Apoa2 (apolipoprotein A-II) - Rat Genome Database

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Gene: Apoa2 (apolipoprotein A-II) Mus musculus
Analyze
Symbol: Apoa2
Name: apolipoprotein A-II
RGD ID: 732677
MGI Page MGI
Description: Exhibits high-density lipoprotein particle binding activity. Is predicted to contribute to cholesterol transfer activity. Involved in several processes, including cholesterol homeostasis; negative regulation of lipase activity; and regulation of intestinal cholesterol absorption. Localizes to extracellular space. Is expressed in alimentary system; embryo; liver; and liver lobe. Human ortholog(s) of this gene implicated in familial hypercholesterolemia. Orthologous to human APOA2 (apolipoprotein A2).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: A; Al; Alp-2; Ap; apo-AII; Apoa-2; ApoA-II; ApoAII; apolipoprotein A2; Hdl-; Hdl-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,049,133 - 171,053,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,052,623 - 171,053,948 (+)Ensembl
GRCm381171,221,564 - 171,226,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,225,054 - 171,226,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,155,185 - 173,156,510 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,061,764 - 173,063,045 (+)NCBImm8
Celera1173,673,195 - 173,674,520 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-ephedrine  (ISO)
1,1-dichloroethene  (EXP)
1-nitropropane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2,6-diaminotoluene  (ISO)
2-acetamidofluorene  (ISO)
2-nitro-p-phenylenediamine  (ISO)
2-nitropropane  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-acetylaminofluorene  (ISO)
4-nitro-1,2-phenylenediamine  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
atenolol  (ISO)
benzalkonium chloride  (EXP)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bezafibrate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
buta-1,3-diene  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
cerium trichloride  (EXP)
chlorohydrocarbon  (ISO)
clofibric acid  (ISO)
Clofop  (ISO)
clonidine  (ISO)
clonidine (amino form)  (ISO)
clonidine (imino form)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyproterone acetate  (ISO)
dorsomorphin  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
glafenine  (ISO)
graphene oxide  (EXP)
graphite  (ISO)
hydrazine  (ISO)
isoprenaline  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
manganese(II) chloride  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nifedipine  (ISO)
obeticholic acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
pentetic acid  (ISO)
perflubutane  (ISO)
perfluorodecanoic acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluoroheptanoic acid  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorohexanoic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
perfluoroundecanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
SB 431542  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP,ISO)
Tesaglitazar  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tremolite asbestos  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute inflammatory response  (ISO)
animal organ regeneration  (ISO)
cholesterol efflux  (ISO)
cholesterol homeostasis  (IBA,IDA,IGI,IMP,ISO)
cholesterol metabolic process  (IBA,IGI,IMP)
cholesterol transport  (IBA,ISO)
diacylglycerol catabolic process  (ISO)
high-density lipoprotein particle assembly  (IBA,ISO)
high-density lipoprotein particle clearance  (ISO)
high-density lipoprotein particle remodeling  (IBA,ISO)
lipid transport  (IMP)
lipoprotein metabolic process  (IBA,IDA)
low-density lipoprotein particle remodeling  (IBA,ISO)
negative regulation of cholesterol import  (ISO)
negative regulation of cholesterol transport  (ISO)
negative regulation of cholesterol transporter activity  (ISO)
negative regulation of cytokine production involved in immune response  (ISO)
negative regulation of lipase activity  (IBA,IMP,ISO)
negative regulation of lipid catabolic process  (ISO)
negative regulation of very-low-density lipoprotein particle remodeling  (ISO)
peptidyl-methionine modification  (ISO)
phosphatidylcholine biosynthetic process  (ISO)
phospholipid catabolic process  (ISO)
phospholipid efflux  (ISO)
positive regulation of cholesterol esterification  (ISO)
positive regulation of interleukin-8 production  (ISO)
positive regulation of lipid catabolic process  (ISO)
positive regulation of phagocytosis  (ISO)
protein oxidation  (ISO)
protein stabilization  (ISO)
regulation of intestinal cholesterol absorption  (IMP)
regulation of protein stability  (ISO)
response to drug  (ISO)
response to estrogen  (ISO)
response to glucocorticoid  (ISO)
response to glucose  (ISO)
reverse cholesterol transport  (ISO)
triglyceride-rich lipoprotein particle remodeling  (IBA,ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1301170   PMID:1352323   PMID:1478650   PMID:1596514   PMID:1683229   PMID:1693656   PMID:1971301   PMID:2004776   PMID:2118905   PMID:2426658   PMID:2474894   PMID:2499515  
