Nr4a1 (nuclear receptor subfamily 4, group A, member 1) - Rat Genome Database

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Gene: Nr4a1 (nuclear receptor subfamily 4, group A, member 1) Mus musculus
Analyze
Symbol: Nr4a1
Name: nuclear receptor subfamily 4, group A, member 1
RGD ID: 732752
MGI Page MGI
Description: Enables several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and lipopolysaccharide binding activity. Involved in several processes, including cellular response to corticotropin-releasing hormone stimulus; detection of lipopolysaccharide; and non-canonical inflammasome complex assembly. Acts upstream of or within several processes, including positive regulation of apoptotic process; positive regulation of transcription by RNA polymerase II; and skeletal muscle cell differentiation. Located in cytosol and nucleus. Part of chromatin and transcription regulator complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system; and peripheral nervous system. Orthologous to human NR4A1 (nuclear receptor subfamily 4 group A member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gf; GFR; Gfrp; GFRP1; Hbr; Hbr-; Hbr-1; Hbr1; Hm; Hmr; hormone receptor; N1; N10; NGFI; NGFI-B; NGFIB; NP; NP10; nuclear hormone receptor NUR/77; nuclear protein N10; nuclear receptor subfamily 4 group A member 1; Nur; nur77; NUR77-1; NUR77-2; orphan nuclear receptor HMR; TI; TIS1; TR; TR3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,151,783 - 101,172,676 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,152,150 - 101,172,676 (+)EnsemblGRCm39 Ensembl
GRCm3815101,253,902 - 101,274,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,254,269 - 101,274,795 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,097,277 - 101,105,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,094,896 - 101,102,826 (+)NCBIMGSCv36mm8
Celera15103,414,983 - 103,422,853 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(R)-pantothenic acid  (EXP)
(S)-amphetamine  (EXP)
(S)-nicotine  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,2,4-trimethylbenzene  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3,5-dichloro-N-[[(2S)-1-ethyl-2-pyrrolidinyl]methyl]-2-hydroxy-6-methoxybenzamide  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (EXP)
3-methylcholanthrene  (EXP)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4,5,6,7-TETRABROMOBENZOTRIAZOLE  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
8-Br-cAMP  (EXP,ISO)
8-OH-DPAT  (ISO)
acetaldehyde  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-amanitin  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
aristolochic acid A  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
ATP  (ISO)
atrazine  (ISO)
bellidifolin  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (EXP)
bisphenol F  (ISO)
bucladesine  (EXP,ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
C.I. Natural Red 20  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
Calcimycin  (EXP)
calcitriol  (ISO)
camptothecin  (ISO)
cantharidin  (EXP)
capecitabine  (ISO)
carbachol  (ISO)
carbon nanotube  (EXP)
carbonyl sulfide  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP,ISO)
Chorionic gonadotropin  (ISO)
cisplatin  (EXP,ISO)
clozapine  (ISO)
cocaine  (ISO)
colforsin daropate hydrochloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cycloheximide  (ISO)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (ISO)
cypermethrin  (EXP)
D-glucopyranose 6-phosphate  (EXP)
D-penicillamine  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
dapsone  (ISO)
DDE  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diethyl hydrogen phosphate  (EXP,ISO)
dimethylselenide  (ISO)
dinophysistoxin 1  (ISO)
dipentyl phthalate  (ISO)
doxorubicin  (EXP,ISO)
doxycycline  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
febuxostat  (ISO)
fenofibrate  (ISO)
fenthion  (ISO)
fluoranthene  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (ISO)
glutathione  (ISO)
glycerol  (EXP)
glycidol  (ISO)
glycitein  (ISO)
glycitin  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
haloperidol  (EXP,ISO)
hydrogen peroxide  (ISO)
Ibotenic acid  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
inulin  (EXP)
isoprenaline  (EXP)
kainic acid  (EXP,ISO)
kenpaullone  (ISO)
ketorolac  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
leptomycin B  (ISO)
linsidomine  (ISO)
lipopolysaccharide  (EXP,ISO)
malathion  (ISO)
mancozeb  (EXP)
maneb  (EXP)
menadione  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
morphine  (EXP)
Muraglitazar  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP,ISO)
