Vdac1 (voltage-dependent anion channel 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Vdac1 (voltage-dependent anion channel 1) Mus musculus
Analyze
Symbol: Vdac1
Name: voltage-dependent anion channel 1
RGD ID: 732558
MGI Page MGI
Description: Enables oxysterol binding activity and voltage-gated monoatomic anion channel activity. Involved in negative regulation of reactive oxygen species metabolic process and regulation of mitophagy. Acts upstream of or within behavioral fear response; learning; and neuron-neuron synaptic transmission. Located in membrane and mitochondrion. Is expressed in several structures, including central nervous system; eye; liver; placenta; and testis. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human VDAC1 (voltage dependent anion channel 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL033343; mVDAC1; mVDAC5; outer mitochondrial membrane protein porin 1; plasmalemmal porin; Vda; VDAC-1; VDAC-5; Vdac5; voltage-dependent anion-selective channel protein 1; voltage-dependent anion-selective channel protein 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm13360   Gm13758   Gm15132   Gm16102   Gm16479   Gm16480   Gm17072   Gm18656   Gm2988   Gm5379   Gm7506   Gm7910   Gm8459  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391152,251,905 - 52,280,224 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1152,251,687 - 52,280,224 (+)EnsemblGRCm39 Ensembl
GRCm381152,360,851 - 52,389,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1152,360,860 - 52,389,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371152,174,617 - 52,202,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361152,204,538 - 52,232,819 (+)NCBIMGSCv36mm8
Celera1156,932,845 - 56,961,186 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(R)-adrenaline  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2,2-tetramine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-nitropropanoic acid  (ISO)
4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
7H-xanthine  (ISO)
9H-xanthine  (ISO)
acetylsalicylic acid  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
ammonium chloride  (ISO)
antimycin A  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (EXP,ISO)
asiatic acid  (ISO)
ATP  (ISO)
azoxystrobin  (ISO)
bafilomycin A1  (EXP)
benzo[a]pyrene  (ISO)
betulinic acid  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Brodifacoum  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcidiol  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
carnosic acid  (ISO)
chloropicrin  (ISO)
chloroprene  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
clozapine  (ISO)
copper(II) chloride  (EXP)
coumestrol  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP)
D-glucose  (EXP)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
disulfiram  (ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
efavirenz  (ISO)
emodin  (ISO)
Erythropoietin  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
flufenoxuron  (EXP)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP)
GW 4064  (EXP)
homocysteine  (ISO)
hydrogen peroxide  (ISO)
hydrogen sulfide  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
josamycin  (ISO)
L-ascorbic acid  (ISO)
L-glutamic acid  (ISO)
L-methionine  (EXP)
lamivudine  (EXP)
lead diacetate  (EXP,ISO)
manganese atom  (EXP)
manganese(0)  (EXP)
melittin  (ISO)
melphalan  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
microcystin-LR  (ISO)
mitoxantrone  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-ethylmaleimide  (ISO)
N-hexadecanoylsphingosine  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
oxidopamine  (ISO)
oxybenzone  (ISO)
p-menthan-3-ol  (ISO)
p-toluidine  (ISO)
paracetamol  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
peroxynitrous acid  (ISO)
phenethyl caffeate  (EXP)
phosphoramide mustard  (ISO)
pirinixic acid  (ISO)
Propiverine  (ISO)
pyrazinecarboxamide  (ISO)
pyrogallol  (EXP)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (EXP,ISO)
rotenone  (ISO)
sarin  (ISO)
saxitoxin  (EXP)
SB 431542  (ISO)
sertraline  (EXP,ISO)
simvastatin  (ISO)
sodium fluoride  (ISO)
staurosporine  (ISO)
streptozocin  (ISO)
sulforaphane  (EXP)
T-2 toxin  (ISO)
tamoxifen  (EXP)
tauroursodeoxycholic acid  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
zearalenone  (EXP)
zidovudine  (EXP)
zinc oxide  (EXP)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Abnormal alpha-synuclein reduces nigral voltage-dependent anion channel 1 in sporadic and experimental Parkinson's disease. Chu Y, etal., Neurobiol Dis. 2014 Sep;69:1-14. doi: 10.1016/j.nbd.2014.05.003. Epub 2014 May 10.
2. Quantitative proteomic profiling identifies new renal targets of copper(II)-selective chelation in the reversal of diabetic nephropathy in rats. Gong D, etal., Proteomics. 2009 Sep;9(18):4309-20. doi: 10.1002/pmic.200900285.