PMID:2514123   PMID:2564419   PMID:2574151   PMID:2787796   PMID:2842249   PMID:2885153   PMID:2894402   PMID:3089836   PMID:3095143   PMID:3128974   PMID:3136074   PMID:3148667  
PMID:3384439   PMID:3416634   PMID:3450276   PMID:3473481   PMID:4054960   PMID:6403543   PMID:7560076   PMID:7592824   PMID:7607671   PMID:7748156   PMID:7797269   PMID:7829095  
PMID:7837794   PMID:8043949   PMID:8075499   PMID:8176896   PMID:8248186   PMID:8381093   PMID:8422330   PMID:8563167   PMID:8642256   PMID:8647961   PMID:8682656   PMID:8798380  
PMID:8827514   PMID:8889548   PMID:8962133   PMID:9077551   PMID:9150245   PMID:9186920   PMID:9218525   PMID:9250876   PMID:9422770   PMID:9651528   PMID:9933565   PMID:10049364  
PMID:10051400   PMID:10349636   PMID:10357838   PMID:10520743   PMID:10866673   PMID:10995040   PMID:11002334   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11371557   PMID:11714850  
PMID:11818366   PMID:11971944   PMID:11973313   PMID:12114523   PMID:12231556   PMID:12466851   PMID:12477932   PMID:12562830   PMID:12805272   PMID:12819125   PMID:14592847   PMID:14610273  
PMID:14681479   PMID:14701919   PMID:14729860   PMID:14872007   PMID:14986479   PMID:14993241   PMID:15063745   PMID:15111306   PMID:15310659   PMID:15489334   PMID:15524312   PMID:15760467  
PMID:15922294   PMID:15997185   PMID:16141072   PMID:16141073   PMID:16254318   PMID:16387874   PMID:16498401   PMID:16507905   PMID:16595606   PMID:16832355   PMID:16877778   PMID:17110338  
PMID:17468778   PMID:17485926   PMID:17652309   PMID:17722986   PMID:17916774   PMID:18160395   PMID:18245842   PMID:18554416   PMID:19106236   PMID:19596087   PMID:21267068   PMID:21300819  
PMID:21622630   PMID:21677750   PMID:21756353   PMID:21873635   PMID:24520415   PMID:25545477   PMID:25675489   PMID:26238476   PMID:26446156   PMID:27756649   PMID:29618729   PMID:30104731  
PMID:32325033  


Genomics

Comparative Map Data
Apoa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,049,133 - 171,053,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,052,623 - 171,053,948 (+)Ensembl
GRCm381171,221,564 - 171,226,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,225,054 - 171,226,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,155,185 - 173,156,510 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,061,764 - 173,063,045 (+)NCBImm8
Celera1173,673,195 - 173,674,520 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.22NCBI
APOA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,222,292 - 161,223,631 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,222,292 - 161,223,628 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,192,082 - 161,193,418 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,458,707 - 159,460,042 (-)NCBINCBI36hg18NCBI36
Build 341158,005,155 - 158,006,491NCBI
Celera1134,259,238 - 134,260,561 (-)NCBI
Cytogenetic Map1q23.3NCBI
HuRef1132,549,030 - 132,550,353 (-)NCBIHuRef
CHM1_11162,588,335 - 162,589,660 (-)NCBICHM1_1
Apoa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21383,644,460 - 83,646,358 (+)NCBI
Rnor_6.0 Ensembl1389,597,138 - 89,598,802 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01389,596,872 - 89,598,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01394,223,741 - 94,225,670 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,114,734 - 87,116,372 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11387,303,617 - 87,305,256 (+)NCBI
Celera1383,275,901 - 83,277,538 (+)NCBICelera
Cytogenetic Map13q24NCBI
Apoa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,977,956 - 12,979,753 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,977,956 - 12,979,282 (-)NCBIChiLan1.0ChiLan1.0
APOA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11140,546,591 - 140,547,959 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,546,591 - 140,547,959 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01136,634,754 - 136,636,122 (-)NCBIMhudiblu_PPA_v0panPan3
APOA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,263,641 - 21,265,887 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,262,789 - 21,265,887 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,338,500 - 21,340,743 (+)NCBI
ROS_Cfam_1.03821,381,461 - 21,383,727 (+)NCBI
UMICH_Zoey_3.13821,278,560 - 21,279,234 (+)NCBI
UNSW_CanFamBas_1.03821,683,795 - 21,686,027 (+)NCBI
UU_Cfam_GSD_1.03822,092,910 - 22,095,161 (+)NCBI
Apoa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,311,984 - 7,313,278 (-)NCBI
SpeTri2.0NW_004936903520,420 - 521,726 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,237,511 - 89,240,320 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,237,514 - 89,239,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,094,196 - 97,095,808 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOA2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,757,939 - 2,760,356 (+)NCBI
ChlSab1.1 Ensembl202,759,237 - 2,760,686 (+)Ensembl
Apoa2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794164,351 - 165,676 (+)NCBI

Position Markers
PMC316377P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,225,309 - 171,226,207UniSTSGRCm38
MGSCv371173,155,440 - 173,156,338UniSTSGRCm37
