Rbm10 (RNA binding motif protein 10) - Rat Genome Database

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Gene: Rbm10 (RNA binding motif protein 10) Mus musculus
Analyze
Symbol: Rbm10
Name: RNA binding motif protein 10
RGD ID: 732879
MGI Page MGI
Description: Predicted to enable identical protein binding activity and miRNA binding activity. Acts upstream of or within negative regulation of RNA metabolic process; negative regulation of vascular associated smooth muscle cell proliferation; and positive regulation of vascular associated smooth muscle cell apoptotic process. Predicted to be located in nuclear speck. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Is expressed in several structures, including branchial arch; central nervous system; early conceptus; oocyte; and sensory organ. Human ortholog(s) of this gene implicated in TARP syndrome; colorectal cancer; lung adenocarcinoma; and lung cancer. Orthologous to human RBM10 (RNA binding motif protein 10).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E430039K10Rik; MGC7826; RNA-binding motif protein 10; RNA-binding protein 10
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12799  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,483,596 - 20,517,128 (+)NCBIGRCm39mm39
GRCm39 EnsemblX20,483,742 - 20,517,140 (+)Ensembl
GRCm38X20,617,357 - 20,650,889 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,617,503 - 20,650,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X20,194,629 - 20,228,031 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X19,776,955 - 19,807,848 (+)NCBImm8
CeleraX18,748,266 - 18,781,340 (+)NCBICelera
Cytogenetic MapXA1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing. Imielinski M, etal., Cell. 2012 Sep 14;150(6):1107-20. doi: 10.1016/j.cell.2012.08.029.
2. Increased cell apoptosis in human lung adenocarcinoma and in vivo tumor growth inhibition by RBM10, a tumor suppressor gene. Ji Y, etal., Oncol Lett. 2017 Oct;14(4):4663-4669. doi: 10.3892/ol.2017.6765. Epub 2017 Aug 17.
3. RBM10 inhibits cell proliferation of lung adenocarcinoma via RAP1/AKT/CREB signalling pathway. Jin X, etal., J Cell Mol Med. 2019 Jun;23(6):3897-3904. doi: 10.1111/jcmm.14263. Epub 2019 Apr 6.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. A Splicing-Independent Function of RBM10 Controls Specific 3' UTR Processing to Regulate Cardiac Hypertrophy. Mohan N, etal., Cell Rep. 2018 Sep 25;24(13):3539-3553. doi: 10.1016/j.celrep.2018.08.077.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive genomic profile of Chinese lung cancer patients and mutation characteristics of individuals resistant to icotinib/gefitinib. Shang Y, etal., Sci Rep. 2020 Nov 20;10(1):20243. doi: 10.1038/s41598-020-76791-y.
12. Germline Profiling and Molecular Characterization of Early Onset Metastatic Colorectal Cancer. Xu T, etal., Front Oncol. 2020 Oct 19;10:568911. doi: 10.3389/fonc.2020.568911. eCollection 2020.
13. A gene mutation in RNA-binding protein 10 is associated with lung adenocarcinoma progression and poor prognosis. Yin LL, etal., Oncol Lett. 2018 Nov;16(5):6283-6292. doi: 10.3892/ol.2018.9496. Epub 2018 Sep 24.
14. Protective effect of the RNA-binding protein RBM10 in hepatocellular carcinoma. Zhao Z, etal., Eur Rev Med Pharmacol Sci. 2020 Jun;24(11):6005-6013. doi: 10.26355/eurrev_202006_21494.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12693553   PMID:12904583   PMID:14610273  
PMID:15618518   PMID:15782199   PMID:15840001   PMID:16033648   PMID:16141072   PMID:16141073   PMID:18315527   PMID:18799693   PMID:19508861   PMID:20412781   PMID:20451169   PMID:20548051  
PMID:21267068   PMID:21327095   PMID:21677750   PMID:21873635   PMID:23636947   PMID:26784654   PMID:27763814   PMID:28378742   PMID:29309623   PMID:30196744   PMID:30457570   PMID:31138677  


Genomics

Comparative Map Data
Rbm10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,483,596 - 20,517,128 (+)NCBIGRCm39mm39
GRCm39 EnsemblX20,483,742 - 20,517,140 (+)Ensembl
GRCm38X20,617,357 - 20,650,889 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,617,503 - 20,650,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X20,194,629 - 20,228,031 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X19,776,955 - 19,807,848 (+)NCBImm8
CeleraX18,748,266 - 18,781,340 (+)NCBICelera
Cytogenetic MapXA1.3NCBI
RBM10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,145,221 - 47,186,813 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX47,145,221 - 47,186,813 (+)EnsemblGRCh38hg38GRCh38
GRCh37X47,004,620 - 47,046,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X46,889,575 - 46,931,156 (+)NCBINCBI36hg18NCBI36
Build 34X46,760,884 - 46,802,465NCBI
CeleraX51,199,950 - 51,241,502 (+)NCBI
Cytogenetic MapXp11.3NCBI
HuRefX44,705,144 - 44,757,310 (+)NCBIHuRef
CHM1_1X47,036,374 - 47,077,701 (+)NCBICHM1_1
T2T-CHM13v2.0X46,554,946 - 46,596,509 (+)NCBI
Rbm10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X1,540,399 - 1,572,571 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX1,540,398 - 1,572,575 (-)Ensembl
Rnor_6.0X1,754,869 - 1,786,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,754,861 - 1,786,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X2,548,300 - 2,580,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X12,957,747 - 12,989,619 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X12,963,302 - 12,995,175 (-)NCBI
CeleraX2,104,400 - 2,136,451 (-)NCBICelera
Cytogenetic MapXq11NCBI
Rbm10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516904,062 - 934,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955516904,852 - 934,313 (-)NCBIChiLan1.0ChiLan1.0