N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclohexanecarboxamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
naphthalenes  (ISO)
nickel atom  (EXP)
nickel sulfate  (ISO)
niclosamide  (ISO)
nicotinamide  (EXP)
nicotine  (EXP)
nitric oxide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
paricalcitol  (ISO)
pentetrazol  (EXP)
pentobarbital  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenformin  (ISO)
phenobarbital  (EXP)
phorbol 13-acetate 12-myristate  (EXP,ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pinostrobin  (ISO)
pioglitazone  (EXP)
potassium atom  (ISO)
potassium chloride  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
proanthocyanidin  (ISO)
progesterone  (EXP,ISO)
pyridaben  (EXP)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
ranitidine  (ISO)
reactive oxygen species  (ISO)
Rebamipide  (ISO)
rotenone  (ISO)
ryanodine  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (EXP)
scopolamine  (ISO)
sevoflurane  (ISO)
Shikonin  (EXP)
silicon dioxide  (EXP,ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
sodium hypochlorite  (ISO)
Soman  (ISO)
styrene  (EXP)
succinic acid  (EXP)
sulforaphane  (EXP)
T-2 toxin  (ISO)
tamoxifen  (EXP)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
torcetrapib  (ISO)
triazolam  (EXP)
tributylstannane  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triphenylstannane  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (EXP)
undecane  (ISO)
urethane  (ISO)
vinclozolin  (ISO)
zearalenone  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IDA)
cytoplasm  (IEA)
cytosol  (IDA,ISO)
mitochondrion  (ISO)
nuclear membrane  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO)
transcription regulator complex  (IBA,IDA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Orphan nuclear receptor Nur77 promotes acute kidney injury and renal epithelial apoptosis. Balasubramanian S, etal., J Am Soc Nephrol. 2012 Apr;23(4):674-86. doi: 10.1681/ASN.2011070646. Epub 2012 Feb 16.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Genetic disruption of the nuclear receptor Nur77 (Nr4a1) in rat reduces dopamine cell loss and l-Dopa-induced dyskinesia in experimental Parkinson's disease. Rouillard C, etal., Exp Neurol. 2018 Jun;304:143-153. doi: 10.1016/j.expneurol.2018.03.008. Epub 2018 Mar 9.
10. Genetic susceptibility and loss of Nr4a1 enhances macrophage-mediated renal injury in CKD. Westbrook L, etal., J Am Soc Nephrol. 2014 Nov;25(11):2499-510. doi: 10.1681/ASN.2013070786. Epub 2014 Apr 10.
11. Gene expression profile and overexpression of apoptosis-related genes (NGFI-B and Gadd 45 gamma) in early phase of Thy-1 nephritis model. Xu JH, etal., Cell Tissue Res. 2006 Oct;326(1):159-68. doi: 10.1007/s00441-006-0214-4. Epub 2006 May 31.
Additional References at PubMed
PMID:1491694   PMID:2283997   PMID:2555161   PMID:3185562   PMID:3186734   PMID:7552993   PMID:7623827   PMID:7624775   PMID:7768965   PMID:7877627   PMID:8643610   PMID:8666944  
PMID:8961274   PMID:9155013   PMID:9466414   PMID:9858508   PMID:9858769   PMID:10349636   PMID:10395577   PMID:10523643   PMID:11042159   PMID:11076861   PMID:11232309   PMID:11860499  
PMID:12021184   PMID:12082103   PMID:12153396   PMID:12223510   PMID:12477932   PMID:12529383   PMID:12538520   PMID:12782711   PMID:12815108   PMID:14603264   PMID:14610273   PMID:14657025  
PMID:14726490   PMID:14991612   PMID:15063754   PMID:15155786   PMID:15385570   PMID:15459248   PMID:15489334   PMID:15618518   PMID:15640143   PMID:15701640   PMID:15728833   PMID:15731112  
PMID:15782199   PMID:15813958   PMID:15871945   PMID:15910281   PMID:15910753   PMID:15964844   PMID:16051191   PMID:16141072   PMID:16141073   PMID:16223362   PMID:16237153   PMID:16288200  
PMID:16339277   PMID:16466956   PMID:16520388   PMID:16602821   PMID:16673448   PMID:16723716   PMID:16869965   PMID:16906154   PMID:16930409   PMID:16971476   PMID:17082578   PMID:17167038  
PMID:17242285   PMID:17434920   PMID:17463053   PMID:17515897   PMID:17588685   PMID:17701362   PMID:17785466   PMID:18086558   PMID:18287559   PMID:18292087   PMID:18388149   PMID:18429814  
PMID:18443228   PMID:18509529   PMID:18599618   PMID:18799693   PMID:18809462   PMID:18835829   PMID:18945812   PMID:18949369   PMID:19030180   PMID:19153266   PMID:19237150   PMID:19321449  
PMID:19386638   PMID:19465082   PMID:19741162   PMID:20059953   PMID:20178987   PMID:20189954   PMID:20368287   PMID:20375256   PMID:20381497   PMID:20388790   PMID:20472563   PMID:20932939  
