Vim (vimentin) - Rat Genome Database

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Gene: Vim (vimentin) Mus musculus
Analyze
Symbol: Vim
Name: vimentin
RGD ID: 733129
MGI Page MGI
Description: Enables RNA binding activity. A structural constituent of cytoskeleton and structural constituent of eye lens. Involved in intermediate filament organization and positive regulation of gene expression. Acts upstream of or within several processes, including SMAD protein signal transduction; astrocyte differentiation; and cellular response to interferon-gamma. Located in several cellular components, including cell leading edge; intermediate filament; and phagocytic vesicle. Is expressed in several structures, including alimentary system; brain; genitourinary system; heart; and sensory organ. Used to study cataract 30. Human ortholog(s) of this gene implicated in atherosclerosis; autoimmune disease (multiple); and cataract 30. Orthologous to human VIM (vimentin); PARTICIPATES IN cyclooxygenase mediated pathway of arachidonic acid metabolism; INTERACTS WITH 1,1-dichloroethene; 1,2-dichloroethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC102095
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39213,579,122 - 13,587,637 (+)NCBIGRCm39mm39
GRCm39 Ensembl213,578,738 - 13,587,637 (+)Ensembl
GRCm38213,574,311 - 13,582,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl213,573,927 - 13,582,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv37213,495,938 - 13,504,453 (+)NCBIGRCm37mm9NCBIm37
MGSCv36213,491,805 - 13,500,660 (+)NCBImm8
Celera213,484,803 - 13,493,320 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map210.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
(20S)-ginsenoside Rg3  (ISO)
(25R)-cholest-5-ene-3beta,26-diol  (ISO)
(R)-carnitine  (ISO)
(R,R)-tramadol  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,3-dinitrobenzene  (ISO)
1,4-dithiothreitol  (ISO)
1-naphthyl isothiocyanate  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,5-hexanedione  (ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-methyl-2-[4-(1,2,3,4-tetrahydronaphthalen-1-yl)phenoxy]propanoic acid  (ISO)
2-naphthylamine  (ISO)
2-nitrofluorene  (ISO)
2-Oxohexane  (ISO)
26-hydroxycholesterol  (ISO)
3',5'-cyclic GMP  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-dihydroxybenzaldehyde  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroperoxycyclophosphamide  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
6-Cyano-7-nitroquinoxaline-2,3-dione  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
9-cis-retinoic acid  (ISO)
Ac-Ser-Asp-Lys-Pro-OH  (EXP)
acetamide  (ISO)
acetylcholine  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allethrin  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
andrographolide  (EXP,ISO)
anthocyanin  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antimycin A  (ISO)
arecoline  (ISO)
aristolochic acid  (EXP,ISO)
Aroclor 1254  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
bacitracin  (ISO)
bafilomycin A1  (ISO)
bathocuproine disulfonic acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
Brodifacoum  (ISO)
bucladesine  (ISO)
buspirone  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
calyculin a  (ISO)
cannabidiol  (ISO)
capsaicin  (ISO)
captan  (EXP)
captopril  (EXP)
carbon nanotube  (EXP)
carboplatin  (ISO)
carvedilol  (ISO)
casticin  (EXP,ISO)
CHIR 99021  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP,ISO)
cholesterol  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
chrysin  (ISO)
cisatracurium  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (EXP)
clodronic acid  (ISO)
clofibrate  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP)
coumarin  (ISO)
crizotinib  (ISO)
crocidolite asbestos  (EXP,ISO)
CU-O LINKAGE  (EXP)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cyhalothrin  (ISO)
