Gene: CLSTN2-AS1 (CLSTN2 antisense RNA 1) Homo sapiens
Analyze
Symbol:
CLSTN2-AS1
Name:
CLSTN2 antisense RNA 1
RGD ID:
7325225
HGNC Page
HGNC:49095
Description:
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 3 140,505,618 - 140,508,789 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 3 140,505,611 - 140,508,789 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 3 140,224,460 - 140,227,631 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 3 q23 NCBI HuRef 3 137,599,793 - 137,602,976 (-) NCBI HuRef CHM1_1 3 140,188,084 - 140,191,267 (-) NCBI CHM1_1 T2T-CHM13v2.0 3 143,252,920 - 143,256,091 (-) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 128 Count of miRNA genes: 125 Interacting mature miRNAs: 128 Transcripts: ENST00000513309 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
adipose tissue
appendage
entire extraembryonic component
High
Medium
Low
2
5
7
3
80
3
91
1
13
19
401
6
98
15
Below cutoff
779
1013
817
110
482
45
2517
780
1836
201
633
625
65
899
1572
2
Sequence
RefSeq Acc Id:
ENST00000513309
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 3 140,505,611 - 140,508,789 (-) Ensembl
RefSeq Acc Id:
NR_108084
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 3 140,505,618 - 140,508,789 (-) NCBI HuRef 3 137,599,793 - 137,602,964 (-) NCBI CHM1_1 3 140,188,084 - 140,191,255 (-) NCBI T2T-CHM13v2.0 3 143,252,920 - 143,256,091 (-) NCBI
Sequence:
CAGCTGCTGTCTGTCAGGGCCCTGGGCACAGATTCAGAGCTGCAGAGGCACAGCCTGCCTGTTG TCGGTTGTAAGTGCCCATGTACAGAGTGAGTTTAATATTTGAGCAGGCCAGGAAGCACCTGTCT TAAATTTGGCAATTAGGAAAGGGAATATTTCTCCTCATGTGTTCCCTCTCTGAACACAATAAAC TGCACAAAGACTAAGCAGATCGCTTGCCTCCAAATAGGAATTGTCTTCAAAGAGAGTCATTTTA GGATGGGGGTGAGGTCCCATCCTATGGGTTCTAACACCTCCTGCAAAAGCCTCTGAGCTTCTCA AGGTAAGTATAAGGGATATGATAGCCATTCAACAATTAGTATGTATTGGCAGATCAACTGACTG ACTGAATGAATGAACAAATGATTGCATTAAGAGCTAGCGACCCTGGAAATGATTCCTGTAGAAA AGGAGAATATGAGGGTCCAGCTTGGAAACTGGGAGGGCGTTCCTGGGGATAAGGCCATGTCTGT GCCAAATCCTTGGAATTCTAGCAAACTCAGCAGTGCCGTCTGTCCAAGAAAAAGAGTTGAGAAG TCCCTGGCAGACACAGAGGGTTTTGGTTAGAAGATGAGGGCCCCATGGGGAGAAGGAAGGAGGG TACAAGTCATCAGATATGAGTGAGTCCCCATAAGACTCTAGCTAGGGAGGGGCCAATGCATGTT GCACAGGTCTCCTCACCAGTCTGTGGCTTCCATGCACATTCTGGGGATAGCAGCACCTATTTGG ATTTCCACTGAAAGGTAGTGGCTTTGAAGTGAGTTGGCTCAGGGGAAATTTCAGCTCTATCCAC TTACTTGGGATTGGAACTTGGGGCAAGTTTCTTAAACTTGCTGAGTGTAGTTTCTTCATCTATA