PMID:21205929   PMID:21239615   PMID:21267068   PMID:21357543   PMID:21468021   PMID:21525287   PMID:21621845   PMID:21677750   PMID:21725321   PMID:21726557   PMID:21730126   PMID:21873635  
PMID:21873734   PMID:21979916   PMID:21986493   PMID:22147266   PMID:22186412   PMID:22194622   PMID:22194623   PMID:22345564   PMID:22427340   PMID:22539306   PMID:22575506   PMID:22683664  
PMID:22761936   PMID:22792320   PMID:22983157   PMID:22988430   PMID:22996661   PMID:23078765   PMID:23161447   PMID:23183170   PMID:23197407   PMID:23250487   PMID:23288947   PMID:23315169  
PMID:23334790   PMID:23342015   PMID:23536182   PMID:23552735   PMID:23747037   PMID:23836374   PMID:24005216   PMID:24133167   PMID:24166953   PMID:24210819   PMID:24485460   PMID:24498071  
PMID:24512812   PMID:24584437   PMID:24625784   PMID:24647738   PMID:24680679   PMID:24694307   PMID:24706823   PMID:24740500   PMID:24753204   PMID:24885573   PMID:24952961   PMID:24976215  
PMID:25140527   PMID:25269081   PMID:25284014   PMID:25307349   PMID:25326539   PMID:25471687   PMID:25576055   PMID:25576519   PMID:25581517   PMID:25605333   PMID:25605944   PMID:25657047  
PMID:25687757   PMID:25762306   PMID:25822914   PMID:25899083   PMID:26091486   PMID:26113803   PMID:26157144   PMID:26170382   PMID:26173181   PMID:26241646   PMID:26304965   PMID:26363057  
PMID:26393668   PMID:26416771   PMID:26486271   PMID:26523867   PMID:26564988   PMID:26597820   PMID:26634653   PMID:26647388   PMID:26874000   PMID:26932821   PMID:27036891   PMID:27076431  
PMID:27163549   PMID:27264183   PMID:27412700   PMID:27428650   PMID:27430727   PMID:27600773   PMID:27668656   PMID:27769911   PMID:27797962   PMID:27814941   PMID:27871853   PMID:27876882  
PMID:27889907   PMID:28002729   PMID:28111880   PMID:28170411   PMID:28170423   PMID:28240261   PMID:28321121   PMID:28329706   PMID:28342843   PMID:28388439   PMID:28411187   PMID:28412351  
PMID:28538176   PMID:28615357   PMID:28622293   PMID:28729074   PMID:28775000   PMID:28813661   PMID:28823847   PMID:28834747   PMID:28860151   PMID:28935758   PMID:28947542   PMID:28962999  
PMID:28981157   PMID:29053748   PMID:29166589   PMID:29227474   PMID:29247651   PMID:29282309   PMID:29295823   PMID:29343483   PMID:29414782   PMID:29437594   PMID:29470798   PMID:29521626  
PMID:29536159   PMID:29846361   PMID:29850786   PMID:29949664   PMID:30006349   PMID:30044048   PMID:30072431   PMID:30077998   PMID:30089271   PMID:30111591   PMID:30111648   PMID:30123220  
PMID:30134173   PMID:30136162   PMID:30254013   PMID:30265749   PMID:30277475   PMID:30565708   PMID:30696767   PMID:30814730   PMID:30814732   PMID:30821173   PMID:30930165   PMID:30962292  
PMID:30981499   PMID:31115481   PMID:31152140   PMID:31445702   PMID:31461311   PMID:31465766   PMID:31481690   PMID:31541002   PMID:31801071   PMID:31813231   PMID:31907354   PMID:31980629  
PMID:32084204   PMID:32121597   PMID:32165624   PMID:32459864   PMID:32542822   PMID:32610475   PMID:32868928   PMID:32873797   PMID:32907369   PMID:32907815   PMID:33086070   PMID:33087562  
PMID:33098771   PMID:33124187   PMID:33147449   PMID:33332077   PMID:33378407   PMID:33462137   PMID:33562500   PMID:33621212   PMID:33665581   PMID:33839408   PMID:33911218   PMID:33971110  
PMID:33990575   PMID:34109683   PMID:34288735   PMID:34321999   PMID:34343134   PMID:34416161   PMID:34469720   PMID:34529077   PMID:34571009   PMID:34645818   PMID:34911964   PMID:34972249  
PMID:35177587   PMID:35181992   PMID:35182611   PMID:35222801   PMID:35228744   PMID:35464766   PMID:35661620   PMID:35757735   PMID:35915179   PMID:36250380   PMID:36264674   PMID:36623453  
PMID:36741412   PMID:36883265   PMID:36928411   PMID:36976180   PMID:37001519   PMID:37161357   PMID:37216116   PMID:37382273   PMID:37486903   PMID:37833706   PMID:37858232   PMID:37965920  
PMID:37971565   PMID:38158109   PMID:38290383   PMID:38301909   PMID:38306930   PMID:38329873   PMID:38345443   PMID:38451819   PMID:38605605   PMID:38754414   PMID:38763048   PMID:38823016  


Genomics

Comparative Map Data
Nr4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,151,783 - 101,172,676 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,152,150 - 101,172,676 (+)EnsemblGRCm39 Ensembl
GRCm3815101,253,902 - 101,274,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,254,269 - 101,274,795 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,097,277 - 101,105,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,094,896 - 101,102,826 (+)NCBIMGSCv36mm8
Celera15103,414,983 - 103,422,853 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.64NCBI
NR4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,022,832 - 52,059,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,022,832 - 52,059,507 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,416,616 - 52,453,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,731,458 - 50,739,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 341250,723,762 - 50,736,019NCBI
Celera1251,247,867 - 51,255,961 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,449,770 - 49,486,519 (+)NCBIHuRef
CHM1_11252,382,884 - 52,419,560 (+)NCBICHM1_1
T2T-CHM13v2.01251,986,402 - 52,023,082 (+)NCBIT2T-CHM13v2.0
Nr4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,247,153 - 134,268,044 (+)NCBIGRCr8
mRatBN7.27132,368,399 - 132,389,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,374,840 - 132,389,297 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,182,933 - 134,190,833 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,412,449 - 136,420,349 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,322,869 - 136,330,773 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,899,358 - 142,920,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,905,758 - 142,920,216 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,700,242 - 140,721,073 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,012,807 - 140,020,590 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,089,243 - 140,097,024 (+)NCBI
Celera7128,846,928 - 128,854,640 (+)NCBICelera
Cytogenetic Map7q36NCBI
Nr4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,404,532 - 2,431,050 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,404,532 - 2,426,882 (+)NCBIChiLan1.0ChiLan1.0
NR4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21042,136,340 - 42,158,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11242,133,103 - 42,154,924 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,703,903 - 36,740,211 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,480,300 - 37,498,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,480,300 - 37,501,188 (-)Ensemblpanpan1.1panPan2
NR4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,947,729 - 2,965,045 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,891,053 - 2,955,655 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,300,499 - 43,308,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,944,790 - 2,966,939 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,939,797 - 2,965,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,961,332 - 2,969,256 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,947,820 - 2,955,733 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,698,715 - 43,706,655 (+)NCBIUU_Cfam_GSD_1.0
Nr4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,656,496 - 63,678,740 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,499,754 - 9,508,423 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,486,096 - 9,508,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,208,354 - 48,232,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,208,587 - 48,233,063 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,859,302 - 197,884,070 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816267,303 - 293,227 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816271,345 - 288,265 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr4a1
461 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:174
Interacting mature miRNAs:184
Transcripts:ENSMUST00000023779
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
Nr4a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15FUniSTS
cM Map1556.64UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001411253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA930162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY292808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC025812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX258733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX258734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X16995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000023779   ⟹   ENSMUSP00000023779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,164,727 - 101,172,676 (+)Ensembl
GRCm38.p6 Ensembl15101,266,846 - 101,274,795 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228985   ⟹   ENSMUSP00000155225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,152,150 - 101,172,676 (+)Ensembl
GRCm38.p6 Ensembl15101,254,269 - 101,274,795 (+)Ensembl
Ensembl Acc Id: ENSMUST00000230814   ⟹   ENSMUSP00000155056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,164,727 - 101,168,005 (+)Ensembl