Celera1173,673,450 - 173,674,348UniSTS
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
Apoa2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,225,423 - 171,226,367UniSTSGRCm38
MGSCv371173,155,554 - 173,156,498UniSTSGRCm37
Celera1173,673,564 - 173,674,508UniSTS
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
cM Map192.6UniSTS
cM Map192.6UniSTS
Apoa2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
Apoa2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,226,216 - 171,226,360UniSTSGRCm38
MGSCv371173,156,347 - 173,156,491UniSTSGRCm37
Celera1173,674,357 - 173,674,501UniSTS
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139774467173774646Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141405603175405702Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145317638179317756Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156774467189571420Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141405603175405702Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139774467173774646Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162317638194429220Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143457095177457233Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167730317195471971Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167730317195471971Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1168222387195471971Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139774467173774646Mouse
1302037Nktcn1_mnatural killer T cell numbers 1 (mouse)Not determined1168358674171804689Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159435007193435127Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9148047933182048047Mouse
1300837Vmbic1_mventral midbrain iron content 1 (mouse)Not determined1139624618173624738Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158641251192641372Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139774467173774646Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164315658190802075Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139774467173774646Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167730317195471971Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141405603175405702Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
1302201Alcw1_malcohol withdrawal 1 (mouse)Not determined1171040785172138790Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144703778178704023Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139774467173774646Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139774467173774646Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1171051174174628870Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147249520183092234Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167929168189571420Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1166092111195471971Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158641251192641372Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169211172177550021Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168481626195471971Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170647303195471971Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156774467189571420Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142661973176662164Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139624618173624738Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1163149528186261999Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160285202194285317Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153681660175641372Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1148047933182048047Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158641251192641372Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169211172174628870Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined171051174175492500Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141267440175267586Mouse
4142065Bmd5b_mbone mineral density 5b (mouse)Not determined169007542171938066Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158641251192641372Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158641251192641372Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147391821181391821Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145250061179250061Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147249520171804689Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160269591194269591Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160269591194269591Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169310000179820000Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167758517191493284Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139774467173774646Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147391821181391821Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156774467176435127Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141405603175405702Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144621573178621573Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158641251192641372Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1042
Count of miRNA genes:305