cypermethrin  (EXP,ISO)
D-glucose  (ISO)
dantrolene  (ISO)
daunorubicin  (ISO)
DDE  (ISO)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
Deguelin  (ISO)
Deoxyschizandrin  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
Di-n-octyl phthalate  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP,ISO)
dichromium trioxide  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
Dictamnine  (ISO)
dieckol  (ISO)
diethylstilbestrol  (EXP)
dihydroartemisinin  (ISO)
Diosbulbin B  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (EXP,ISO)
diuron  (ISO)
dizocilpine maleate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (ISO)
entinostat  (EXP)
enzyme inhibitor  (ISO)
ergosta-4,6,8(14),22-tetraen-3-one  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (ISO)
everolimus  (ISO)
fenamidone  (EXP)
fentin chloride  (ISO)
fenvalerate  (ISO)
ferulic acid  (ISO)
finasteride  (ISO)
fisetin  (ISO)
flavonol  (ISO)
fluvastatin  (ISO)
folic acid  (EXP)
folpet  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gefitinib  (EXP)
genistein  (ISO)
gentamycin  (ISO)
gingerol  (ISO)
Ginkgoic acid  (ISO)
glucose  (ISO)
glyphosate  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
GW 6471  (ISO)
heptachlor  (ISO)
hexane  (ISO)
homocysteine  (ISO)
hyaluronic acid  (EXP,ISO)
hydrogen peroxide  (EXP,ISO)
hydrogen sulfide  (EXP)
indole-3-methanol  (ISO)
indometacin  (EXP,ISO)
ionomycin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
jaspamide  (ISO)
ketoconazole  (ISO)
KN-93  (ISO)
L-1,4-dithiothreitol  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (EXP)
lapatinib  (ISO)
lead diacetate  (ISO)
lead(II) chloride  (ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
limonin  (ISO)
linsidomine  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium chloride  (ISO)
losartan  (EXP,ISO)
lutein  (EXP)
LY294002  (ISO)
manganese(II) chloride  (ISO)
mangiferin  (ISO)
medroxyprogesterone acetate  (ISO)
menadione  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (ISO)
mifepristone  (ISO)
MK-2206  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
monocrotaline  (ISO)
morphine  (ISO)
morusin  (EXP,ISO)
N(6)-dimethylallyladenine  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nafenopin  (ISO)
nefazodone  (ISO)
Neferine  (ISO)
nickel atom  (ISO)
nickel subsulfide  (ISO)
niclosamide  (ISO)
nicotine  (ISO)
nifedipine  (ISO)
nimesulide  (ISO)
nitrogen mustard  (EXP)
Nonylphenol  (EXP,ISO)
nystatin  (EXP)
ochratoxin A  (EXP,ISO)
oridonin  (ISO)
ouabain  (ISO)
oxcarbazepine  (ISO)
oxycodone  (ISO)
ozone  (ISO)
Pachymic acid  (ISO)
palbociclib  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP,ISO)
phenol red  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
poly(guanylic acid)  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (EXP,ISO)
pyrogallol  (EXP)
pyrrolidine dithiocarbamate  (ISO)
pyrvinium  (ISO)
quercetin  (ISO)
radon atom  (EXP,ISO)
radon(0)  (EXP,ISO)
Rebamipide  (ISO)
reparixin  (ISO)
resveratrol  (ISO)
ridaforolimus  (ISO)
rimonabant  (EXP)
rosmarinic acid  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-adenosyl-L-methioninate  (EXP)
S-adenosyl-L-methionine  (EXP)
Salinomycin  (ISO)
SB 203580  (ISO)
SB 431542  (EXP,ISO)
SCH772984  (EXP)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silibinin  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (EXP,ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
sodium hydrogencarbonate  (ISO)
Soman  (ISO)
sorafenib  (ISO)
stattic  (ISO)
staurosporine  (ISO)
streptozocin  (ISO)
sulfasalazine  (EXP)
sulforaphane  (ISO)
Swertiamarin  (ISO)
tacrolimus hydrate  (EXP,ISO)
tamibarotene  (ISO)
Tanshinone I  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetraethylenepentamine  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