RBM10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X47,440,586 - 47,481,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,440,815 - 47,481,204 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X39,582,480 - 39,623,749 (+)NCBIMhudiblu_PPA_v0panPan3
RBM10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X40,746,959 - 40,776,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX40,747,178 - 40,776,742 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,122,366 - 15,151,898 (+)NCBI
ROS_Cfam_1.0X40,881,422 - 40,910,736 (+)NCBI
ROS_Cfam_1.0 EnsemblX40,881,685 - 40,910,731 (+)Ensembl
UMICH_Zoey_3.1X40,869,124 - 40,898,424 (+)NCBI
UNSW_CanFamBas_1.0X40,856,781 - 40,886,306 (+)NCBI
UU_Cfam_GSD_1.0X40,949,871 - 40,979,406 (+)NCBI
Rbm10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,083,132 - 33,111,429 (+)NCBI
SpeTri2.0NW_00493650212,923,890 - 12,952,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX41,773,232 - 41,803,653 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X41,773,232 - 41,803,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X46,808,876 - 46,820,384 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,339,653 - 44,373,509 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX44,339,877 - 44,373,339 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660769,597,361 - 9,631,993 (+)NCBIVero_WHO_p1.0
Rbm10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248873,923,986 - 3,957,133 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248873,921,934 - 3,953,739 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Rbm10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA1.3UniSTS
Cytogenetic Map1BUniSTS
cM MapX UniSTS
UniSTS:234099  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384102,048,985 - 102,049,345UniSTSGRCm38
GRCm38133,838,539 - 33,838,884UniSTSGRCm38
MGSCv37133,895,384 - 33,895,729UniSTSGRCm37
MGSCv374101,721,590 - 101,721,950UniSTSGRCm37
Celera4100,400,403 - 100,400,763UniSTS
Celera133,613,058 - 33,613,403UniSTS
Cytogenetic MapXA1.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map4C6UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:770
Count of miRNA genes:236
Interacting mature miRNAs:246
Transcripts:ENSMUST00000064911, ENSMUST00000082089, ENSMUST00000084383, ENSMUST00000115374, ENSMUST00000115375, ENSMUST00000141128, ENSMUST00000177738
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001167775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001167776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK041871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000064911   ⟹   ENSMUSP00000068188
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,486,337 - 20,516,923 (+)Ensembl
GRCm38.p6 EnsemblX20,620,098 - 20,650,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000082089   ⟹   ENSMUSP00000080738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,486,337 - 20,516,923 (+)Ensembl
GRCm38.p6 EnsemblX20,620,098 - 20,650,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000084383   ⟹   ENSMUSP00000111031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,484,022 - 20,517,140 (+)Ensembl
GRCm38.p6 EnsemblX20,617,783 - 20,650,901 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115374   ⟹   ENSMUSP00000111032
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,483,861 - 20,517,140 (+)Ensembl
GRCm38.p6 EnsemblX20,617,622 - 20,650,901 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115375   ⟹   ENSMUSP00000111033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,483,742 - 20,517,127 (+)Ensembl
GRCm38.p6 EnsemblX20,617,503 - 20,650,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141128
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,484,024 - 20,515,435 (+)Ensembl
GRCm38.p6 EnsemblX20,617,785 - 20,649,196 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177738   ⟹   ENSMUSP00000136209
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX20,486,337 - 20,516,923 (+)Ensembl
GRCm38.p6 EnsemblX20,620,098 - 20,650,684 (+)Ensembl
RefSeq Acc Id: NM_001167775   ⟹   NP_001161247
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,742 - 20,517,128 (+)NCBI
GRCm38X20,617,503 - 20,650,889 (+)NCBI
MGSCv37X20,194,629 - 20,228,031 (+)RGD
CeleraX18,748,266 - 18,781,340 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001167776   ⟹   NP_001161248
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,742 - 20,517,128 (+)NCBI
GRCm38X20,617,503 - 20,650,889 (+)NCBI
MGSCv37X20,194,629 - 20,228,031 (+)RGD
CeleraX18,748,266 - 18,781,340 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358903   ⟹   NP_001345832
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,742 - 20,517,128 (+)NCBI
GRCm38X20,617,503 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358904   ⟹   NP_001345833
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,742 - 20,517,128 (+)NCBI
GRCm38X20,617,503 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358905   ⟹   NP_001345834
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,742 - 20,517,128 (+)NCBI
GRCm38X20,617,503 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145627   ⟹   NP_663602
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,742 - 20,517,128 (+)NCBI
GRCm38X20,617,503 - 20,650,889 (+)NCBI
MGSCv37X20,194,629 - 20,228,031 (+)RGD
CeleraX18,748,266 - 18,781,340 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527621   ⟹   XP_006527684
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,484,006 - 20,517,128 (+)NCBI
GRCm38X20,617,767 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251316   ⟹   XP_030107176