Interacting mature miRNAs:321
Transcripts:ENSMUST00000005824, ENSMUST00000111319, ENSMUST00000111320, ENSMUST00000111321
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001305550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001305585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_131173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA060885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU609941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY780589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB947382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU007908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M79361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M79362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S79794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U05691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X62772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000005824   ⟹   ENSMUSP00000005824
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,225,082 - 171,226,378 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111319   ⟹   ENSMUSP00000106951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,225,091 - 171,226,337 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111320   ⟹   ENSMUSP00000106952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,225,084 - 171,226,373 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111321   ⟹   ENSMUSP00000106953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,225,054 - 171,226,379 (+)Ensembl
RefSeq Acc Id: NM_001305549   ⟹   NP_001292478
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,052,623 - 171,053,948 (+)NCBI
GRCm381171,225,054 - 171,226,379 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001305550   ⟹   NP_001292479
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,052,623 - 171,053,948 (+)NCBI
GRCm381171,225,054 - 171,226,379 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001305585   ⟹   NP_001292514
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,049,133 - 171,053,948 (+)NCBI
GRCm381171,221,564 - 171,226,379 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013474   ⟹   NP_038502
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,052,623 - 171,053,948 (+)NCBI
GRCm381171,225,054 - 171,226,379 (+)NCBI
MGSCv371173,155,185 - 173,156,510 (+)RGD
Celera1173,673,195 - 173,674,520 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_131173
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,052,623 - 171,053,948 (+)NCBI
GRCm381171,225,054 - 171,226,379 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038502   ⟸   NM_013474
- Peptide Label: preproprotein
- UniProtKB: P09813 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001292514   ⟸   NM_001305585
- Peptide Label: preproprotein
- UniProtKB: P09813 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001292478   ⟸   NM_001305549
- Peptide Label: preproprotein
- UniProtKB: P09813 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001292479   ⟸   NM_001305550
- Peptide Label: preproprotein
- UniProtKB: P09813 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000106951   ⟸   ENSMUST00000111319
RefSeq Acc Id: ENSMUSP00000106952   ⟸   ENSMUST00000111320
RefSeq Acc Id: ENSMUSP00000106953   ⟸   ENSMUST00000111321
RefSeq Acc Id: ENSMUSP00000005824   ⟸   ENSMUST00000005824

Promoters
RGD ID:6875660
Promoter ID:EPDNEW_M1281
Type:multiple initiation site
Name:Apoa2_1
Description:Mus musculus apolipoprotein A-II , transcript variant 5, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381171,225,092 - 171,225,152EPDNEW
RGD ID:6817363
Promoter ID:MM_KWN:2831
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver
Transcripts:ENSMUST00000111319,   ENSMUST00000111320,   ENSMUST00000111321,   NM_013474
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361173,155,151 - 173,155,651 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88050 AgrOrtholog
Ensembl Genes ENSMUSG00000005681 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000005824 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106951 UniProtKB/Swiss-Prot
  ENSMUSP00000106952 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106953 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000005824 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111319 UniProtKB/Swiss-Prot
  ENSMUST00000111320 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111321 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro ApoA-II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ApoA-II_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11807 UniProtKB/Swiss-Prot
MGD MGI:88050 ENTREZGENE
NCBI Gene 11807 ENTREZGENE
PANTHER PTHR11027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ApoA-II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Apoa2 PhenoGen
Superfamily-SCOP SSF82936 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A7YL62_MOUSE UniProtKB/TrEMBL
  APOA2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6LD55_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UKX6 UniProtKB/Swiss-Prot
  Q61317 UniProtKB/Swiss-Prot