thymoquinone  (EXP,ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
toxaphene  (ISO)
tramadol  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenylstannane  (ISO)
triptonide  (EXP)
tyrphostin AG 1478  (ISO)
U-73122  (ISO)
undecane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP,ISO)
verapamil  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
warfarin  (ISO)
wortmannin  (ISO)
XAV939  (ISO)
Y-27632  (ISO)
zoledronic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal angiogenesis  (IAGP)
abnormal astrocyte morphology  (IAGP)
abnormal astrocyte physiology  (IAGP)
abnormal blood vessel morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cell migration  (IAGP)
abnormal cell morphology  (IAGP)
abnormal cell physiology  (IAGP)
abnormal cellular extravasation  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal CNS glial cell morphology  (IAGP)
abnormal cytokine level  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal leukocyte adhesion  (IAGP)
abnormal leukocyte migration  (IAGP)
abnormal leukocyte tethering or rolling  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal motor learning  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal spinal cord morphology  (IAGP)
abnormal vasoconstriction  (IAGP)
abnormal vasodilation  (IAGP)
abnormal visual cortex morphology  (IAGP)
astrocytosis  (IAGP)
brain atrophy  (IAGP)
brain inflammation  (IAGP)
decreased brain weight  (IAGP)
decreased inflammatory response  (IAGP)
decreased mean systemic arterial blood pressure  (IAGP)
decreased neuron apoptosis  (IAGP)
decreased Purkinje cell number  (IAGP)
gliosis  (IAGP)
hippocampal neuron degeneration  (IAGP)
hyperactivity  (IAGP)
impaired balance  (IAGP)
impaired coordination  (IAGP)
increased anxiety-related response  (IAGP)
increased circulating creatinine level  (IAGP)
increased sensitivity to induced morbidity/mortality  (IAGP)
increased vasodilation  (IAGP)
intracranial hemorrhage  (IAGP)
neurodegeneration  (IAGP)
premature death  (IAGP)
Purkinje cell degeneration  (IAGP)
thin cerebral cortex  (IAGP)
References

References - curated
1. Akoglu T, etal., Clin Immunol Immunopathol. 1986 Dec;41(3):427-32.
2. Baldwin SA and Scheff SW, Glia. 1996 Mar;16(3):266-75.
3. Bechtold DA and Brown IR, Neurochem Res 2003 Aug;28(8):1163-73.
4. El-Barbary AM, etal., J Rheumatol. 2011 May;38(5):828-34. Epub 2011 Mar 1.
5. Franch A, etal., J Rheumatol. 1994 Mar;21(3):489-97.
6. Kelso ML, etal., Neuroscience. 2011 Dec 1;197:381-93. Epub 2011 Sep 16.
7. Korzhevskii DE, etal., Neurosci Behav Physiol. 2008 Oct;38(8):845-8. Epub 2008 Sep 18.
8. Kurki P, etal., J Rheumatol. 1983 Aug;10(4):558-62.
9. Levin EC, etal., Brain Res. 2009 Nov 17;1298:194-207. Epub 2009 Sep 1.
10. Liang JR and Yang H, Biomed Pharmacother. 2020 May;125:109585. doi: 10.1016/j.biopha.2019.109585. Epub 2020 Feb 25.
11. Lin J and Cai W, J Neurotrauma. 2004 Nov;21(11):1671-82.
12. MGD data from the GO Consortium
13. Moon C, etal., Brain Res. 2004 Dec 3;1028(2):238-42.
14. Nakamura Y, etal., Int J Cancer. 2009 Jun 1;124(11):2512-9.
15. Niknami M, etal., Int J Biochem Cell Biol. 2009 May;41(5):994-7. doi: 10.1016/j.biocel.2008.07.017. Epub 2008 Aug 8.
16. OMIM Disease Annotation Pipeline
17. Pekny M, etal., J Cell Biol. 1999 May 3;145(3):503-14.
18. Poduri A, etal., Mol Cell Biochem. 2012 Jan;360(1-2):181-8. Epub 2011 Sep 22.
19. Ranchoux B, etal., Circulation. 2015 Mar 17;131(11):1006-18. doi: 10.1161/CIRCULATIONAHA.114.008750. Epub 2015 Jan 15.
20. RGD automated import pipeline
21. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
22. RGD automated import pipeline for gene-chemical interactions
23. Toyooka T, etal., J Neurotrauma. 2011 Apr;28(4):607-18. Epub 2011 Mar 24.
24. van de Stadt LA, etal., Arthritis Rheum. 2011 Nov;63(11):3226-33. doi: 10.1002/art.30537.
