Slc25a20 (solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20) - Rat Genome Database

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Gene: Slc25a20 (solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20) Mus musculus
Analyze
Symbol: Slc25a20
Name: solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
RGD ID: 732536
MGI Page MGI
Description: Predicted to enable acyl carnitine transmembrane transporter activity. Acts upstream of or within in utero embryonic development. Located in mitochondrial inner membrane. Is expressed in cerebral cortex ventricular layer and cortical plate. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110007P09Rik; C78826; CAC; Cact; carnitine/acylcarnitine translocase; mCA; mCAC; mitochondrial carnitine-acylcarnitine translocase; mitochondrial carnitine/acylcarnitine carrier protein; solute carrier family 25 member 20
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,539,335 - 108,561,841 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,539,287 - 108,561,840 (+)EnsemblGRCm39 Ensembl
GRCm389108,662,136 - 108,684,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,662,088 - 108,684,641 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,564,429 - 108,586,972 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,519,502 - 108,542,045 (+)NCBIMGSCv36mm8
Celera9108,275,033 - 108,292,081 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(R)-carnitine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
aconitine  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
cefalotin  (ISO)
cefazolin  (ISO)
cefonicid  (ISO)
chloroacetaldehyde  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
ciprofibrate  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibrate  (EXP,ISO)
Clofop  (ISO)
copper(II) sulfate  (ISO)
corn oil  (EXP)
cyclosporin A  (EXP,ISO)
dexamethasone  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
diquat  (EXP)
dithioerythritol  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
farnesol  (ISO)
fenofibrate  (ISO)
finasteride  (ISO)
flutamide  (EXP)
folic acid  (EXP)
FR900359  (ISO)
glutathione  (ISO)
glycidyl methacrylate  (ISO)
GW 4064  (ISO)
GW 7647  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
ifosfamide  (ISO)
inulin  (EXP)
isoprenaline  (ISO)
ketoconazole  (ISO)
L-cysteine  (ISO)
lamivudine  (EXP)
leflunomide  (ISO)
lenvatinib  (EXP,ISO)
lipopolysaccharide  (ISO)
mercury dichloride  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Muraglitazar  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-acetyl-L-cysteine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
O-acetyl-L-carnitine  (ISO)
ochratoxin A  (ISO)
oleic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorododecanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
piperacillin  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pravastatin  (EXP)
propiconazole  (EXP)
Pyridostigmine bromide  (ISO)
quercetin  (ISO)
resveratrol  (EXP)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (ISO)
sunitinib  (ISO)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetracycline  (EXP)
thalidomide  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
zaragozic acid A  (EXP,ISO)
zidovudine  (EXP,ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Structural insight into function and regulation of carnitine palmitoyltransferase. Rufer AC, etal., Cell Mol Life Sci. 2009 Aug;66(15):2489-501. Epub 2009 May 9.
Additional References at PubMed
PMID:1420325   PMID:9399886   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11257506   PMID:12477932   PMID:12520002   PMID:12865426   PMID:14610273   PMID:14681479  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16916647   PMID:18614015   PMID:18799693   PMID:19577614   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22713466  
PMID:24969106   PMID:26465331   PMID:27996060   PMID:28185240   PMID:28378742   PMID:29539633   PMID:30550785   PMID:30973865   PMID:34321999   PMID:35733999   PMID:36114006   PMID:37225978  
PMID:38355793  


Genomics

Comparative Map Data
Slc25a20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,539,335 - 108,561,841 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,539,287 - 108,561,840 (+)EnsemblGRCm39 Ensembl
GRCm389108,662,136 - 108,684,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,662,088 - 108,684,641 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,564,429 - 108,586,972 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,519,502 - 108,542,045 (+)NCBIMGSCv36mm8
Celera9108,275,033 - 108,292,081 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.61NCBI
SLC25A20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38348,856,926 - 48,898,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl348,856,926 - 48,898,904 (-)EnsemblGRCh38hg38GRCh38
GRCh37348,894,359 - 48,936,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,869,368 - 48,911,333 (-)NCBINCBI36Build 36hg18NCBI36
Build 34348,869,368 - 48,911,333NCBI
Celera348,850,594 - 48,892,435 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef348,952,554 - 48,994,892 (-)NCBIHuRef
CHM1_1348,846,459 - 48,888,551 (-)NCBICHM1_1
T2T-CHM13v2.0348,885,896 - 48,927,887 (-)NCBIT2T-CHM13v2.0
Slc25a20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,243,573 - 118,265,027 (+)NCBIGRCr8
mRatBN7.28109,365,056 - 109,386,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,365,002 - 109,386,512 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,983,063 - 115,004,624 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,182,398 - 113,203,797 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,025,038 - 111,046,601 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,455,308 - 117,476,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,455,262 - 117,476,734 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,800,146 - 116,821,558 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,715,211 - 113,737,063 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,734,665 - 113,756,518 (+)NCBI
Celera8108,660,802 - 108,681,758 (+)NCBICelera
Cytogenetic Map8q32NCBI
Slc25a20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955532902,937 - 921,174 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955532902,937 - 933,675 (-)NCBIChiLan1.0ChiLan1.0
SLC25A20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2248,836,734 - 48,878,850 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1348,841,500 - 48,883,618 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0348,782,960 - 48,824,616 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1349,863,259 - 49,901,839 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,863,259 - 49,901,839 (-)Ensemblpanpan1.1panPan2
SLC25A20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,244,222 - 40,271,100 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,244,229 - 40,270,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2040,161,526 - 40,188,235 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,601,674 - 40,627,761 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,601,718 - 40,755,942 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,967,112 - 39,993,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,370,902 - 40,397,702 (+)NCBIUNSW_CanFamBas_1.0
Slc25a20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,846,541 - 63,871,412 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529606,804 - 631,991 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936529607,035 - 631,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,523,821 - 31,553,286 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,523,820 - 31,553,289 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,777,394 - 34,804,819 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,261,772 - 10,300,878 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,261,634 - 10,300,778 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,788,381 - 156,827,761 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247302,832,233 - 2,860,796 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247302,833,785 - 2,860,711 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a20
596 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:218
Interacting mature miRNAs:249
Transcripts:ENSMUST00000035222
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse

Markers in Region
RH126444  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,684,189 - 108,684,435UniSTSGRCm38
MGSCv379108,586,520 - 108,586,766UniSTSGRCm37
Celera9108,291,628 - 108,291,874UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91110.61UniSTS
BE106540  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,683,100 - 108,683,857UniSTSGRCm38
MGSCv379108,585,431 - 108,586,188UniSTSGRCm37
Celera9108,290,533 - 108,291,296UniSTS
Cytogenetic Map9F2UniSTS
Slc25a20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F2UniSTS
cM Map959.61UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000035222   ⟹   ENSMUSP00000035222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,539,297 - 108,561,840 (+)Ensembl
GRCm38.p6 Ensembl9108,662,098 - 108,684,641 (+)Ensembl
Ensembl Acc Id: ENSMUST00000194088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,539,287 - 108,542,037 (+)Ensembl
GRCm38.p6 Ensembl9108,662,088 - 108,664,838 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,549,695 - 108,557,948 (+)Ensembl
GRCm38.p6 Ensembl9108,672,496 - 108,680,749 (+)Ensembl
RefSeq Acc Id: NM_020520   ⟹   NP_065266
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,539,335 - 108,561,841 (+)NCBI
GRCm389108,662,136 - 108,684,642 (+)NCBI
MGSCv379108,564,429 - 108,586,972 (+)RGD
Celera9108,275,033 - 108,292,081 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_065266   ⟸   NM_020520
- UniProtKB: Q9Z2Z6 (UniProtKB/Swiss-Prot),   Q3U801 (UniProtKB/Swiss-Prot),   Q7TPW6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000035222   ⟸   ENSMUST00000035222

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2Z6-F1-model_v2 AlphaFold Q9Z2Z6 1-301 view protein structure

Promoters
RGD ID:6845156
Promoter ID:MM_KWN:58820
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_020520
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,564,294 - 108,564,794 (+)MPROMDB
RGD ID:8670938
Promoter ID:EPDNEW_M13493
Type:initiation region
Name:Slc25a20_1
Description:Mus musculus solute carrier family 25 (mitochondrial carnitine/acylcarnitinetranslocase), member 20 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,662,146 - 108,662,206EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1928738 AgrOrtholog
Ensembl Genes ENSMUSG00000032602 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000035222 ENTREZGENE
  ENSMUST00000035222.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Mitochondrial_Carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57279 UniProtKB/Swiss-Prot
MGD MGI:1928738 ENTREZGENE
NCBI Gene 57279 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITOCHONDRIAL CARNITINE/ACYLCARNITINE CARRIER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc25a20 PhenoGen
PROSITE SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt MCAT_MOUSE UniProtKB/Swiss-Prot
  Q3U801 ENTREZGENE
  Q7TPW6 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z2Z6 ENTREZGENE
UniProt Secondary Q3U801 UniProtKB/Swiss-Prot