENE
  Q6LCE5_MOUSE UniProtKB/TrEMBL
  Q6RI64 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q62038 UniProtKB/Swiss-Prot
  Q62039 UniProtKB/Swiss-Prot