Rbbp7 (retinoblastoma binding protein 7, chromatin remodeling factor) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rbbp7 (retinoblastoma binding protein 7, chromatin remodeling factor) Mus musculus
Analyze
Symbol: Rbbp7
Name: retinoblastoma binding protein 7, chromatin remodeling factor
RGD ID: 732413
MGI Page MGI
Description: Enables RNA binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleus. Part of ESC/E(Z) complex and NuRD complex. Is expressed in several structures, including brain; early conceptus; genitourinary system; hemolymphoid system; and submandibular gland primordium. Orthologous to human RBBP7 (RB binding protein 7, chromatin remodeling factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA409861; AI173248; AU019541; BB114024; G1/S transition control protein-binding protein; histone acetyltransferase type B subunit 2; histone-binding protein RBBP7; mRbAp46; nucleosome-remodeling factor subunit RBAP46; RBBP-7; retinoblastoma binding protein 7; retinoblastoma-binding protein 7; retinoblastoma-binding protein p46
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm6382  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,543,368 - 161,562,086 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,543,398 - 161,562,088 (+)EnsemblGRCm39 Ensembl
GRCm38X162,760,372 - 162,779,090 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,760,402 - 162,779,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X159,198,304 - 159,217,022 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X158,104,564 - 158,123,195 (+)NCBIMGSCv36mm8
MGSCv36X139,886,392 - 139,905,148 (+)NCBIMGSCv36mm8
CeleraX145,966,574 - 146,004,291 (+)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX74.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
afimoxifene  (ISO)
all-trans-retinoic acid  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
cisplatin  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dibenzofurans  (EXP)
dicrotophos  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
methoxyacetic acid  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (EXP)
nefazodone  (ISO)
nickel subsulfide  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP)
promegestone  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium dichromate  (ISO)
sulindac  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
trichloroethene  (ISO)
triptonide  (EXP)
uranium atom  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. The nucleosome remodeling and deacetylase complex in development and disease. Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
2. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3. SET for life: biochemical activities and biological functions of SET domain-containing proteins. Herz HM, etal., Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Epub 2013 Oct 20.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
6. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
13. Characterization of the gene encoding mouse retinoblastoma binding protein-7, a component of chromatin-remodeling complexes. Yang J, etal., Genomics 2002 Oct;80(4):407-15.
Additional References at PubMed
PMID:7503932   PMID:9651585   PMID:10349636   PMID:10920247   PMID:10922068   PMID:10984530   PMID:11042159   PMID:11076861   PMID:11788710   PMID:11836251   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14609955   PMID:14610273   PMID:14645126   PMID:15489334   PMID:15782199   PMID:15920471   PMID:16141072   PMID:16141073   PMID:16428440   PMID:16462733   PMID:17296600  
PMID:18454139   PMID:18799693   PMID:19189660   PMID:19521500   PMID:19654328   PMID:19927129   PMID:20059953   PMID:20064376   PMID:20144788   PMID:20211142   PMID:20362541   PMID:20548051  
PMID:21267068   PMID:21490601   PMID:21677750   PMID:21731673   PMID:21873635   PMID:22083510   PMID:22323595   PMID:22354994   PMID:22438827   PMID:22560079   PMID:22770845   PMID:22865885  
PMID:22911650   PMID:22984288   PMID:24317350   PMID:25330109   PMID:25680957   PMID:26040671   PMID:26365490   PMID:27113764   PMID:27806305   PMID:28378742   PMID:28554894   PMID:29078390  
PMID:30186101   PMID:30196744   PMID:30457570   PMID:30595499   PMID:30973865   PMID:31162944   PMID:31451685   PMID:32098917   PMID:32325033   PMID:33798452   PMID:33978814   PMID:34180153  
PMID:34524839   PMID:35695185   PMID:36114006   PMID:36414375   PMID:37839992   PMID:37843278  


Genomics

Comparative Map Data
Rbbp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,543,368 - 161,562,086 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,543,398 - 161,562,088 (+)EnsemblGRCm39 Ensembl
GRCm38X162,760,372 - 162,779,090 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,760,402 - 162,779,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X159,198,304 - 159,217,022 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X158,104,564 - 158,123,195 (+)NCBIMGSCv36mm8
MGSCv36X139,886,392 - 139,905,148 (+)NCBIMGSCv36mm8
CeleraX145,966,574 - 146,004,291 (+)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX74.97NCBI
RBBP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,844,341 - 16,870,362 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,839,283 - 16,870,362 (-)EnsemblGRCh38hg38GRCh38
