Llgl1 (LLGL1 scribble cell polarity complex component) - Rat Genome Database

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Gene: Llgl1 (LLGL1 scribble cell polarity complex component) Mus musculus
Analyze
Symbol: Llgl1
Name: LLGL1 scribble cell polarity complex component
RGD ID: 733153
MGI Page MGI
Description: Predicted to enable GTPase activator activity; enzyme binding activity; and myosin II binding activity. Acts upstream of or within maintenance of apical/basal cell polarity. Located in several cellular components, including basolateral plasma membrane; cytoskeleton; and myelin sheath abaxonal region. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human LLGL1 (LLGL scribble cell polarity complex component 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI325176; lethal giant larvae homolog 1; lethal giant larvae homolog 1 (Drosophila); lethal(2) giant larvae protein homolog 1; Lg; Lgl1; LLGL; Llglh; mgl-1; Mgl1; mlgl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,590,501 - 60,605,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,590,549 - 60,605,012 (+)EnsemblGRCm39 Ensembl
GRCm381160,699,672 - 60,714,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,699,723 - 60,714,186 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,513,192 - 60,527,690 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,130,925 - 61,145,271 (+)NCBIMGSCv36mm8
MGSCv361160,516,035 - 60,530,381 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Loss of cell polarity causes severe brain dysplasia in Lgl1 knockout mice. Klezovitch O, etal., Genes Dev 2004 Mar 1;18(5):559-71.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7542763   PMID:8020994   PMID:8103190   PMID:8565641   PMID:9168970   PMID:9703981   PMID:10049592   PMID:10349636   PMID:10902907   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11809830   PMID:12477932   PMID:12629547   PMID:12904583   PMID:14612921   PMID:14681479   PMID:15489334   PMID:15604097   PMID:15782199   PMID:15882966   PMID:15964280   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17273973   PMID:17670908   PMID:18287559   PMID:18799693   PMID:19098995   PMID:19666823   PMID:20237282   PMID:20826529   PMID:20829363   PMID:21606200  
PMID:21873635   PMID:22219375   PMID:22333836   PMID:23277453   PMID:23653213   PMID:24213535   PMID:24475281   PMID:25050931   PMID:26391810   PMID:27603780   PMID:28190767   PMID:28472654  
PMID:28552558   PMID:29842893   PMID:30131568   PMID:30597194   PMID:31415124   PMID:31546104   PMID:32268148   PMID:32325033   PMID:32581705   PMID:32971116   PMID:34735822   PMID:35140622  
PMID:35172155   PMID:37587260   PMID:38187761  


Genomics

Comparative Map Data
Llgl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,590,501 - 60,605,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,590,549 - 60,605,012 (+)EnsemblGRCm39 Ensembl
GRCm381160,699,672 - 60,714,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,699,723 - 60,714,186 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,513,192 - 60,527,690 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,130,925 - 61,145,271 (+)NCBIMGSCv36mm8
MGSCv361160,516,035 - 60,530,381 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
LLGL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,225,635 - 18,244,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,225,635 - 18,244,875 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,128,949 - 18,148,189 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,069,661 - 18,088,914 (+)NCBINCBI36Build 36hg18NCBI36
Build 341718,069,715 - 18,087,963NCBI
Celera1719,074,368 - 19,089,303 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,886,506 - 17,901,442 (+)NCBIHuRef
CHM1_11718,137,711 - 18,156,955 (+)NCBICHM1_1
T2T-CHM13v2.01718,172,434 - 18,191,679 (+)NCBIT2T-CHM13v2.0
Llgl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,878,936 - 45,893,609 (+)NCBIGRCr8
mRatBN7.21045,379,423 - 45,394,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,379,515 - 45,394,094 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,080,221 - 50,094,720 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,570,609 - 49,585,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,074,208 - 45,088,705 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,940,873 - 46,955,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,940,965 - 46,954,674 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,713,910 - 46,728,515 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,845,810 - 46,859,100 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11046,859,432 - 46,872,723 (+)NCBI
Celera1044,634,872 - 44,649,254 (+)NCBICelera
Cytogenetic Map10q22NCBI
Llgl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547811,075,399 - 11,089,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547811,075,399 - 11,089,818 (-)NCBIChiLan1.0ChiLan1.0
LLGL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21953,021,328 - 53,040,580 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,732,297 - 57,751,542 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,770,511 - 32,789,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11737,966,100 - 37,982,466 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1737,966,100 - 37,985,103 (-)Ensemblpanpan1.1panPan2
LLGL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,314,807 - 41,332,687 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,315,152 - 41,332,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,454,283 - 41,472,092 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,421,547 - 41,439,311 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,421,553 - 41,439,596 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,389,367 - 41,407,168 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,336,840 - 41,354,607 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,528,638 - 41,546,442 (-)NCBIUU_Cfam_GSD_1.0
Llgl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,082,262 - 61,099,934 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,770,620 - 1,788,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,770,797 - 1,784,716 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LLGL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,487,343 - 60,500,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,487,337 - 60,500,423 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LLGL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,266,648 - 17,285,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,266,684 - 17,284,076 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,617,199 - 3,638,591 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Llgl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,227,758 - 3,245,118 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,227,518 - 3,245,137 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Llgl1
28 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1013
Count of miRNA genes:448
Interacting mature miRNAs:499
Transcripts:ENSMUST00000052346, ENSMUST00000108719, ENSMUST00000128749
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse

Markers in Region
AI325176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,713,952 - 60,714,088UniSTSGRCm38
MGSCv371160,527,454 - 60,527,590UniSTSGRCm37
Cytogenetic Map11B2UniSTS
Cytogenetic Map11BUniSTS
cM Map1134.0UniSTS
cM Map1134.0UniSTS
Whitehead/MRC_RH11800.9UniSTS
Llgl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B2UniSTS
cM Map1134.0UniSTS
D11Jpk2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,703,140 - 60,703,255UniSTSGRCm38
MGSCv371160,516,642 - 60,516,757UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map1132.0UniSTS
Llglh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B2UniSTS
cM Map1134.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF142329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA749438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000052346   ⟹   ENSMUSP00000060749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,590,549 - 60,605,012 (+)Ensembl
GRCm38.p6 Ensembl1160,699,723 - 60,714,186 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108719   ⟹   ENSMUSP00000104359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,590,671 - 60,605,012 (+)Ensembl
GRCm38.p6 Ensembl1160,699,845 - 60,714,186 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,595,023 - 60,596,895 (+)Ensembl
GRCm38.p6 Ensembl1160,704,197 - 60,706,069 (+)Ensembl
RefSeq Acc Id: NM_001159404   ⟹   NP_001152876
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
MGSCv371160,513,192 - 60,527,690 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159405   ⟹   NP_001152877
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
MGSCv371160,513,192 - 60,527,690 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001378836   ⟹   NP_001365765
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378837   ⟹   NP_001365766
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008502   ⟹   NP_032528
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
MGSCv371160,513,192 - 60,527,690 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166135
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
Sequence:
RefSeq Acc Id: NR_166136
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,526 - 60,605,012 (+)NCBI
GRCm381160,699,700 - 60,714,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245613   ⟹   XP_030101473
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,590,501 - 60,605,009 (+)NCBI
GRCm381160,699,672 - 60,714,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156363   ⟹   XP_036012256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,593,741 - 60,605,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156364   ⟹   XP_036012257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,595,495 - 60,605,009 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032528   ⟸   NM_008502
- Peptide Label: isoform 2
- UniProtKB: Q80Y17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001152876   ⟸   NM_001159404
- Peptide Label: isoform 3
- UniProtKB: Q7TNV3 (UniProtKB/Swiss-Prot),   Q61856 (UniProtKB/Swiss-Prot),   Q8BN92 (UniProtKB/Swiss-Prot),   Q80Y17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001152877   ⟸   NM_001159405
- Peptide Label: isoform 1
- UniProtKB: A0A0R4J0S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101473   ⟸   XM_030245613
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001365766   ⟸   NM_001378837
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001365765   ⟸   NM_001378836
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000060749   ⟸   ENSMUST00000052346
RefSeq Acc Id: ENSMUSP00000104359   ⟸   ENSMUST00000108719
RefSeq Acc Id: XP_036012256   ⟸   XM_036156363
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036012257   ⟸   XM_036156364
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80Y17-F1-model_v2 AlphaFold Q80Y17 1-1036 view protein structure

Promoters
RGD ID:6821197
Promoter ID:MM_KWN:7733
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001159404,   NM_001159405,   NM_008502
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,512,491 - 60,513,482 (+)MPROMDB
RGD ID:6821199
Promoter ID:MM_KWN:7734
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000017741
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,516,921 - 60,517,421 (+)MPROMDB
RGD ID:6846854
Promoter ID:MM_ACW:7638
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney
Transcripts:LLGL1.ESEP07,   LLGL1.FSEP07,   LLGL1.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,523,671 - 60,525,117 (+)MPROMDB
RGD ID:8674886
Promoter ID:EPDNEW_M15474
Type:initiation region
Name:Llgl1_1
Description:Mus musculus LLGL1 scribble cell polarity complex component ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381160,699,700 - 60,699,760EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102682 AgrOrtholog
Ensembl Genes ENSMUSG00000020536 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000052346 ENTREZGENE
  ENSMUST00000052346.10 UniProtKB/TrEMBL
  ENSMUST00000108719 ENTREZGENE
  ENSMUST00000108719.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Lethal2_giant UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lgl_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LLGL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16897 UniProtKB/Swiss-Prot
MGD MGI:102682 ENTREZGENE
NCBI Gene 16897 ENTREZGENE
PANTHER LETHAL 2 GIANT LARVAE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LETHAL(2) GIANT LARVAE PROTEIN HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lgl_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LLGL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Llgl1 PhenoGen
PRINTS LETHAL2GIANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0S4 ENTREZGENE, UniProtKB/TrEMBL
  L2GL1_MOUSE UniProtKB/Swiss-Prot
  Q61856 ENTREZGENE
  Q7TNV3 ENTREZGENE
  Q80Y17 ENTREZGENE
  Q8BN92 ENTREZGENE
  Q8BNH9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q61856 UniProtKB/Swiss-Prot
  Q7TNV3 UniProtKB/Swiss-Prot
  Q8BN92 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Llgl1  LLGL1 scribble cell polarity complex component    lethal giant larvae homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED