NR4A1 (nuclear receptor subfamily 4 group A member 1) - Rat Genome Database

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Gene: NR4A1 (nuclear receptor subfamily 4 group A member 1) Homo sapiens
Analyze
Symbol: NR4A1
Name: nuclear receptor subfamily 4 group A member 1
RGD ID: 732751
HGNC Page HGNC:7980
Description: Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in several processes, including cellular response to vascular endothelial growth factor stimulus; endothelial cell migration; and positive regulation of endothelial cell proliferation. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in cytosol; mitochondrion; and nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: early response protein NAK1; GFRP1; growth factor-inducible nuclear protein N10; HMR; hormone receptor; immediate early gene transcription factor ngfi-b; MGC9485; N10; NAK-1; nerve growth factor IB nuclear receptor variant 1; NGFIB; NP10; nuclear hormone receptor NUR/77; nuclear receptor subfamily 4, group A, member 1; nuclear receptor subfamily 4immunitygroup A member 1; NUR77; orphan nuclear receptor HMR; orphan nuclear receptor TR3; ST-59; steroid receptor TR3; testicular receptor 3; TR3; TR3 orphan receptor
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,022,832 - 52,059,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,022,832 - 52,059,507 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,416,616 - 52,453,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,731,458 - 50,739,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 341250,723,762 - 50,736,019NCBI
Celera1251,247,867 - 51,255,961 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,449,770 - 49,486,519 (+)NCBIHuRef
CHM1_11252,382,884 - 52,419,560 (+)NCBICHM1_1
T2T-CHM13v2.01251,986,402 - 52,023,082 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
(R)-pantothenic acid  (ISO)
(S)-amphetamine  (ISO)
(S)-nicotine  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,2,4-trimethylbenzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (EXP)
2-methoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,5-dichloro-N-[[(2S)-1-ethyl-2-pyrrolidinyl]methyl]-2-hydroxy-6-methoxybenzamide  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-methylcholanthrene  (ISO)
3-Nitrobenzanthrone  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4,5,6,7-TETRABROMOBENZOTRIAZOLE  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-azacytidine  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
8-Br-cAMP  (EXP,ISO)
8-OH-DPAT  (ISO)
acetaldehyde  (EXP)
acetamide  (ISO)
acrolein  (EXP)
acrylamide  (EXP,ISO)
afimoxifene  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (EXP)
all-trans-retinoic acid  (EXP)
alpha-amanitin  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
aristolochic acid A  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
ATP  (ISO)
atrazine  (EXP)
bellidifolin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol F  (ISO)
bucladesine  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (EXP)
C.I. Natural Red 20  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (EXP)
Calcimycin  (ISO)
calcitriol  (EXP)
camptothecin  (EXP)
cantharidin  (ISO)
capecitabine  (EXP)
carbachol  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
Chorionic gonadotropin  (ISO)
cisplatin  (EXP,ISO)
clozapine  (ISO)
cocaine  (ISO)
colforsin daropate hydrochloride  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
crocidolite asbestos  (EXP)
CU-O LINKAGE  (EXP)
Cuprizon  (ISO)
cycloheximide  (ISO)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (EXP)
cypermethrin  (ISO)
D-glucopyranose 6-phosphate  (ISO)
D-penicillamine  (ISO)
daidzein  (EXP)
daidzein 7-O-beta-D-glucoside  (EXP)
dapsone  (EXP)
DDE  (EXP)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (EXP)
diarsenic trioxide  (EXP)
Dibutyl phosphate  (EXP)
dibutyl phthalate  (ISO)
dichlorine  (ISO)
dicrotophos  (EXP)
dieldrin  (EXP)
diethyl hydrogen phosphate  (EXP,ISO)
dimethylselenide  (EXP)
dinophysistoxin 1  (EXP)
dipentyl phthalate  (ISO)
doxorubicin  (EXP,ISO)
doxycycline  (EXP)
endosulfan  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
febuxostat  (EXP)
fenofibrate  (EXP)
fenthion  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
FR900359  (EXP)
fulvestrant  (EXP)
furan  (ISO)
genistein  (EXP)
genistein 7-O-beta-D-glucoside  (EXP)
gentamycin  (ISO)
glutathione  (EXP)
glycerol  (ISO)
glycidol  (ISO)
glycitein  (EXP)
glycitin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (EXP)
Ibotenic acid  (ISO)
indole-3-methanol  (ISO)
indometacin  (EXP)
inulin  (ISO)
isoprenaline  (ISO)
kainic acid  (ISO)
kenpaullone  (ISO)
ketorolac  (ISO)
lead diacetate  (ISO)
leflunomide  (EXP)
leptomycin B  (EXP)
linsidomine  (ISO)
lipopolysaccharide  (EXP,ISO)
malathion  (EXP)
mancozeb  (ISO)
maneb  (ISO)
menadione  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
methylisothiazolinone  (EXP)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
morphine  (ISO)
Muraglitazar  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP,ISO)
N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclohexanecarboxamide  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (EXP)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
naphthalenes  (ISO)
nickel atom  (ISO)
nickel sulfate  (EXP)
niclosamide  (EXP)
nicotinamide  (ISO)
nicotine  (ISO)
nitric oxide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
paricalcitol  (EXP)
pentetrazol  (ISO)
pentobarbital  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenformin  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
phosphorus atom  (EXP)
phosphorus(.)  (EXP)
pinostrobin  (EXP)
pioglitazone  (ISO)
potassium atom  (ISO)
potassium chloride  (EXP)
potassium chromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
proanthocyanidin  (EXP)
progesterone  (EXP,ISO)
pyridaben  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (EXP)
raloxifene  (EXP)
ranitidine  (ISO)
reactive oxygen species  (EXP)
Rebamipide  (ISO)
rotenone  (ISO)
ryanodine  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
SB 203580  (ISO)
scopolamine  (ISO)
sevoflurane  (ISO)
Shikonin  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium hypochlorite  (EXP)
Soman  (ISO)
styrene  (ISO)
succinic acid  (ISO)
sulforaphane  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
terbufos  (EXP)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
thalidomide  (EXP)
thimerosal  (EXP)
thioacetamide  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
torcetrapib  (EXP)
triazolam  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (EXP,ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triphenyl phosphate  (EXP)
triphenylstannane  (ISO)
tris(2-butoxyethyl) phosphate  (EXP)
troglitazone  (ISO)
trovafloxacin  (ISO)
undecane  (ISO)
urethane  (EXP)
vinclozolin  (ISO)
zearalenone  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA,ISA,ISO,ISS)
cytoplasm  (IEA)
cytosol  (IDA,IEA)
mitochondrion  (IDA,IEA)
nuclear membrane  (IDA)
nucleoplasm  (IDA,IEA,TAS)
nucleus  (IBA,IDA,IEA,ISS)
presynapse  (IEA)
transcription regulator complex  (IBA,IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Orphan nuclear receptor Nur77 promotes acute kidney injury and renal epithelial apoptosis. Balasubramanian S, etal., J Am Soc Nephrol. 2012 Apr;23(4):674-86. doi: 10.1681/ASN.2011070646. Epub 2012 Feb 16.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Genetic disruption of the nuclear receptor Nur77 (Nr4a1) in rat reduces dopamine cell loss and l-Dopa-induced dyskinesia in experimental Parkinson's disease. Rouillard C, etal., Exp Neurol. 2018 Jun;304:143-153. doi: 10.1016/j.expneurol.2018.03.008. Epub 2018 Mar 9.
6. Genetic susceptibility and loss of Nr4a1 enhances macrophage-mediated renal injury in CKD. Westbrook L, etal., J Am Soc Nephrol. 2014 Nov;25(11):2499-510. doi: 10.1681/ASN.2013070786. Epub 2014 Apr 10.
7. Gene expression profile and overexpression of apoptosis-related genes (NGFI-B and Gadd 45 gamma) in early phase of Thy-1 nephritis model. Xu JH, etal., Cell Tissue Res. 2006 Oct;326(1):159-68. doi: 10.1007/s00441-006-0214-4. Epub 2006 May 31.
Additional References at PubMed
PMID:1651101   PMID:2283997   PMID:2555161   PMID:2626032   PMID:7705655   PMID:7890657   PMID:8121493   PMID:8227042   PMID:9315652   PMID:10777386   PMID:10947977   PMID:11274386  
PMID:11559707   PMID:11700033   PMID:11877444   PMID:11883936   PMID:11983153   PMID:12032831   PMID:12046067   PMID:12082103   PMID:12153396   PMID:12376465   PMID:12477932   PMID:12506026  
PMID:12842839   PMID:12947120   PMID:14500374   PMID:14525795   PMID:14592536   PMID:14612408   PMID:14678255   PMID:14702039   PMID:14729605   PMID:14751250   PMID:14769794   PMID:14980220  
PMID:15033715   PMID:15159280   PMID:15208301   PMID:15292355   PMID:15385570   PMID:15459248   PMID:15466594   PMID:15486232   PMID:15489334   PMID:15494375   PMID:15498889   PMID:15509776  
PMID:15591535   PMID:15625237   PMID:15871945   PMID:15964844   PMID:16002533   PMID:16082387   PMID:16169070   PMID:16223362   PMID:16237153   PMID:16264271   PMID:16434970   PMID:16467267  
PMID:16480977   PMID:16713569   PMID:16723716   PMID:16847753   PMID:16873729   PMID:16904076   PMID:17023523   PMID:17139261   PMID:17297306   PMID:17434920   PMID:17515897   PMID:17543277  
PMID:17543302   PMID:17709892   PMID:17761950   PMID:18059339   PMID:18073527   PMID:18079734   PMID:18202854   PMID:18248459   PMID:18292087   PMID:18305400   PMID:18305892   PMID:18654987  
PMID:18690216   PMID:18713840   PMID:18835031   PMID:18985028   PMID:19095693   PMID:19148494   PMID:19213954   PMID:19274049   PMID:19321449   PMID:19675165   PMID:19751824   PMID:19789410  
PMID:20010315   PMID:20023005   PMID:20059973   PMID:20083153   PMID:20195357   PMID:20217038   PMID:20411565   PMID:20438716   PMID:20525362   PMID:20558821   PMID:20642837   PMID:20659174  
PMID:20668010   PMID:20677014   PMID:20809206   PMID:20847229   PMID:21146499   PMID:21480782   PMID:21621845   PMID:21659476   PMID:21726557   PMID:21752397   PMID:21873635   PMID:21900206  
PMID:21986938   PMID:21988832   PMID:22049082   PMID:22081070   PMID:22143616   PMID:22159226   PMID:22301783   PMID:22427340   PMID:22470048   PMID:22551568   PMID:22628435   PMID:22761572  
PMID:22761936   PMID:22789442   PMID:22983157   PMID:23043761   PMID:23071566   PMID:23088713   PMID:23247046   PMID:23315169   PMID:23416839   PMID:23660295   PMID:23720056   PMID:23831020  
PMID:23836374   PMID:23873636   PMID:24005216   PMID:24060638   PMID:24075454   PMID:24139859   PMID:24299210   PMID:24423919   PMID:24515801   PMID:24531914   PMID:24553175   PMID:24584437  
PMID:24744301   PMID:25064356   PMID:25089663   PMID:25092869   PMID:25199433   PMID:25232032   PMID:25241761   PMID:25269081   PMID:25284689   PMID:25326539   PMID:25330024   PMID:25410408  
PMID:25416956   PMID:25511694   PMID:25613138   PMID:25640309   PMID:25809189   PMID:25910212   PMID:25917081   PMID:26035713   PMID:26148973   PMID:26155943   PMID:26229035   PMID:26241646  
PMID:26270486   PMID:26359353   PMID:26392314   PMID:26396259   PMID:26440050   PMID:26556724   PMID:26564988   PMID:26634653   PMID:26673895   PMID:26707825   PMID:26768365   PMID:26840408  
PMID:26929200   PMID:26938745   PMID:26946093   PMID:27025408   PMID:27129202   PMID:27144436   PMID:27159982   PMID:27322146   PMID:27515096   PMID:27617863   PMID:27670690   PMID:27765761  
PMID:27864345   PMID:27871853   PMID:27876882   PMID:27940659   PMID:28240261   PMID:28249906   PMID:28342843   PMID:28359310   PMID:28388439   PMID:28418095   PMID:28431397   PMID:28473536  
PMID:28514442   PMID:28538176   PMID:28622293   PMID:28754437   PMID:28808448   PMID:28838387   PMID:28986522   PMID:29167454   PMID:29395065   PMID:29669342   PMID:30106181   PMID:30123220  
PMID:30224829   PMID:30248546   PMID:30252536   PMID:30266952   PMID:30391133   PMID:30414411   PMID:30804502   PMID:30806032   PMID:30814732   PMID:30905540   PMID:30926635   PMID:30930165  
PMID:30973961   PMID:31050196   PMID:31146003   PMID:31273046   PMID:31312859   PMID:31462501   PMID:31515488   PMID:31574241   PMID:31673088   PMID:31813231   PMID:31822342   PMID:31959898  
PMID:32071334   PMID:32210435   PMID:32393512   PMID:32542822   PMID:32862196   PMID:33086070   PMID:33087562   PMID:33340492   PMID:33537093   PMID:33674745   PMID:33762571   PMID:33798945  
PMID:33961781   PMID:33971110   PMID:33990575   PMID:34096590   PMID:34209871   PMID:34288735   PMID:34437889   PMID:34452975   PMID:34551394   PMID:34624217   PMID:34645818   PMID:34648844  
PMID:34667150   PMID:34699643   PMID:34767155   PMID:35387841   PMID:35577178   PMID:35757735   PMID:35831280   PMID:35902547   PMID:36210716   PMID:36420610   PMID:36422840   PMID:36482877  
PMID:36497127   PMID:36623453   PMID:36770929   PMID:36770940   PMID:37128789   PMID:37161357   PMID:37175855   PMID:37222456   PMID:37539861   PMID:37616343   PMID:37890573   PMID:37922205  
PMID:37961948   PMID:38229336   PMID:38301909   PMID:38310251   PMID:38605605   PMID:38791553  


Genomics

Comparative Map Data
NR4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,022,832 - 52,059,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,022,832 - 52,059,507 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,416,616 - 52,453,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,731,458 - 50,739,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 341250,723,762 - 50,736,019NCBI
Celera1251,247,867 - 51,255,961 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,449,770 - 49,486,519 (+)NCBIHuRef
CHM1_11252,382,884 - 52,419,560 (+)NCBICHM1_1
T2T-CHM13v2.01251,986,402 - 52,023,082 (+)NCBIT2T-CHM13v2.0
Nr4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,151,783 - 101,172,676 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,152,150 - 101,172,676 (+)EnsemblGRCm39 Ensembl
GRCm3815101,253,902 - 101,274,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,254,269 - 101,274,795 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,097,277 - 101,105,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,094,896 - 101,102,826 (+)NCBIMGSCv36mm8
Celera15103,414,983 - 103,422,853 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.64NCBI
Nr4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,247,153 - 134,268,044 (+)NCBIGRCr8
mRatBN7.27132,368,399 - 132,389,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,374,840 - 132,389,297 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,182,933 - 134,190,833 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,412,449 - 136,420,349 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,322,869 - 136,330,773 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,899,358 - 142,920,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,905,758 - 142,920,216 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,700,242 - 140,721,073 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,012,807 - 140,020,590 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,089,243 - 140,097,024 (+)NCBI
Celera7128,846,928 - 128,854,640 (+)NCBICelera
Cytogenetic Map7q36NCBI
Nr4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,404,532 - 2,431,050 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,404,532 - 2,426,882 (+)NCBIChiLan1.0ChiLan1.0
NR4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21042,136,340 - 42,158,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11242,133,103 - 42,154,924 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,703,903 - 36,740,211 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,480,300 - 37,498,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,480,300 - 37,501,188 (-)Ensemblpanpan1.1panPan2
NR4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,947,729 - 2,965,045 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,891,053 - 2,955,655 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,300,499 - 43,308,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,944,790 - 2,966,939 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,939,797 - 2,965,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,961,332 - 2,969,256 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,947,820 - 2,955,733 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,698,715 - 43,706,655 (+)NCBIUU_Cfam_GSD_1.0
Nr4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,656,496 - 63,678,740 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,499,754 - 9,508,423 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,486,096 - 9,508,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,208,354 - 48,232,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,208,587 - 48,233,063 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,859,302 - 197,884,070 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816267,303 - 293,227 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816271,345 - 288,265 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NR4A1
27 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q13.12-13.13(chr12:50633888-52851909)x1 copy number loss See cases [RCV000140716] Chr12:50633888..52851909 [GRCh38]
Chr12:51027671..53245693 [GRCh37]
Chr12:49313938..51531960 [NCBI36]
Chr12:12q13.12-13.13
pathogenic
GRCh38/hg38 12q13.12-13.13(chr12:50122359-53248460)x1 copy number loss See cases [RCV000142033] Chr12:50122359..53248460 [GRCh38]
Chr12:50516142..53642244 [GRCh37]
Chr12:48802409..51928511 [NCBI36]
Chr12:12q13.12-13.13
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_173157.3(NR4A1):c.1199C>T (p.Ala400Val) single nucleotide variant not specified [RCV004284611] Chr12:52057097 [GRCh38]
Chr12:52450881 [GRCh37]
Chr12:12q13.13
uncertain significance
NC_000012.11:g.26370251_54361538inv inversion not specified [RCV000714265] Chr12:26370251..54361538 [GRCh37]
Chr12:12p12.1-q13.13
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_173157.3(NR4A1):c.120C>T (p.Pro40=) single nucleotide variant not provided [RCV000915831] Chr12:52054448 [GRCh38]
Chr12:52448232 [GRCh37]
Chr12:12q13.13
benign
NM_173157.3(NR4A1):c.877-7C>A single nucleotide variant not provided [RCV000924388] Chr12:52056023 [GRCh38]
Chr12:52449807 [GRCh37]
Chr12:12q13.13
likely benign
NM_173157.3(NR4A1):c.237C>A (p.Ser79=) single nucleotide variant not provided [RCV000927793] Chr12:52054565 [GRCh38]
Chr12:52448349 [GRCh37]
Chr12:12q13.13
likely benign
NM_173157.3(NR4A1):c.771C>T (p.Ser257=) single nucleotide variant not provided [RCV000918530] Chr12:52055099 [GRCh38]
Chr12:52448883 [GRCh37]
Chr12:12q13.13
likely benign
NM_173157.3(NR4A1):c.588C>T (p.Thr196=) single nucleotide variant not provided [RCV000970248] Chr12:52054916 [GRCh38]
Chr12:52448700 [GRCh37]
Chr12:12q13.13
benign
NM_173157.3(NR4A1):c.1221C>T (p.Tyr407=) single nucleotide variant not provided [RCV000915654] Chr12:52057119 [GRCh38]
Chr12:52450903 [GRCh37]
Chr12:12q13.13
likely benign
NM_173157.3(NR4A1):c.954C>T (p.Arg318=) single nucleotide variant not provided [RCV000910071] Chr12:52056107 [GRCh38]
Chr12:52449891 [GRCh37]
Chr12:12q13.13
likely benign
NM_173157.3(NR4A1):c.877-7C>T single nucleotide variant not provided [RCV000960935] Chr12:52056023 [GRCh38]
Chr12:52449807 [GRCh37]
Chr12:12q13.13
benign
NM_173157.3(NR4A1):c.1253G>A (p.Arg418His) single nucleotide variant not provided [RCV000959087] Chr12:52057151 [GRCh38]
Chr12:52450935 [GRCh37]
Chr12:12q13.13
benign
NM_173157.3(NR4A1):c.72C>T (p.Asp24=) single nucleotide variant not provided [RCV000913087] Chr12:52054400 [GRCh38]
Chr12:52448184 [GRCh37]
Chr12:12q13.13
benign
NM_173157.3(NR4A1):c.1633G>A (p.Glu545Lys) single nucleotide variant not specified [RCV004085870] Chr12:52058780 [GRCh38]
Chr12:52452564 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1688G>A (p.Arg563Gln) single nucleotide variant not specified [RCV004196667] Chr12:52058835 [GRCh38]
Chr12:52452619 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.487C>T (p.Pro163Ser) single nucleotide variant not specified [RCV004170217] Chr12:52054815 [GRCh38]
Chr12:52448599 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.986C>T (p.Ala329Val) single nucleotide variant not specified [RCV004101555] Chr12:52056139 [GRCh38]
Chr12:52449923 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.904A>G (p.Ile302Val) single nucleotide variant not specified [RCV004090218] Chr12:52056057 [GRCh38]
Chr12:52449841 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.653T>G (p.Leu218Arg) single nucleotide variant not specified [RCV004227854] Chr12:52054981 [GRCh38]
Chr12:52448765 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1389C>G (p.Ile463Met) single nucleotide variant not specified [RCV004209672] Chr12:52057379 [GRCh38]
Chr12:52451163 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.683C>T (p.Thr228Met) single nucleotide variant not specified [RCV004238793] Chr12:52055011 [GRCh38]
Chr12:52448795 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.548C>T (p.Pro183Leu) single nucleotide variant not specified [RCV004096587] Chr12:52054876 [GRCh38]
Chr12:52448660 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1660C>T (p.Arg554Cys) single nucleotide variant not specified [RCV004234883] Chr12:52058807 [GRCh38]
Chr12:52452591 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.113C>T (p.Ala38Val) single nucleotide variant not specified [RCV004225571] Chr12:52054441 [GRCh38]
Chr12:52448225 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1415G>A (p.Arg472Gln) single nucleotide variant not specified [RCV004069556] Chr12:52057405 [GRCh38]
Chr12:52451189 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1655T>C (p.Leu552Pro) single nucleotide variant not specified [RCV004217938] Chr12:52058802 [GRCh38]
Chr12:52452586 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.428C>T (p.Thr143Met) single nucleotide variant not specified [RCV004252495] Chr12:52054756 [GRCh38]
Chr12:52448540 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1307A>G (p.Asp436Gly) single nucleotide variant not specified [RCV004491304] Chr12:52057205 [GRCh38]
Chr12:52450989 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.121G>C (p.Glu41Gln) single nucleotide variant not specified [RCV004491306] Chr12:52054449 [GRCh38]
Chr12:52448233 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1684C>G (p.Leu562Val) single nucleotide variant not specified [RCV004491307] Chr12:52058831 [GRCh38]
Chr12:52452615 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.1429C>T (p.Arg477Cys) single nucleotide variant not specified [RCV004491305] Chr12:52057419 [GRCh38]
Chr12:52451203 [GRCh37]
Chr12:12q13.13
uncertain significance
NM_173157.3(NR4A1):c.251C>T (p.Ser84Leu) single nucleotide variant not specified [RCV004491308] Chr12:52054579 [GRCh38]
Chr12:52448363 [GRCh37]
Chr12:12q13.13
uncertain significance
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR196A1hsa-miR-196a-5pTarbaseexternal_infoSequencingPOSITIVE
MIR196A2hsa-miR-196a-5pTarbaseexternal_infoSequencingPOSITIVE

Predicted Target Of
Summary Value
Count of predictions:6926
Count of miRNA genes:1106
Interacting mature miRNAs:1431
Transcripts:ENST00000243050, ENST00000360284, ENST00000394824, ENST00000394825, ENST00000478250, ENST00000545748, ENST00000546842, ENST00000547206, ENST00000548232, ENST00000548733, ENST00000548977, ENST00000549102, ENST00000550082, ENST00000550339, ENST00000550557, ENST00000550582, ENST00000550763, ENST00000553200, ENST00000562373, ENST00000564201, ENST00000565848, ENST00000567890
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407182340GWAS831316_Hessential tremor QTL GWAS831316 (human)0.000001essential tremor125205402452054025Human
407050257GWAS699233_Htriacylglycerol 56:10 measurement QTL GWAS699233 (human)0.000006blood triglyceride amount (VT:0002644)125205830552058306Human
407416499GWAS1065475_Hdiastolic blood pressure QTL GWAS1065475 (human)8e-09diastolic blood pressurediastolic blood pressure (CMO:0000005)125202429152024292Human
407240042GWAS889018_Hbody height QTL GWAS889018 (human)7e-14body height (VT:0001253)body height (CMO:0000106)125205949852059499Human

Markers in Region
D12S1712  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371252,446,024 - 52,446,215UniSTSGRCh37
Build 361250,732,291 - 50,732,482RGDNCBI36
Celera1251,248,700 - 51,248,889RGD
Cytogenetic Map12q13UniSTS
HuRef1249,479,256 - 49,479,445UniSTS
Marshfield Genetic Map1266.03RGD
Marshfield Genetic Map1266.03UniSTS
Genethon Genetic Map1267.3UniSTS
TNG Radiation Hybrid Map1223922.0UniSTS
Whitehead-YAC Contig Map12 UniSTS
RH80778  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371252,449,137 - 52,449,350UniSTSGRCh37
Build 361250,735,404 - 50,735,617RGDNCBI36
Celera1251,251,811 - 51,252,024RGD
Cytogenetic Map12q13UniSTS
HuRef1249,482,364 - 49,482,577UniSTS
GeneMap99-GB4 RH Map12227.66UniSTS
PMC109903P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371252,448,279 - 52,448,795UniSTSGRCh37
Build 361250,734,546 - 50,735,062RGDNCBI36
Celera1251,250,953 - 51,251,469RGD
Cytogenetic Map12q13UniSTS
HuRef1249,481,506 - 49,482,022UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
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Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4972 1726 2351 6 624 1949 465 2269 7304 6470 52 3733 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001202233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001202234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_002135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005268822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005268824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006719363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006719364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB307717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC025259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL702926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG057763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D49728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D85245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC025814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ692855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000243050   ⟹   ENSP00000243050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,402 - 52,059,506 (+)Ensembl
Ensembl Acc Id: ENST00000360284   ⟹   ENSP00000353427
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,022,832 - 52,059,506 (+)Ensembl
Ensembl Acc Id: ENST00000394824   ⟹   ENSP00000378301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,442 - 52,059,507 (+)Ensembl
Ensembl Acc Id: ENST00000394825   ⟹   ENSP00000378302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,442 - 52,059,503 (+)Ensembl
Ensembl Acc Id: ENST00000478250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,043,727 - 52,055,961 (+)Ensembl
Ensembl Acc Id: ENST00000545748   ⟹   ENSP00000440864
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,037,715 - 52,059,501 (+)Ensembl
Ensembl Acc Id: ENST00000546842   ⟹   ENSP00000457070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,037,177 - 52,055,197 (+)Ensembl
Ensembl Acc Id: ENST00000547206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,043,839 - 52,054,673 (+)Ensembl
Ensembl Acc Id: ENST00000548232   ⟹   ENSP00000449587
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,448 - 52,055,306 (+)Ensembl
Ensembl Acc Id: ENST00000548733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,463 - 52,057,425 (+)Ensembl
Ensembl Acc Id: ENST00000548977   ⟹   ENSP00000456633
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,022,832 - 52,054,646 (+)Ensembl
Ensembl Acc Id: ENST00000549102
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,043,425 - 52,054,439 (+)Ensembl
Ensembl Acc Id: ENST00000550082   ⟹   ENSP00000449539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,041,805 - 52,059,049 (+)Ensembl
Ensembl Acc Id: ENST00000550339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,056,022 - 52,056,855 (+)Ensembl
Ensembl Acc Id: ENST00000550557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,053,418 - 52,059,503 (+)Ensembl
Ensembl Acc Id: ENST00000550582   ⟹   ENSP00000455767
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,056,604 - 52,058,703 (+)Ensembl
Ensembl Acc Id: ENST00000550763   ⟹   ENSP00000449858
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,442 - 52,056,151 (+)Ensembl
Ensembl Acc Id: ENST00000553200   ⟹   ENSP00000456776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,037,242 - 52,045,568 (+)Ensembl
Ensembl Acc Id: ENST00000562373   ⟹   ENSP00000455399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,051,459 - 52,054,882 (+)Ensembl
Ensembl Acc Id: ENST00000564201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,055,721 - 52,056,804 (+)Ensembl
Ensembl Acc Id: ENST00000565848
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,056,689 - 52,057,471 (+)Ensembl
Ensembl Acc Id: ENST00000567890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,056,145 - 52,057,139 (+)Ensembl
RefSeq Acc Id: NM_001202233   ⟹   NP_001189162
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,022,832 - 52,059,503 (+)NCBI
GRCh371252,416,616 - 52,453,291 (+)NCBI
HuRef1249,449,770 - 49,486,519 (+)ENTREZGENE
CHM1_11252,382,884 - 52,419,560 (+)NCBI
T2T-CHM13v2.01251,986,402 - 52,023,082 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001202234   ⟹   NP_001189163
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,037,715 - 52,059,503 (+)NCBI
CHM1_11252,397,768 - 52,419,560 (+)NCBI
T2T-CHM13v2.01252,001,298 - 52,023,082 (+)NCBI
Sequence:
RefSeq Acc Id: NM_002135   ⟹   NP_002126
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,051,442 - 52,059,503 (+)NCBI
GRCh371252,416,616 - 52,453,291 (+)ENTREZGENE
GRCh371252,416,616 - 52,453,291 (+)NCBI
Build 361250,731,458 - 50,739,554 (+)NCBI Archive
HuRef1249,449,770 - 49,486,519 (+)ENTREZGENE
CHM1_11252,411,455 - 52,419,560 (+)NCBI
T2T-CHM13v2.01252,015,025 - 52,023,082 (+)NCBI
Sequence:
RefSeq Acc Id: NM_173157   ⟹   NP_775180
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,051,442 - 52,059,503 (+)NCBI
GRCh371252,416,616 - 52,453,291 (+)ENTREZGENE
GRCh371252,416,616 - 52,453,291 (+)NCBI
Build 361250,731,458 - 50,739,554 (+)NCBI Archive
HuRef1249,449,770 - 49,486,519 (+)ENTREZGENE
CHM1_11252,411,455 - 52,419,560 (+)NCBI
T2T-CHM13v2.01252,015,025 - 52,023,082 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005268822   ⟹   XP_005268879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,037,145 - 52,059,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005268824   ⟹   XP_005268881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,043,713 - 52,059,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017019247   ⟹   XP_016874736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,051,442 - 52,059,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017019248   ⟹   XP_016874737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,038,756 - 52,046,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017019249   ⟹   XP_016874738
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,038,756 - 52,046,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047428755   ⟹   XP_047284711
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,038,756 - 52,059,503 (+)NCBI
RefSeq Acc Id: XM_047428756   ⟹   XP_047284712
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,038,756 - 52,059,503 (+)NCBI
RefSeq Acc Id: XM_047428757   ⟹   XP_047284713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,038,756 - 52,056,529 (+)NCBI
RefSeq Acc Id: XM_054371903   ⟹   XP_054227878
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01252,000,718 - 52,023,082 (+)NCBI
RefSeq Acc Id: XM_054371904   ⟹   XP_054227879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01252,014,985 - 52,023,082 (+)NCBI
RefSeq Acc Id: XM_054371905   ⟹   XP_054227880
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01252,007,297 - 52,023,082 (+)NCBI
RefSeq Acc Id: XM_054371906   ⟹   XP_054227881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01252,001,871 - 52,010,226 (+)NCBI
RefSeq Acc Id: XM_054371907   ⟹   XP_054227882
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01252,001,871 - 52,010,226 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001189162 (Get FASTA)   NCBI Sequence Viewer  
  NP_001189163 (Get FASTA)   NCBI Sequence Viewer  
  NP_002126 (Get FASTA)   NCBI Sequence Viewer  
  NP_775180 (Get FASTA)   NCBI Sequence Viewer  
  XP_005268879 (Get FASTA)   NCBI Sequence Viewer  
  XP_005268881 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874736 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874737 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874738 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284711 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284712 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284713 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227878 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227879 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227880 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227881 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227882 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA36763 (Get FASTA)   NCBI Sequence Viewer  
  AAH16147 (Get FASTA)   NCBI Sequence Viewer  
  AAP35808 (Get FASTA)   NCBI Sequence Viewer  
  ADZ17366 (Get FASTA)   NCBI Sequence Viewer  
  BAA08565 (Get FASTA)   NCBI Sequence Viewer  
  BAA12746 (Get FASTA)   NCBI Sequence Viewer  
  BAD18699 (Get FASTA)   NCBI Sequence Viewer  
  BAG37048 (Get FASTA)   NCBI Sequence Viewer  
  BAG59929 (Get FASTA)   NCBI Sequence Viewer  
  BAH02308 (Get FASTA)   NCBI Sequence Viewer  
  CAD38550 (Get FASTA)   NCBI Sequence Viewer  
  CAG32985 (Get FASTA)   NCBI Sequence Viewer  
  CBH19838 (Get FASTA)   NCBI Sequence Viewer  
  EAW58222 (Get FASTA)   NCBI Sequence Viewer  
  EAW58223 (Get FASTA)   NCBI Sequence Viewer  
  EAW58224 (Get FASTA)   NCBI Sequence Viewer  
  EAW58225 (Get FASTA)   NCBI Sequence Viewer  
  EAW58226 (Get FASTA)   NCBI Sequence Viewer  
  EAW58227 (Get FASTA)   NCBI Sequence Viewer  
  EAW58228 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000243050
  ENSP00000243050.1
  ENSP00000353427
  ENSP00000353427.3
  ENSP00000378301.2
  ENSP00000378302
  ENSP00000378302.1
  ENSP00000440864
  ENSP00000440864.1
  ENSP00000449539.1
  ENSP00000449587.1
  ENSP00000449858.1
  ENSP00000455399.1
  ENSP00000455767.1
  ENSP00000456633.1
  ENSP00000456776.1
  ENSP00000457070.1
GenBank Protein P22736 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001189162   ⟸   NM_001202233
- Peptide Label: isoform 2
- UniProtKB: Q8N3V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_002126   ⟸   NM_002135
- Peptide Label: isoform 1
- UniProtKB: Q53Y00 (UniProtKB/Swiss-Prot),   Q15627 (UniProtKB/Swiss-Prot),   B4DML7 (UniProtKB/Swiss-Prot),   Q6IBU8 (UniProtKB/Swiss-Prot),   P22736 (UniProtKB/Swiss-Prot),   Q8N3V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_775180   ⟸   NM_173157
- Peptide Label: isoform 1
- UniProtKB: Q53Y00 (UniProtKB/Swiss-Prot),   Q15627 (UniProtKB/Swiss-Prot),   B4DML7 (UniProtKB/Swiss-Prot),   Q6IBU8 (UniProtKB/Swiss-Prot),   P22736 (UniProtKB/Swiss-Prot),   Q8N3V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005268879   ⟸   XM_005268822
- Peptide Label: isoform X2
- UniProtKB: Q6ZMM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005268881   ⟸   XM_005268824
- Peptide Label: isoform X5
- UniProtKB: Q53Y00 (UniProtKB/Swiss-Prot),   Q15627 (UniProtKB/Swiss-Prot),   B4DML7 (UniProtKB/Swiss-Prot),   Q6IBU8 (UniProtKB/Swiss-Prot),   P22736 (UniProtKB/Swiss-Prot),   Q8N3V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001189163   ⟸   NM_001202234
- Peptide Label: isoform 3
- UniProtKB: F5GXF0 (UniProtKB/TrEMBL),   Q6ZMM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016874737   ⟸   XM_017019248
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_016874738   ⟸   XM_017019249
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_016874736   ⟸   XM_017019247
- Peptide Label: isoform X4
- UniProtKB: Q8N3V2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000353427   ⟸   ENST00000360284