25. Wen JJ and Garg NJ, Mol Cell Proteomics. 2011 Dec 22.
26. Zamoner A, etal., Mol Cell Endocrinol. 2007 Mar 15;267(1-2):116-26. Epub 2007 Jan 20.
27. Zamoner A, etal., Steroids. 2008 Dec 22;73(14):1400-8. Epub 2008 Jul 17.
28. Zou J, etal., Virchows Arch. 2006 Apr;448(4):485-92. Epub 2006 Jan 18.
Additional References at PubMed
PMID:1315305   PMID:1372074   PMID:1385302   PMID:1611218   PMID:1655359   PMID:1676977   PMID:1680375   PMID:1850997   PMID:1916246   PMID:2137249   PMID:2140597   PMID:2325630  
PMID:2493000   PMID:2500966   PMID:2693040   PMID:2744479   PMID:2767427   PMID:6161051   PMID:7523108   PMID:7533563   PMID:7665181   PMID:7691937   PMID:7720210   PMID:7766993  
PMID:7890332   PMID:7954832   PMID:8070623   PMID:8170478   PMID:8188282   PMID:8261138   PMID:8307566   PMID:8314004   PMID:8318736   PMID:8358169   PMID:8449489   PMID:8486356  
PMID:8530383   PMID:8543176   PMID:8543661   PMID:8597644   PMID:8609166   PMID:8630490   PMID:8634150   PMID:8651505   PMID:8666670   PMID:8692820   PMID:9011744   PMID:9117989  
PMID:9143510   PMID:9294120   PMID:9314534   PMID:9389758   PMID:9415485   PMID:9504050   PMID:9625752   PMID:9671659   PMID:9795147   PMID:9888296   PMID:10029587   PMID:10102687  
PMID:10349636   PMID:10446168   PMID:10512984   PMID:10559638   PMID:10625659   PMID:10712381   PMID:10816608   PMID:10852824   PMID:10922068   PMID:10984437   PMID:10989258   PMID:11042159  
PMID:11044609   PMID:11076861   PMID:11171335   PMID:11217851   PMID:11279275   PMID:11307167   PMID:11321598   PMID:11414789   PMID:11475331   PMID:11487638   PMID:11493566   PMID:11514563  
PMID:11520676   PMID:11566879   PMID:11696558   PMID:11701765   PMID:11706940   PMID:11747604   PMID:11807023   PMID:11865027   PMID:11895474   PMID:11932925   PMID:12128098   PMID:12149647  
PMID:12160147   PMID:12169683   PMID:12177195   PMID:12221011   PMID:12223406   PMID:12244133   PMID:12379728   PMID:12426373   PMID:12453462   PMID:12458200   PMID:12466851   PMID:12477932  
PMID:12586425   PMID:12724835   PMID:12861073   PMID:14595844   PMID:14610273   PMID:14641326   PMID:14660441   PMID:14681479   PMID:14706695   PMID:14729942   PMID:15026142   PMID:15037121  
PMID:15128297   PMID:15207855   PMID:15226376   PMID:15238351   PMID:15251432   PMID:15261829   PMID:15265691   PMID:15280211   PMID:15450850   PMID:15634788   PMID:15662841   PMID:15713670  
PMID:15731004   PMID:15748847   PMID:15749887   PMID:15782199   PMID:15797020   PMID:15809042   PMID:15817462   PMID:15899914   PMID:15958512   PMID:15965470   PMID:15972963   PMID:16052496  
PMID:16141072   PMID:16141073   PMID:16196028   PMID:16270034   PMID:16373170   PMID:16387639   PMID:16429129   PMID:16458080   PMID:16602821   PMID:16702404   PMID:16769727   PMID:16884701  
PMID:16980969   PMID:17015463   PMID:17101724   PMID:17108173   PMID:17189626   PMID:17192421   PMID:17192600   PMID:17224453   PMID:17251187   PMID:17270292   PMID:17313568   PMID:17356066  
PMID:17467685   PMID:17525210   PMID:17533120   PMID:17589506   PMID:17604020   PMID:17676644   PMID:17680824   PMID:17882221   PMID:17932483   PMID:18038450   PMID:18090917   PMID:18094027  
PMID:18178558   PMID:18192284   PMID:18214994   PMID:18231966   PMID:18308476   PMID:18351630   PMID:18358466   PMID:18371380   PMID:18371946   PMID:18469190   PMID:18469343   PMID:18495661  
PMID:18568073   PMID:18599437   PMID:18729210   PMID:18806271   PMID:18827015   PMID:18830900   PMID:18848541   PMID:18849992   PMID:18940912   PMID:18948621   PMID:19029034   PMID:19141476  
PMID:19144319   PMID:19217425   PMID:19223297   PMID:19291697   PMID:19302980   PMID:19367791   PMID:19373938   PMID:19403928   PMID:19420356   PMID:19423573   PMID:19445942   PMID:19498055  
PMID:19560548   PMID:19596361   PMID:19631635   PMID:19633665   PMID:19640478   PMID:19656809   PMID:19661150   PMID:19680541   PMID:19726676   PMID:19739253   PMID:19743445   PMID:19752599  