3. Preliminary explorations of the role of mitochondrial proteins in refractory epilepsy: some findings from comparative proteomics. Jiang W, etal., J Neurosci Res. 2007 Nov 1;85(14):3160-70.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Gene polymorphisms in the PI3K/AKT/mTOR signaling pathway contribute to prostate cancer susceptibility in Chinese men. Liu T, etal., Oncotarget. 2017 May 22;8(37):61305-61317. doi: 10.18632/oncotarget.18064. eCollection 2017 Sep 22.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. Mouse MP Annotation Import Pipeline RGD automated import pipeline
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Large-scale screen for genes involved in gonad development. Wertz K and Herrmann BG, Mech Dev 2000 Nov;98(1-2):51-70.
Additional References at PubMed
PMID:7671812   PMID:8660977   PMID:8726225   PMID:8812436   PMID:8889548   PMID:9228078   PMID:10349636   PMID:10525161   PMID:10716730   PMID:10922068   PMID:11042159   PMID:11044447  
PMID:11076861   PMID:11585841   PMID:11907043   PMID:12477932   PMID:12520002   PMID:12865426   PMID:12904583   PMID:12931191   PMID:14610273   PMID:14729675   PMID:15477379   PMID:15489334  
PMID:15782199   PMID:15818409   PMID:16141072   PMID:16141073   PMID:16291750   PMID:16602821   PMID:16626625   PMID:16916647   PMID:17049929   PMID:17114649   PMID:17207767   PMID:17208939  
PMID:17376863   PMID:17417626   PMID:17500595   PMID:17503466   PMID:17590433   PMID:17634366   PMID:17967808   PMID:18285568   PMID:18308720   PMID:18385140   PMID:18614015   PMID:18614564  
PMID:18799693   PMID:18805391   PMID:18988731   PMID:19049977   PMID:19094960   PMID:19261612   PMID:19423573   PMID:19461077   PMID:19574737   PMID:19646951   PMID:20005234   PMID:20214874  
PMID:20568244   PMID:20797535   PMID:20890124   PMID:20936704   PMID:21267068   PMID:21278135   PMID:21613372   PMID:21677750   PMID:21873635   PMID:21984432   PMID:22022409   PMID:22079573  
PMID:22117062   PMID:22240895   PMID:22275367   PMID:22794259   PMID:22926141   PMID:23028046   PMID:23110136   PMID:23754752   PMID:23843527   PMID:23948905   PMID:24040265   PMID:24245503  
PMID:24457600   PMID:24908397   PMID:25044020   PMID:25168729   PMID:25470454   PMID:26767982   PMID:26876175   PMID:27019864   PMID:27064145   PMID:27080741   PMID:27160897   PMID:27453471  
PMID:27553862   PMID:27653481   PMID:27738100   PMID:28188211   PMID:28288978   PMID:28398674   PMID:28449397   PMID:29111324   PMID:29279396   PMID:29669786   PMID:29747160   PMID:29916145  
PMID:29988383   PMID:30068389   PMID:30188326   PMID:30412693   PMID:30421242   PMID:30562941   PMID:30590033   PMID:30605136   PMID:31176038   PMID:31199454   PMID:31601784   PMID:31767755  
PMID:32047033   PMID:32290153   PMID:32294449   PMID:32325033   PMID:32525278   PMID:33230847   PMID:33378226   PMID:34401974   PMID:34799735   PMID:35047503   PMID:35124430   PMID:35649693  
PMID:35801276   PMID:35858425   PMID:35955694   PMID:36189989   PMID:36293380   PMID:36417873   PMID:36603706   PMID:36642847   PMID:36808153   PMID:36816741   PMID:37155882   PMID:37175593  
PMID:37280526   PMID:37493331   PMID:37712269   PMID:37737517   PMID:37797372   PMID:38100882   PMID:38464835  


Genomics

Comparative Map Data
Vdac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391152,251,905 - 52,280,224 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1152,251,687 - 52,280,224 (+)EnsemblGRCm39 Ensembl
GRCm381152,360,851 - 52,389,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1152,360,860 - 52,389,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371152,174,617 - 52,202,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361152,204,538 - 52,232,819 (+)NCBIMGSCv36mm8
Celera1156,932,845 - 56,961,186 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.86NCBI
VDAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385133,971,871 - 134,114,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5133,971,871 - 134,004,975 (-)EnsemblGRCh38hg38GRCh38
GRCh375133,307,562 - 133,450,231 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365133,335,506 - 133,368,332 (-)NCBINCBI36Build 36hg18NCBI36
Build 345133,335,505 - 133,368,332NCBI
Celera5129,431,292 - 129,464,120 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5128,492,511 - 128,525,784 (-)NCBIHuRef
CHM1_15132,740,167 - 132,773,436 (-)NCBICHM1_1
T2T-CHM13v2.05134,495,517 - 134,638,169 (-)NCBIT2T-CHM13v2.0
Vdac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81037,029,377 - 37,060,542 (+)NCBIGRCr8
mRatBN7.21036,532,306 - 36,559,642 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1036,532,244 - 36,559,640 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1041,225,788 - 41,253,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,715,759 - 40,743,034 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01036,219,484 - 36,246,760 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01037,724,915 - 37,752,827 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1037,724,915 - 37,752,826 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01037,498,352 - 37,525,819 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,795,721 - 37,823,253 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11037,802,150 - 37,829,682 (+)NCBI
Celera1035,886,487 - 35,913,291 (+)NCBICelera
Cytogenetic Map10q22NCBI
Vdac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554085,260,353 - 5,275,990 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554085,260,444 - 5,275,972 (-)NCBIChiLan1.0ChiLan1.0
VDAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24129,270,460 - 129,303,316 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15127,410,021 - 127,443,362 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05129,375,267 - 129,408,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15135,529,173 - 135,663,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5135,529,173 - 135,560,005 (-)Ensemblpanpan1.1panPan2
VDAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,197,814 - 22,212,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,197,949 - 22,212,924 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1120,943,845 - 20,970,964 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01122,998,225 - 23,025,442 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1122,998,225 - 23,025,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11121,698,673 - 21,725,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,563,273 - 21,590,651 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,206,295 - 22,233,311 (-)NCBIUU_Cfam_GSD_1.0
Vdac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213114,217,313 - 114,246,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366471,230,450 - 1,249,814 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366471,220,075 - 1,249,579 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VDAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2136,302,191 - 136,396,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12136,302,188 - 136,334,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22141,876,797 - 141,909,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VDAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12336,783,670 - 36,817,071 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603441,120,091 - 41,153,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vdac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473338,184,016 - 38,210,478 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473338,183,376 - 38,210,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vdac1
652 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:763
Count of miRNA genes:477
Interacting mature miRNAs:570
Transcripts:ENSMUST00000020673, ENSMUST00000102758, ENSMUST00000125694, ENSMUST00000153339, ENSMUST00000157052
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4141770Tcpm1_mT-cell phenotype modifier 1 (mouse)Not determined5145247953615930Mouse

Markers in Region
U30840  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381152,388,690 - 52,388,794UniSTSGRCm38
GRCm38131,737,059 - 31,737,162UniSTSGRCm38
MGSCv37131,793,904 - 31,794,007UniSTSGRCm37
MGSCv371152,202,192 - 52,202,296UniSTSGRCm37
Celera1156,960,480 - 56,960,584UniSTS
Celera131,532,198 - 31,532,301UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11716.53UniSTS
MARC_23885-23886:1031761371:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383154,523,508 - 154,524,307UniSTSGRCm38
MGSCv373154,186,472 - 154,187,271UniSTSGRCm37
Celera3160,981,310 - 160,982,109UniSTS
Cytogenetic Map3H4UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK002740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE952281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK621340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U30840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U89987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020673   ⟹   ENSMUSP00000020673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1152,265,090 - 52,279,350 (+)Ensembl
GRCm38.p6 Ensembl1152,374,263 - 52,388,523 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102758   ⟹   ENSMUSP00000099819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1152,251,687 - 52,280,224 (+)Ensembl
GRCm38.p6 Ensembl1152,360,860 - 52,389,397 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125694   ⟹   ENSMUSP00000116919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1152,251,962 - 52,279,323 (+)Ensembl
GRCm38.p6 Ensembl1152,361,135 - 52,388,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1152,278,024 - 52,279,618 (+)Ensembl
GRCm38.p6 Ensembl1152,387,197 - 52,388,791 (+)Ensembl
RefSeq Acc Id: ENSMUST00000157052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1152,264,927 - 52,267,602 (+)Ensembl
