Gorasp1 (golgi reassembly stacking protein 1) - Rat Genome Database
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Gene: Gorasp1 (golgi reassembly stacking protein 1) Mus musculus
Analyze
Symbol: Gorasp1
Name: golgi reassembly stacking protein 1
RGD ID: 733107
MGI Page MGI
Description: Predicted to have metal ion binding activity. Involved in Golgi organization and protein N-linked glycosylation. Localizes to Golgi apparatus. Is expressed in cortical layer V and hippocampus CA1. Orthologous to human GORASP1 (golgi reassembly stacking protein 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 5430411C10Rik; GOL; golgi peripheral membrane protein p65; Golgi reassembly-stacking protein 1; golgi reassembly-stacking protein of 65 kDa; GOLPH5; GRA; GRASP65; P6; P65
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,754,739 - 119,766,624 (-)NCBIGRCm39mm39
GRCm389119,925,673 - 119,937,558 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,925,257 - 119,937,565 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,834,791 - 119,846,676 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,774,371 - 119,786,256 (-)NCBImm8
Celera9120,392,893 - 120,404,786 (-)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
Golgi apparatus  (IBA,IDA,ISO)
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:15767678   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:20360068  
PMID:21111240   PMID:21677750   PMID:21873635   PMID:22841714   PMID:24367100   PMID:24795147   PMID:26496610   PMID:26924201   PMID:29587143   PMID:31666509  


Genomics

Comparative Map Data
Gorasp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,754,739 - 119,766,624 (-)NCBIGRCm39mm39
GRCm389119,925,673 - 119,937,558 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,925,257 - 119,937,565 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,834,791 - 119,846,676 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,774,371 - 119,786,256 (-)NCBImm8
Celera9120,392,893 - 120,404,786 (-)NCBICelera
Cytogenetic Map9F4NCBI
GORASP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,096,659 - 39,108,363 (-)EnsemblGRCh38hg38GRCh38
GRCh38339,096,599 - 39,107,843 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,138,090 - 39,149,854 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,113,095 - 39,124,134 (-)NCBINCBI36hg18NCBI36
Build 34339,113,094 - 39,124,134NCBI
Celera339,078,594 - 39,089,634 (-)NCBI
Cytogenetic Map3p22.2NCBI
HuRef339,180,011 - 39,191,775 (-)NCBIHuRef
CHM1_1339,089,163 - 39,100,931 (-)NCBICHM1_1
Gorasp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08128,610,290 - 128,622,337 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,610,291 - 128,622,337 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,811,973 - 127,824,020 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,883,445 - 124,895,149 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18124,903,186 - 124,914,863 (-)NCBI
Celera8118,802,215 - 118,813,913 (-)NCBICelera
Cytogenetic Map8q32NCBI
Gorasp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,862,346 - 24,870,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,862,253 - 24,873,710 (+)NCBIChiLan1.0ChiLan1.0
GORASP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1339,273,272 - 39,285,008 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,273,272 - 39,285,008 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0338,992,863 - 39,004,586 (-)NCBIMhudiblu_PPA_v0panPan3
GORASP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl238,766,243 - 8,776,288 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1238,766,243 - 8,776,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gorasp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647328,351,669 - 28,362,062 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GORASP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,786,245 - 23,797,487 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,786,245 - 23,797,508 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,045,884 - 26,057,044 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GORASP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115308,445 - 319,309 (+)NCBI
ChlSab1.1 Ensembl15308,649 - 317,728 (+)Ensembl
Gorasp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247311,873,474 - 1,884,712 (+)NCBI

Position Markers
AW743035  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389119,928,255 - 119,928,937UniSTSGRCm38
MGSCv379119,837,373 - 119,838,055UniSTSGRCm37
Celera9120,395,475 - 120,396,157UniSTS
Cytogenetic Map9F4UniSTS
Whitehead/MRC_RH91179.91UniSTS
D9Mit216  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389119,934,993 - 119,935,122UniSTSGRCm38
MGSCv379119,844,111 - 119,844,240UniSTSGRCm37
Celera9120,402,221 - 120,402,350UniSTS
Cytogenetic Map9F4UniSTS
cM Map970.0UniSTS
Whitehead Genetic967.8UniSTS
MARC_16103-16104:1018028206:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389119,932,759 - 119,933,310UniSTSGRCm38
MGSCv379119,841,877 - 119,842,428UniSTSGRCm37
Celera9120,399,987 - 120,400,538UniSTS
Cytogenetic Map9F4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:821
Count of miRNA genes:480
Interacting mature miRNAs:555
Transcripts:ENSMUST00000035099
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035099   ⟹   ENSMUSP00000035099
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9119,925,257 - 119,937,565 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213409
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9119,933,050 - 119,937,550 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9119,929,989 - 119,932,852 (-)Ensembl
RefSeq Acc Id: NM_028976   ⟹   NP_083252
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,754,739 - 119,766,624 (-)NCBI
GRCm389119,925,673 - 119,937,558 (-)ENTREZGENE
MGSCv379119,834,791 - 119,846,676 (-)RGD
Celera9120,392,893 - 120,404,786 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_083252   ⟸   NM_028976
- UniProtKB: Q91X51 (UniProtKB/Swiss-Prot),   Q3TCN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000035099   ⟸   ENSMUST00000035099
Protein Domains
PDZ GRASP-type

Promoters
RGD ID:6848411
Promoter ID:MM_ACW:52417
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Liver
Transcripts:GORASP1.ASEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369119,841,766 - 119,842,917 (-)MPROMDB
RGD ID:6845288
Promoter ID:MM_KWN:59151
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_028735,   NM_028976,   UC009SBR.1,   UC009SBS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369119,846,374 - 119,846,874 (+)MPROMDB
RGD ID:8671206
Promoter ID:EPDNEW_M13634
Type:multiple initiation site
Name:Gorasp1_1
Description:Mus musculus golgi reassembly stacking protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389119,937,550 - 119,937,610EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921748 AgrOrtholog
Ensembl Genes ENSMUSG00000032513 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000035099 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000035099 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GRASP55/65_PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GRASP55_65 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74498 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921748 ENTREZGENE
NCBI Gene 74498 ENTREZGENE
PANTHER PTHR12893 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GRASP55_65 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gorasp1 PhenoGen
PROSITE PDZ_GRASP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.104789 ENTREZGENE
UniProt GORS1_MOUSE UniProtKB/Swiss-Prot
  Q3TCN5 ENTREZGENE, UniProtKB/TrEMBL
  Q91X51 ENTREZGENE
UniProt Secondary Q9D3L9 UniProtKB/Swiss-Prot