Ensembl Acc Id: ENSP00000440864   ⟸   ENST00000545748
Ensembl Acc Id: ENSP00000243050   ⟸   ENST00000243050
Ensembl Acc Id: ENSP00000457070   ⟸   ENST00000546842
Ensembl Acc Id: ENSP00000456633   ⟸   ENST00000548977
Ensembl Acc Id: ENSP00000449587   ⟸   ENST00000548232
Ensembl Acc Id: ENSP00000455399   ⟸   ENST00000562373
Ensembl Acc Id: ENSP00000449539   ⟸   ENST00000550082
Ensembl Acc Id: ENSP00000449858   ⟸   ENST00000550763
Ensembl Acc Id: ENSP00000455767   ⟸   ENST00000550582
Ensembl Acc Id: ENSP00000378301   ⟸   ENST00000394824
Ensembl Acc Id: ENSP00000378302   ⟸   ENST00000394825
Ensembl Acc Id: ENSP00000456776   ⟸   ENST00000553200
RefSeq Acc Id: XP_047284711   ⟸   XM_047428755
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047284712   ⟸   XM_047428756
- Peptide Label: isoform X3
- UniProtKB: Q8N3V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047284713   ⟸   XM_047428757
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054227878   ⟸   XM_054371903
- Peptide Label: isoform X2
- UniProtKB: Q6ZMM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054227881   ⟸   XM_054371906
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054227882   ⟸   XM_054371907
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054227880   ⟸   XM_054371905
- Peptide Label: isoform X5
- UniProtKB: Q53Y00 (UniProtKB/Swiss-Prot),   Q15627 (UniProtKB/Swiss-Prot),   P22736 (UniProtKB/Swiss-Prot),   B4DML7 (UniProtKB/Swiss-Prot),   Q6IBU8 (UniProtKB/Swiss-Prot),   Q8N3V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054227879   ⟸   XM_054371904
- Peptide Label: isoform X4
- UniProtKB: Q8N3V2 (UniProtKB/TrEMBL)
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P22736-F1-model_v2 AlphaFold P22736 1-598 view protein structure

Promoters
RGD ID:6790318
Promoter ID:HG_KWN:15681
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000394824,   NM_002135,   NM_173157,   UC009ZMB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361250,730,761 - 50,731,792 (+)MPROMDB
RGD ID:6851866
Promoter ID:EP73739
Type:multiple initiation site
Name:HS_NR4A1
Description:Nuclear receptor subfamily 4, group A, member 1.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 361250,731,493 - 50,731,553EPD
RGD ID:6790319
Promoter ID:HG_KWN:15682
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:ENST00000345935,   ENST00000406048,   UC009ZMC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361250,732,561 - 50,737,297 (+)MPROMDB
RGD ID:7223983
Promoter ID:EPDNEW_H17736
Type:multiple initiation site
Name:NR4A1_2
Description:nuclear receptor subfamily 4 group A member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17737  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,043,713 - 52,043,773EPDNEW
RGD ID:7223981
Promoter ID:EPDNEW_H17737
Type:initiation region
Name:NR4A1_1
Description:nuclear receptor subfamily 4 group A member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17736  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,051,442 - 52,051,502EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:7980 AgrOrtholog
COSMIC NR4A1 COSMIC
Ensembl Genes ENSG00000123358 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000243050 ENTREZGENE
  ENST00000243050.5 UniProtKB/Swiss-Prot
  ENST00000360284 ENTREZGENE
  ENST00000360284.7 UniProtKB/Swiss-Prot
  ENST00000394824.2 UniProtKB/Swiss-Prot
  ENST00000394825 ENTREZGENE
  ENST00000394825.6 UniProtKB/Swiss-Prot
  ENST00000545748 ENTREZGENE
  ENST00000545748.5 UniProtKB/TrEMBL
  ENST00000546842.5 UniProtKB/TrEMBL
  ENST00000548232.1 UniProtKB/Swiss-Prot
  ENST00000548977.5 UniProtKB/TrEMBL
  ENST00000550082.5 UniProtKB/Swiss-Prot
  ENST00000550582.2 UniProtKB/TrEMBL
  ENST00000550763.1 UniProtKB/TrEMBL
  ENST00000553200.1 UniProtKB/TrEMBL
  ENST00000562373.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000123358 GTEx
HGNC ID HGNC:7980 ENTREZGENE
Human Proteome Map NR4A1 Human Proteome Map
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_orp_HMR_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_orph_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3164 UniProtKB/Swiss-Prot
NCBI Gene 3164 ENTREZGENE
OMIM 139139 OMIM
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA31761 PharmGKB
PRINTS HMRNUCRECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEARECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DML7 ENTREZGENE
  F5GXF0 ENTREZGENE, UniProtKB/TrEMBL
  F8VVX9_HUMAN UniProtKB/TrEMBL
  H3BPN8_HUMAN UniProtKB/TrEMBL
  H3BQG5_HUMAN UniProtKB/TrEMBL
  H3BSB9_HUMAN UniProtKB/TrEMBL
  H3BSM8_HUMAN UniProtKB/TrEMBL
  H3BT85_HUMAN UniProtKB/TrEMBL
  NR4A1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q15627 ENTREZGENE
  Q53Y00 ENTREZGENE
  Q6IBU8 ENTREZGENE
  Q6ZMM6 ENTREZGENE, UniProtKB/TrEMBL
  Q8N3V2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B4DML7 UniProtKB/Swiss-Prot
  Q15627 UniProtKB/Swiss-Prot
  Q53Y00 UniProtKB/Swiss-Prot
  Q6IBU8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 NR4A1  nuclear receptor subfamily 4 group A member 1  NR4A1  nuclear receptor subfamily 4, group A, member 1  Symbol and/or name change 5135510 APPROVED