AGATGGGTAGAAAATCTATCTTGCAGGAAGAATCGATTATTTATTAAATAGGTATTTATTGGTA TGAGGTCACACATTATGTTAGGTGCTGAATATAGAAAGTAAAAATAGACATAGCTCTTTCCCTT AGGTGACAGACAGAAAATTAAACACTCACGTAAATAAATGTAACATTATGTCTATAAGACATCC TATGAGTAGAGGTACAAGGTGTCATACAAGCCCATAATAGAGGAATTTTACCTAGTTTTGGAGA TCAGAAAGTGATGGTGAAGGAAAGGACGAGGATGAATGTCACAGCATTCAAGGCAGACAGAACA AGCAAAGGCAGCACCCTGTGGCACAGAAGCGAGGGGTGGGTTTGTGATATAGGGGTAGAGGGCA GGTGCCTTCTCCTACCCCTGCTCCTGTCAGCACACCGGTGGGTCTACCTCACCCCAAACCATGG GGATGCCCATTCCAACCTTGGAGGAAGGCTATACATAGCACAGTTCCATGTTGAGGCTGTGGAA CCCGACCCCTCAGGTTCAAATTCTGATTTGATCACGTCCTGACTGCGTGATCTCAGGAGAGTTA GTTACATTTCCTGTCTGTGCCTCAAACAGAAATGATAACACTAGTAACTACCTTGAGGGGTTGT GATGATTGAGTTAATACATGTAAAACGCTTAGAACACTGGCTTACCTCATAAGTGCTAAAAGGA GTAGGTGTTACTCCTGACATTCCTTCCTTAACTCATGGCCCTCAGTTATAATACTTACATGGTT CTCGGCATGAGCCCTCTTCCCTCCCTCTGCCCAGTCCAGGAAGAGGCTCAACCCCCGATGTTCC TCATCACCCCATCTGGACCAGTGTGACTGCACCAGCCTGTAGCATTCTCTGTCCATCCCGGTCC CTCACATATTCAAGACACACATGTAATTTTACATTTTCCAGTAGCCATATTAGAAAAGTAAAAA GAAACAGGTGAATTTAATACTGTACTTTAGTCCAATATAGCCATTTATCATTTCAACATGTAAT TAATATTAAAAATTATTACATTTTACATTCTGTTTTTGTACTCTTTCCAATCCATCATGATTTT ACCCTAGCAGCACACTTCAATTTGGACTAGCCACATTTCAAGTGCTTGACAGTCACAGGTGACT AATGGCTCTCCTATGGGTTATAGCCCAGCTCTTGACTCTTTGATCCACAAGGATAAGAACCACA TCCACTTCCACATCTCCAGGTATGAGGCAGATAAATAGCAGAGAGTGATTACACAAAACTCTTC TCACCACGGATTCCGGCATTTGTGGGCAGCTGCAGAAGAGTAGGTGGGAGGATCTCCCAGATTA TGAGGCCAGTTTTTCTGTGGCTCAGAGACTGCCAGTGACTCGCTCAAGATAAAACAGCTTGTTA GTGGCAGGGATGGAGCCCAGAAATCCTGTTTCCTGTCCTCAGGAGTGTGTGTTCGAAAGAAGTT CTTGGCAAAGGTGAGAATAAATCATAGGCTCTTTGAAGAGGACTCCAGTGTATTAAACAAATAG GTTGCTGAGATGCAGTTAACTACTCAGTAATGTAGTTGAAGAAAATTAATTTTTCATTCTGCCA CTCAGAATATCGAGGCTGGCCATCTGTAAACACAGCCTGTCTCTAGGAGAACAGAGGTGGAATC CTCCTTGCAAGTTTAAAAAAATAACAGAGTAATCTCAGTGGATGTCTTAAGAGAAACATAATTA TAATTTAGTTGACATATCTCATATCTCAGTGATGGTAAATAAACCTTCCCTAAATAATTCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
hide sequence
Promoters
RGD ID: 15095722
Promoter ID: EPDNEWNC_H509
Type: initiation region
Name: CLSTN2-AS1_1
Description: CLSTN2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:49095]
SO ACC ID: SO:0000170
Source: EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.; Paired-end sequencing.
Position: Human Assembly Chr Position (strand) Source GRCh38 3 140,508,788 - 140,508,848 EPDNEWNC
Additional Information