PMID:19796621   PMID:19820125   PMID:19838179   PMID:19841136   PMID:19998061   PMID:20023660   PMID:20103531   PMID:20143880   PMID:20170731   PMID:20353824   PMID:20382123   PMID:20410206  
PMID:20436479   PMID:20442854   PMID:20473291   PMID:20479526   PMID:20544856   PMID:20549747   PMID:20678473   PMID:20687112   PMID:20691176   PMID:20697379   PMID:20702585   PMID:20823249  
PMID:20869363   PMID:20934536   PMID:20935171   PMID:20963821   PMID:20974670   PMID:21118511   PMID:21147077   PMID:21181199   PMID:21186337   PMID:21194568   PMID:21216232   PMID:21242963  
PMID:21266579   PMID:21287656   PMID:21346197   PMID:21347296   PMID:21378307   PMID:21402174   PMID:21418524   PMID:21490060   PMID:21508962   PMID:21510876   PMID:21512159   PMID:21513708  
PMID:21525288   PMID:21562225   PMID:21565611   PMID:21624358   PMID:21659647   PMID:21677750   PMID:21709251   PMID:21746880   PMID:21750042   PMID:21768263   PMID:21803052   PMID:21828285  
PMID:21835343   PMID:21849552   PMID:21966382   PMID:22024319   PMID:22031903   PMID:22071110   PMID:22090492   PMID:22117063   PMID:22194995   PMID:22267199   PMID:22281059   PMID:22354480  
PMID:22357929   PMID:22360968   PMID:22366455   PMID:22395070   PMID:22421048   PMID:22476899   PMID:22535408   PMID:22535769   PMID:22546693   PMID:22560297   PMID:22673621   PMID:22681613  
PMID:22682244   PMID:22730381   PMID:22745758   PMID:22887872   PMID:22906538   PMID:22929228   PMID:22931601   PMID:22952236   PMID:22980982   PMID:22992803   PMID:23100423   PMID:23115305  
PMID:23135265   PMID:23150167   PMID:23178882   PMID:23180754   PMID:23200853   PMID:23223237   PMID:23226541   PMID:23236390   PMID:23239537   PMID:23261931   PMID:23285135   PMID:23297177  
PMID:23319608   PMID:23341629   PMID:23345421   PMID:23390484   PMID:23482494   PMID:23497137   PMID:23499552   PMID:23618343   PMID:23637336   PMID:23664004   PMID:23673330   PMID:23695674  
PMID:23727838   PMID:23754280   PMID:23805044   PMID:23812634   PMID:23828756   PMID:23838001   PMID:23885566   PMID:23926259   PMID:23936241   PMID:23991052   PMID:24048858   PMID:24057876  
PMID:24142690   PMID:24154525   PMID:24161570   PMID:24173802   PMID:24223940   PMID:24260306   PMID:24262428   PMID:24336287   PMID:24387004   PMID:24409333   PMID:24449835   PMID:24457600  
PMID:24614889   PMID:24642750   PMID:24661562   PMID:24733830   PMID:24735878   PMID:24805242   PMID:24843142   PMID:24854859   PMID:24859200   PMID:24860998   PMID:24875059   PMID:24963847  
PMID:24967582   PMID:25020278   PMID:25043249   PMID:25114215   PMID:25139858   PMID:25179606   PMID:25182747   PMID:25186293   PMID:25228773   PMID:25245017   PMID:25282615   PMID:25391964  
PMID:25501893   PMID:25505333   PMID:25516967   PMID:25523391   PMID:25549043   PMID:25588502   PMID:25721503   PMID:25731615   PMID:25762200   PMID:25775587   PMID:25787077   PMID:25813538  
PMID:25822714   PMID:25827072   PMID:25847236   PMID:25948589   PMID:25960350   PMID:26039099   PMID:26046524   PMID:26054850   PMID:26102067   PMID:26118771   PMID:26186445   PMID:26188246  
PMID:26212757   PMID:26251181   PMID:26252244   PMID:26283861   PMID:26324903   PMID:26329601   PMID:26370502   PMID:26387477   PMID:26411367   PMID:26465331   PMID:26496610   PMID:26598619  
PMID:26657772   PMID:26701169   PMID:26718118   PMID:26773517   PMID:26839365   PMID:26903501   PMID:26903504   PMID:26921468   PMID:26949938   PMID:27034005   PMID:27084889   PMID:27120339  
PMID:27141870   PMID:27150455   PMID:27282384   PMID:27300315   PMID:27318131   PMID:27320915   PMID:27419376   PMID:27436577   PMID:27457922   PMID:27466403   PMID:27480130   PMID:27538444  
PMID:27559293   PMID:27568979   PMID:27580238   PMID:27602574   PMID:27662907   PMID:27664421   PMID:27721024   PMID:27848932   PMID:28192800   PMID:28196902   PMID:28231465   PMID:28374796  
PMID:28378742   PMID:28450285   PMID:28475893   PMID:28533359   PMID:28535371   PMID:28551284   PMID:28576768   PMID:28671696   PMID:28687623   PMID:28728023   PMID:28768199   PMID:28807903  
PMID:28859094   PMID:28887018   PMID:28893946   PMID:28912461   PMID:28935707   PMID:28943241   PMID:28947532   PMID:28956310   PMID:29084269   PMID:29202695   PMID:29237738   PMID:29285798  
PMID:29324782   PMID:29361536   PMID:29409032   PMID:29437830   PMID:29450503   PMID:29483576   PMID:29487235   PMID:29631355   PMID:29689278   PMID:29700121   PMID:29700203   PMID:29769720  
PMID:29795232   PMID:29795351   PMID:29851958   PMID:29853630   PMID:29899142   PMID:29975682   PMID:30001399   PMID:30077770   PMID:30087825   PMID:30135482   PMID:30220568   PMID:30254276  
PMID:30266827   PMID:30322923   PMID:30333137   PMID:30389913   PMID:30451917   PMID:30456377   PMID:30457570   PMID:30483822   PMID:30485542   PMID:30504223   PMID:30550785   PMID:30562941  
PMID:30578393   PMID:30594504   PMID:30595499   PMID:30630170   PMID:30635555   PMID:30709655   PMID:30713523   PMID:30718289   PMID:30735538   PMID:30799229   PMID:30898653   PMID:30898767  
PMID:30912742   PMID:30936179   PMID:30944258   PMID:30947518   PMID:30995202   PMID:31063456   PMID:31077711   PMID:31112699   PMID:31171776   PMID:31181121   PMID:31197132   PMID:31197172  
PMID:31202705   PMID:31277925   PMID:31286822   PMID:31289197   PMID:31301300   PMID:31323030   PMID:31455807   PMID:31480524   PMID:31486675   PMID:31504280   PMID:31575647   PMID:31655624  
PMID:31665628   PMID:31676718   PMID:31693903   PMID:31699896   PMID:31721440   PMID:31825833   PMID:32005677   PMID:32017326   PMID:32049024   PMID:32100913   PMID:32115408   PMID:32128839  
PMID:32238932   PMID:32243503   PMID:32273567   PMID:32294449   PMID:32294451   PMID:32321712   PMID:32322056   PMID:32325033   PMID:32402291   PMID:32484994   PMID:32579270   PMID:32581705  
PMID:32597756   PMID:32602277   PMID:32668208   PMID:32744119   PMID:32882513   PMID:32888949   PMID:32900950   PMID:33020269   PMID:33050497   PMID:33053356   PMID:33132190   PMID:33177544  
PMID:33253712   PMID:33305192   PMID:33318148   PMID:33326788   PMID:33328632   PMID:33406432   PMID:33527355   PMID:33600763   PMID:33692421   PMID:33735101   PMID:33913477   PMID:33938018  


Genomics

Comparative Map Data
Vim
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39213,579,122 - 13,587,637 (+)NCBIGRCm39mm39
GRCm39 Ensembl213,578,738 - 13,587,637 (+)Ensembl
GRCm38213,574,311 - 13,582,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl213,573,927 - 13,582,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv37213,495,938 - 13,504,453 (+)NCBIGRCm37mm9NCBIm37
MGSCv36213,491,805 - 13,500,660 (+)NCBImm8
Celera213,484,803 - 13,493,320 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map210.04NCBI
VIM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1017,228,241 - 17,237,593 (+)EnsemblGRCh38hg38GRCh38
GRCh381017,228,241 - 17,237,593 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371017,270,240 - 17,279,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361017,311,304 - 17,319,598 (+)NCBINCBI36hg18NCBI36
Build 341017,311,308 - 17,319,594NCBI
Celera1017,203,520 - 17,212,854 (+)NCBI
Cytogenetic Map10p13NCBI
HuRef1017,183,488 - 17,192,823 (+)NCBIHuRef
CHM1_11017,270,372 - 17,279,705 (+)NCBICHM1_1
Vim
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21776,668,701 - 76,677,186 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1776,668,647 - 76,677,187 (+)Ensembl
Rnor_6.01780,882,715 - 80,891,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1780,882,666 - 80,891,212 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01782,500,898 - 82,509,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41787,847,280 - 87,855,763 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11787,858,112 - 87,866,596 (+)NCBI
Celera1776,037,845 - 76,046,329 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Vim
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542910,707,719 - 10,717,554 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542910,708,852 - 10,716,743 (-)NCBIChiLan1.0ChiLan1.0
VIM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11017,818,285 - 17,826,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1017,818,285 - 17,826,642 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01017,546,389 - 17,554,702 (+)NCBIMhudiblu_PPA_v0panPan3
VIM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1219,671,316 - 19,679,367 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl219,671,316 - 19,679,466 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,774,615 - 16,782,665 (-)NCBI
ROS_Cfam_1.0219,962,890 - 19,970,942 (-)NCBI
UMICH_Zoey_3.1217,165,331 - 17,173,380 (-)NCBI
UNSW_CanFamBas_1.0218,003,247 - 18,011,326 (-)NCBI
UU_Cfam_GSD_1.0218,621,519 - 18,629,571 (-)NCBI
Vim
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934417,901,147 - 17,908,782 (+)NCBI
SpeTri2.0NW_00493652010,051,692 - 10,059,324 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VIM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1043,517,307 - 43,526,172 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11043,516,441 - 43,526,172 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21048,225,950 - 48,235,670 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VIM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1917,183,466 - 17,191,771 (+)NCBI
ChlSab1.1 Ensembl917,183,388 - 17,191,829 (+)Ensembl
Vero_WHO_p1.0NW_02366605122,821,093 - 22,830,717 (+)NCBI
Vim
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479610,624,672 - 10,632,300 (-)NCBI

Position Markers
Vim  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38213,578,424 - 13,578,631UniSTSGRCm38
MGSCv37213,500,051 - 13,500,258UniSTSGRCm37
Celera213,488,916 - 13,489,123UniSTS
Cytogenetic Map2A2UniSTS
cM Map27.0UniSTS
cM Map27.0UniSTS
Vim  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A2UniSTS
Vim  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A2UniSTS
cM Map27.0UniSTS
VIM  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38213,578,415 - 13,578,664UniSTSGRCm38
MGSCv37213,500,042 - 13,500,291UniSTSGRCm37
Celera213,488,907 - 13,489,156UniSTS
Cytogenetic Map2A2UniSTS
Vim  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121984831Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125319748Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125319748Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126524778Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323390328289138Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967188027132630Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir30ammu-miR-30a-5pOncomiRDBexternal_infoNANA22476851
Mir138-1mmu-miR-138-5pOncomiRDBexternal_infoNANA22766839
Mir138-1mmu-miR-138-5pOncomiRDBexternal_infoNANA21770894
Mir138-2mmu-miR-138-5pOncomiRDBexternal_infoNANA22766839
Mir138-2mmu-miR-138-5pOncomiRDBexternal_infoNANA21770894

Predicted Target Of
Summary Value
Count of predictions:738
Count of miRNA genes:474
Interacting mature miRNAs:530
Transcripts:ENSMUST00000028062, ENSMUST00000141365, ENSMUST00000148248, ENSMUST00000155605
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC134386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M24849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M26251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X51438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z22526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028062   ⟹   ENSMUSP00000028062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl213,578,763 - 13,587,637 (+)Ensembl
GRCm38.p6 Ensembl213,573,952 - 13,582,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141365   ⟹   ENSMUSP00000114742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl213,578,738 - 13,579,644 (+)Ensembl