GRCm38.p6 Ensembl1152,374,100 - 52,376,775 (+)Ensembl
RefSeq Acc Id: NM_001362693   ⟹   NP_001349622
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391152,251,905 - 52,280,224 (+)NCBI
GRCm381152,361,597 - 52,389,397 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001400986   ⟹   NP_001387915
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391152,251,905 - 52,280,224 (+)NCBI
RefSeq Acc Id: NM_001400987   ⟹   NP_001387916
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391152,251,905 - 52,280,224 (+)NCBI
RefSeq Acc Id: NM_001400988   ⟹   NP_001387917
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391152,251,905 - 52,280,224 (+)NCBI
RefSeq Acc Id: NM_001400989   ⟹   NP_001387918
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391152,251,905 - 52,280,224 (+)NCBI
RefSeq Acc Id: NM_011694   ⟹   NP_035824
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391152,251,905 - 52,280,224 (+)NCBI
GRCm381152,360,851 - 52,389,397 (+)NCBI
MGSCv371152,174,617 - 52,202,898 (+)RGD
Celera1156,932,845 - 56,961,186 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035824   ⟸   NM_011694
- Peptide Label: isoform 2
- UniProtKB: Q3THL7 (UniProtKB/TrEMBL),   Q3TIG8 (UniProtKB/TrEMBL),   Q3U6K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349622   ⟸   NM_001362693
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000116919   ⟸   ENSMUST00000125694
RefSeq Acc Id: ENSMUSP00000020673   ⟸   ENSMUST00000020673
RefSeq Acc Id: ENSMUSP00000099819   ⟸   ENSMUST00000102758
RefSeq Acc Id: NP_001387918   ⟸   NM_001400989
- Peptide Label: isoform 2
- UniProtKB: Q3THL7 (UniProtKB/TrEMBL),   Q3TIG8 (UniProtKB/TrEMBL),   Q3U6K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387917   ⟸   NM_001400988
- Peptide Label: isoform 2
- UniProtKB: Q3THL7 (UniProtKB/TrEMBL),   Q3TIG8 (UniProtKB/TrEMBL),   Q3U6K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387916   ⟸   NM_001400987
- Peptide Label: isoform 4
- UniProtKB: Q3THL7 (UniProtKB/TrEMBL),   Q3TIG8 (UniProtKB/TrEMBL),   Q3U6K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387915   ⟸   NM_001400986
- Peptide Label: isoform 3
- UniProtKB: Q3THL7 (UniProtKB/TrEMBL),   Q3TIG8 (UniProtKB/TrEMBL),   Q3U6K8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60932-F1-model_v2 AlphaFold Q60932 1-296 view protein structure

Promoters
RGD ID:6822436
Promoter ID:MM_KWN:7346
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000102758,   OTTMUST00000012518
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361152,173,816 - 52,174,682 (+)MPROMDB
RGD ID:6822440
Promoter ID:MM_KWN:7347
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:ENSMUST00000020673,   OTTMUST00000012517
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361152,187,631 - 52,188,131 (+)MPROMDB
RGD ID:6822438
Promoter ID:MM_KWN:7348
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000039147
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361152,200,386 - 52,200,886 (+)MPROMDB
RGD ID:8674584
Promoter ID:EPDNEW_M15322
Type:initiation region
Name:Vdac1_2
Description:Mus musculus voltage-dependent anion channel 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15323  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381152,360,846 - 52,360,906EPDNEW
RGD ID:8674586
Promoter ID:EPDNEW_M15323
Type:initiation region
Name:Vdac1_1
Description:Mus musculus voltage-dependent anion channel 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15322  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381152,361,099 - 52,361,159EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106919 AgrOrtholog
Ensembl Genes ENSMUSG00000020402 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020673.3 UniProtKB/Swiss-Prot
  ENSMUST00000102758 ENTREZGENE
  ENSMUST00000102758.8 UniProtKB/Swiss-Prot
  ENSMUST00000125694.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.160.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Porin_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Porin_Euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Porin_Euk/Tom40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22333 UniProtKB/Swiss-Prot
MGD MGI:106919 ENTREZGENE
NCBI Gene 22333 ENTREZGENE
PANTHER PTHR11743 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11743:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Porin_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vdac1 PhenoGen
PRINTS EUKARYTPORIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EUKARYOTIC_PORIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F2Z471_MOUSE UniProtKB/TrEMBL
  Q3THL7 ENTREZGENE, UniProtKB/TrEMBL
  Q3TIG8 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6K8 ENTREZGENE, UniProtKB/TrEMBL
  Q60932 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B1ASZ9 UniProtKB/Swiss-Prot
  Q5SVC6 UniProtKB/Swiss-Prot