GRCh37X16,862,464 - 16,888,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,772,698 - 16,798,386 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X16,622,433 - 16,648,114NCBI
CeleraX20,981,704 - 21,007,178 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX14,623,294 - 14,649,232 (-)NCBIHuRef
CHM1_1X16,893,198 - 16,918,914 (-)NCBICHM1_1
T2T-CHM13v2.0X16,426,872 - 16,452,877 (-)NCBIT2T-CHM13v2.0
Rbbp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X35,544,873 - 35,563,030 (-)NCBIGRCr8
mRatBN7.2X31,913,080 - 31,931,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX31,913,081 - 31,931,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX32,947,379 - 32,965,537 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X36,382,894 - 36,401,051 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X32,571,785 - 32,589,943 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X33,648,682 - 33,665,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,648,682 - 33,665,821 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X33,995,673 - 34,012,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X52,669,703 - 52,688,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X52,723,171 - 52,741,801 (-)NCBI
CeleraX32,216,768 - 32,234,925 (-)NCBICelera
Cytogenetic MapXq14NCBI
Rbbp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555191,460,199 - 1,482,699 (+)NCBIChiLan1.0ChiLan1.0
RBBP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X18,640,519 - 18,667,013 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X18,643,907 - 18,669,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X9,465,579 - 9,491,096 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X16,834,802 - 16,859,575 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX16,834,811 - 16,859,575 (-)Ensemblpanpan1.1panPan2
RBBP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X12,981,852 - 13,006,049 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX12,981,860 - 13,006,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX12,833,201 - 12,857,396 (-)NCBIDog10K_Boxer_Tasha
Rbbp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X6,107,735 - 6,133,089 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364706,104,510 - 6,133,185 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364706,107,754 - 6,133,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBBP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX13,280,977 - 13,317,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X13,293,278 - 13,317,074 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X14,288,824 - 14,312,580 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBBP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,268,650 - 15,294,648 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX15,269,026 - 15,294,592 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605617,122,978 - 17,149,020 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbbp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248291,544,788 - 1,567,425 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248291,544,781 - 1,567,301 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbbp7
295 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:976
Count of miRNA genes:537
Interacting mature miRNAs:656
Transcripts:ENSMUST00000033720, ENSMUST00000112326, ENSMUST00000112327, ENSMUST00000138791, ENSMUST00000143681
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse
1357619Obsty5_mobesity 5 (mouse)Not determinedX160212893164149284Mouse

Markers in Region
RH136436  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X162,778,516 - 162,778,716UniSTSGRCm38
GRCm38X142,211,925 - 142,212,126UniSTSGRCm38
MGSCv37X138,646,468 - 138,646,669UniSTSGRCm37
MGSCv37X159,216,448 - 159,216,648UniSTSGRCm37
CeleraX146,003,717 - 146,003,917UniSTS
CeleraX126,207,324 - 126,207,525UniSTS
Cytogenetic MapXF2UniSTS
Cytogenetic MapXF4UniSTS
RH132537  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X162,778,515 - 162,778,720UniSTSGRCm38
GRCm38X142,211,924 - 142,212,130UniSTSGRCm38
MGSCv37X138,646,467 - 138,646,673UniSTSGRCm37
MGSCv37X159,216,447 - 159,216,652UniSTSGRCm37
CeleraX146,003,716 - 146,003,921UniSTS
CeleraX126,207,323 - 126,207,529UniSTS
Cytogenetic MapXF2UniSTS
Cytogenetic MapXF4UniSTS
AI173248  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X142,211,812 - 142,211,929UniSTSGRCm38
GRCm38X162,778,403 - 162,778,520UniSTSGRCm38
MGSCv37X159,216,335 - 159,216,452UniSTSGRCm37
MGSCv37X138,646,355 - 138,646,472UniSTSGRCm37
CeleraX146,003,604 - 146,003,721UniSTS
CeleraX126,207,211 - 126,207,328UniSTS
Cytogenetic MapXF2UniSTS
Cytogenetic MapXF4UniSTS
Whitehead/MRC_RHX1895.17UniSTS
RH124898  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X142,211,916 - 142,212,142UniSTSGRCm38
GRCm38X162,778,507 - 162,778,732UniSTSGRCm38
MGSCv37X159,216,439 - 159,216,664UniSTSGRCm37
MGSCv37X138,646,459 - 138,646,685UniSTSGRCm37
CeleraX146,003,708 - 146,003,933UniSTS
CeleraX126,207,315 - 126,207,541UniSTS
Cytogenetic MapXF2UniSTS
Cytogenetic MapXF4UniSTS
RH141702  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,778,953 - 104,779,160UniSTSGRCm38
GRCm38X162,779,158 - 162,779,365UniSTSGRCm38
MGSCv37X159,217,090 - 159,217,297UniSTSGRCm37