GRCm38.p6 Ensembl213,573,927 - 13,574,833 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148248
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl213,584,180 - 13,587,289 (+)Ensembl
GRCm38.p6 Ensembl213,579,369 - 13,582,478 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155605
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl213,579,133 - 13,583,415 (+)Ensembl
GRCm38.p6 Ensembl213,574,322 - 13,578,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191615
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl213,579,334 - 13,582,259 (+)Ensembl
GRCm38.p6 Ensembl213,574,523 - 13,577,448 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193675   ⟹   ENSMUSP00000141494
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl213,579,092 - 13,587,636 (+)Ensembl
GRCm38.p6 Ensembl213,574,281 - 13,582,825 (+)Ensembl
RefSeq Acc Id: NM_011701   ⟹   NP_035831
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39213,579,122 - 13,587,637 (+)NCBI
GRCm38213,574,311 - 13,582,826 (+)ENTREZGENE
MGSCv37213,495,938 - 13,504,453 (+)RGD
Celera213,484,803 - 13,493,320 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035831   ⟸   NM_011701
- UniProtKB: P20152 (UniProtKB/Swiss-Prot),   Q5FWJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000028062   ⟸   ENSMUST00000028062
RefSeq Acc Id: ENSMUSP00000141494   ⟸   ENSMUST00000193675
RefSeq Acc Id: ENSMUSP00000114742   ⟸   ENSMUST00000141365
Protein Domains
IF rod

Promoters
RGD ID:6833063
Promoter ID:MM_KWN:27803
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000028062,   OTTMUST00000026366,   OTTMUST00000026367
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36213,494,756 - 13,496,597 (+)MPROMDB
RGD ID:6833066
Promoter ID:MM_KWN:27804
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000026368
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36213,500,091 - 13,501,477 (+)MPROMDB
RGD ID:6847707
Promoter ID:MM_ACW:27537
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:VIM.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36213,501,549 - 13,502,049 (+)MPROMDB
RGD ID:6847708
Promoter ID:MM_ACW:27538
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   MEF_B4,   MEF_B6
Transcripts:VIM.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36213,502,976 - 13,504,247 (+)MPROMDB
RGD ID:6876378
Promoter ID:EPDNEW_M1640
Type:initiation region
Name:Vim_1
Description:Mus musculus vimentin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38213,574,311 - 13,574,371EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98932 AgrOrtholog
Ensembl Genes ENSMUSG00000026728 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028062 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114742 UniProtKB/TrEMBL
  ENSMUSP00000141494 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028062 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000141365 UniProtKB/TrEMBL
  ENSMUST00000193675 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_rod_dom_coil1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Intermed_filament_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vimentin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22352 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98932 ENTREZGENE
NCBI Gene 22352 ENTREZGENE
PANTHER PTHR45652:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Filament_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vim PhenoGen
PROSITE IF_ROD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YWC8_MOUSE UniProtKB/TrEMBL
  A2AKJ2_MOUSE UniProtKB/TrEMBL
  A4IF59_MOUSE UniProtKB/TrEMBL
  P20152 ENTREZGENE
  Q3TFD9_MOUSE UniProtKB/TrEMBL
  Q3TWV0_MOUSE UniProtKB/TrEMBL
  Q3U6S1_MOUSE UniProtKB/TrEMBL
  Q3UAX1_MOUSE UniProtKB/TrEMBL
  Q3UD36_MOUSE UniProtKB/TrEMBL
  Q3V2S4_MOUSE UniProtKB/TrEMBL
  Q5FWJ3 ENTREZGENE, UniProtKB/TrEMBL
  VIME_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O08704 UniProtKB/Swiss-Prot
  Q8CCH1 UniProtKB/Swiss-Prot