GRCm38.p6 Ensembl15101,266,846 - 101,270,124 (+)Ensembl
Ensembl Acc Id: ENSMUST00000231153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,170,742 - 101,171,728 (+)Ensembl
GRCm38.p6 Ensembl15101,272,861 - 101,273,847 (+)Ensembl
RefSeq Acc Id: NM_001411253   ⟹   NP_001398182
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,152,105 - 101,172,676 (+)NCBI
RefSeq Acc Id: NM_001411254   ⟹   NP_001398183
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,151,783 - 101,172,676 (+)NCBI
RefSeq Acc Id: NM_010444   ⟹   NP_034574
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,164,728 - 101,172,676 (+)NCBI
GRCm3815101,266,846 - 101,274,795 (+)NCBI
MGSCv3715101,097,277 - 101,105,226 (+)RGD
Celera15103,414,983 - 103,422,853 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520455   ⟹   XP_006520518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,166,928 - 101,172,676 (+)NCBI
GRCm3815101,268,933 - 101,274,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006520459   ⟹   XP_006520522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,164,875 - 101,172,676 (+)NCBI
GRCm3815101,268,011 - 101,274,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316436   ⟹   XP_017171925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,155,261 - 101,172,676 (+)NCBI
GRCm3815101,257,434 - 101,274,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248339   ⟹   XP_030104199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,151,788 - 101,172,676 (+)NCBI
GRCm3815101,253,902 - 101,274,795 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938794
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,162,781 - 101,172,676 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938795
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,151,997 - 101,172,676 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938796
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,158,536 - 101,172,676 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938797
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,162,781 - 101,172,676 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034574   ⟸   NM_010444
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520522   ⟸   XM_006520459
- Peptide Label: isoform X1
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520518   ⟸   XM_006520455
- Peptide Label: isoform X1
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171925   ⟸   XM_017316436
- Peptide Label: isoform X1
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104199   ⟸   XM_030248339
- Peptide Label: isoform X1
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000155056   ⟸   ENSMUST00000230814
Ensembl Acc Id: ENSMUSP00000155225   ⟸   ENSMUST00000228985
Ensembl Acc Id: ENSMUSP00000023779   ⟸   ENSMUST00000023779
RefSeq Acc Id: NP_001398183   ⟸   NM_001411254
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398182   ⟸   NM_001411253
- UniProtKB: P12813 (UniProtKB/Swiss-Prot),   Q545Q1 (UniProtKB/TrEMBL)
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P12813-F1-model_v2 AlphaFold P12813 1-601 view protein structure

Promoters
RGD ID:6826283
Promoter ID:MM_KWN:19775
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_010444
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615101,096,731 - 101,097,532 (+)MPROMDB
RGD ID:6847230
Promoter ID:MM_ACW:19440
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Kidney,   Lung,   MEF_B6
Transcripts:NR4A1.BSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615101,100,141 - 101,100,832 (+)MPROMDB
RGD ID:8685110
Promoter ID:EPDNEW_M20582
Type:initiation region
Name:Nr4a1_1
Description:Mus musculus nuclear receptor subfamily 4, group A, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815101,266,847 - 101,266,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352454 AgrOrtholog
Ensembl Genes ENSMUSG00000023034 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023779 ENTREZGENE
  ENSMUST00000023779.8 UniProtKB/Swiss-Prot
  ENSMUST00000228985 ENTREZGENE
  ENSMUST00000228985.2 UniProtKB/Swiss-Prot
  ENSMUST00000230814.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_orp_HMR_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_orph_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1352454 ENTREZGENE
NCBI Gene 15370 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nr4a1 PhenoGen
PRINTS HMRNUCRECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEARECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VJZ1_MOUSE UniProtKB/TrEMBL
  NR4A1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q545Q1 ENTREZGENE, UniProtKB/TrEMBL