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,484,002 - 20,517,128 (+)NCBI
GRCm38X20,617,763 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251317   ⟹   XP_030107177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,483,596 - 20,517,128 (+)NCBI
GRCm38X20,617,357 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251318   ⟹   XP_030107178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,484,016 - 20,517,128 (+)NCBI
GRCm38X20,617,777 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251319   ⟹   XP_030107179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,484,024 - 20,517,128 (+)NCBI
GRCm38X20,617,785 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251320   ⟹   XP_030107180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,484,199 - 20,517,128 (+)NCBI
GRCm38X20,617,960 - 20,650,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161916   ⟹   XP_036017809
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,484,235 - 20,517,128 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_663602   ⟸   NM_145627
- Peptide Label: isoform 1
- UniProtKB: Q99KG3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161247   ⟸   NM_001167775
- Peptide Label: isoform 2
- UniProtKB: Q99KG3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161248   ⟸   NM_001167776
- Peptide Label: isoform 3
- UniProtKB: Q99KG3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527684   ⟸   XM_006527621
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030107177   ⟸   XM_030251317
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001345832   ⟸   NM_001358903
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001345833   ⟸   NM_001358904
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001345834   ⟸   NM_001358905
- Peptide Label: isoform 5
RefSeq Acc Id: XP_030107176   ⟸   XM_030251316
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030107178   ⟸   XM_030251318
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030107179   ⟸   XM_030251319
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030107180   ⟸   XM_030251320
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000111031   ⟸   ENSMUST00000084383
RefSeq Acc Id: ENSMUSP00000136209   ⟸   ENSMUST00000177738
RefSeq Acc Id: ENSMUSP00000111032   ⟸   ENSMUST00000115374
RefSeq Acc Id: ENSMUSP00000111033   ⟸   ENSMUST00000115375
RefSeq Acc Id: ENSMUSP00000068188   ⟸   ENSMUST00000064911
RefSeq Acc Id: ENSMUSP00000080738   ⟸   ENSMUST00000082089
RefSeq Acc Id: XP_036017809   ⟸   XM_036161916
- Peptide Label: isoform X1
Protein Domains
G-patch   RanBP2-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99KG3-F1-model_v2 AlphaFold Q99KG3 1-930 view protein structure

Promoters
RGD ID:6846249
Promoter ID:MM_KWN:59734
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000115374,   ENSMUST00000115376,   NM_001167775,   NM_001167776,   UC009STG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X20,194,631 - 20,195,202 (+)MPROMDB
RGD ID:6846251
Promoter ID:MM_KWN:59735
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009STJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X20,196,101 - 20,197,502 (+)MPROMDB
RGD ID:6846248
Promoter ID:MM_KWN:59736
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000064911,   ENSMUST00000082089
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X20,212,646 - 20,213,146 (+)MPROMDB
RGD ID:6846250
Promoter ID:MM_KWN:59737
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC009STK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X20,224,146 - 20,224,897 (+)MPROMDB
RGD ID:13680184
Promoter ID:EPDNEW_M24241
Type:initiation region
Name:Rbm10_1
Description:Mus musculus RNA binding motif protein 10 , transcript variant6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X20,617,812 - 20,617,872EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384310 AgrOrtholog
Ensembl Genes ENSMUSG00000031060 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000068188 UniProtKB/Swiss-Prot
  ENSMUSP00000080738 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000111031 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000111032 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000111033 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000136209 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000064911 UniProtKB/Swiss-Prot
  ENSMUST00000082089 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000084383 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000115374 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000115375 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000177738 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OCRE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM10_OCRE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM10_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot
  Znf_RanBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:236732 UniProtKB/Swiss-Prot
MGD MGI:2384310 ENTREZGENE
NCBI Gene 236732 ENTREZGENE
PANTHER PTHR13948:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam G-patch UniProtKB/Swiss-Prot
  OCRE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RanBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbm10 PhenoGen
PROSITE G_PATCH UniProtKB/Swiss-Prot
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART G_patch UniProtKB/Swiss-Prot
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q566J0_MOUSE UniProtKB/TrEMBL
  Q8BY56_MOUSE UniProtKB/TrEMBL
  Q99KG3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TIY0 UniProtKB/Swiss-Prot
  Q3U5B8 UniProtKB/Swiss-Prot
  Q3UKI8 UniProtKB/Swiss-Prot
  Q80U75 UniProtKB/Swiss-Prot
  Q8BTP8 UniProtKB/Swiss-Prot