MGSCv375105,207,972 - 105,208,179UniSTSGRCm37
CeleraX146,004,359 - 146,004,566UniSTS
Cytogenetic MapXF4UniSTS
Cytogenetic Map5E5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK076016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA556887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U35142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000033720   ⟹   ENSMUSP00000033720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,543,398 - 161,562,088 (+)Ensembl
GRCm38.p6 EnsemblX162,760,402 - 162,779,092 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112326   ⟹   ENSMUSP00000107945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,543,458 - 161,558,891 (+)Ensembl
GRCm38.p6 EnsemblX162,760,462 - 162,775,895 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112327   ⟹   ENSMUSP00000107946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,543,417 - 161,561,752 (+)Ensembl
GRCm38.p6 EnsemblX162,760,421 - 162,778,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138791   ⟹   ENSMUSP00000114734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,544,062 - 161,555,226 (+)Ensembl
GRCm38.p6 EnsemblX162,761,066 - 162,772,230 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143681   ⟹   ENSMUSP00000115354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,557,574 - 161,561,441 (+)Ensembl
GRCm38.p6 EnsemblX162,774,578 - 162,778,445 (+)Ensembl
RefSeq Acc Id: NM_009031   ⟹   NP_033057
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X161,543,368 - 161,562,086 (+)NCBI
GRCm38X162,760,372 - 162,779,090 (+)ENTREZGENE
MGSCv37X159,198,304 - 159,217,022 (+)RGD
CeleraX145,960,892 - 146,004,291 (+)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030251353   ⟹   XP_030107213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X161,543,845 - 161,561,791 (+)NCBI
GRCm38X162,760,849 - 162,778,795 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033057   ⟸   NM_009031
- UniProtKB: A2AFJ0 (UniProtKB/Swiss-Prot),   Q3UX20 (UniProtKB/Swiss-Prot),   Q60973 (UniProtKB/Swiss-Prot),   Q8C5H3 (UniProtKB/TrEMBL),   Q3UJI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107213   ⟸   XM_030251353
- Peptide Label: isoform X1
- UniProtKB: Q3UX53 (UniProtKB/TrEMBL),   Q3UJI2 (UniProtKB/TrEMBL),   Q8C5H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000114734   ⟸   ENSMUST00000138791
RefSeq Acc Id: ENSMUSP00000115354   ⟸   ENSMUST00000143681
RefSeq Acc Id: ENSMUSP00000107946   ⟸   ENSMUST00000112327
RefSeq Acc Id: ENSMUSP00000107945   ⟸   ENSMUST00000112326
RefSeq Acc Id: ENSMUSP00000033720   ⟸   ENSMUST00000033720
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60973-F1-model_v2 AlphaFold Q60973 1-425 view protein structure

Promoters
RGD ID:6846245
Promoter ID:MM_KWN:62648
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112321,   ENSMUST00000112327,   OTTMUST00000041756,   OTTMUST00000046549,   UC009UUF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X159,197,591 - 159,198,472 (+)MPROMDB
RGD ID:6849295
Promoter ID:MM_XEF:8009
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Lung
Transcripts:NM_001022873,   NM_001057276,   NM_001070345,   NM_001086895,   NM_001111718,   NM_001112086,   NM_060151,   NM_125208,   NM_127230,   NM_203954,   NM_204670,   NM_212610
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X159,199,056 - 159,199,556 (+)MPROMDB
RGD ID:6846247
Promoter ID:MM_KWN:62649
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000041759
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X159,212,151 - 159,212,982 (+)MPROMDB
RGD ID:13681778
Promoter ID:EPDNEW_M25038
Type:initiation region
Name:Rbbp7_1
Description:Mus musculus retinoblastoma binding protein 7, chromatin remodelingfactor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X162,760,402 - 162,760,462EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1194910 AgrOrtholog
Ensembl Genes ENSMUSG00000031353 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033720 ENTREZGENE
  ENSMUST00000033720.12 UniProtKB/Swiss-Prot
  ENSMUST00000112326.8 UniProtKB/TrEMBL
  ENSMUST00000112327.8 UniProtKB/TrEMBL
  ENSMUST00000138791.2 UniProtKB/TrEMBL
  ENSMUST00000143681.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone-bd_RBBP4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:245688 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1194910 ENTREZGENE
NCBI Gene 245688 ENTREZGENE
PANTHER HISTONE-BINDING PROTEIN RBBP7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 REPEAT FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAF1C_H4-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbbp7 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AFI9_MOUSE UniProtKB/TrEMBL
  A2AFJ0 ENTREZGENE
  A2AFJ1_MOUSE UniProtKB/TrEMBL
  F6U539_MOUSE UniProtKB/TrEMBL
  F6ZLC6_MOUSE UniProtKB/TrEMBL
  Q3UJI2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UX20 ENTREZGENE
  Q3UX53 ENTREZGENE, UniProtKB/TrEMBL
  Q60973 ENTREZGENE
  Q8C5H3 ENTREZGENE, UniProtKB/TrEMBL
  RBBP7_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AFJ0 UniProtKB/Swiss-Prot
  Q3UX20 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-14 Rbbp7  retinoblastoma binding protein 7, chromatin remodeling factor    retinoblastoma binding protein 7  Symbol and/or name change 5135510 APPROVED