Rab11a (RAB11A, member RAS oncogene family) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rab11a (RAB11A, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab11a
Name: RAB11A, member RAS oncogene family
RGD ID: 732394
MGI Page MGI
Description: Predicted to enable several functions, including G protein activity; GTP binding activity; and cytoskeletal protein binding activity. Involved in melanosome transport. Acts upstream of or within protein localization to cell surface and protein transmembrane transport. Located in centriole; membrane; and recycling endosome. Is expressed in several structures, including adrenal gland; early conceptus; esophagus; eye; and genitourinary system. Orthologous to human RAB11A (RAB11A, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: rab-11; ras-related protein Rab-11A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18678  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39964,622,582 - 64,645,038 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl964,622,581 - 64,645,040 (-)EnsemblGRCm39 Ensembl
GRCm38964,715,300 - 64,737,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl964,715,299 - 64,737,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv37964,563,107 - 64,585,563 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36964,514,239 - 64,535,762 (-)NCBIMGSCv36mm8
Celera961,945,730 - 61,968,176 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid-beta clearance by transcytosis  (IEA,ISO)
astral microtubule organization  (IEA,ISO)
early endosome to recycling endosome transport  (IEA,ISO)
establishment of protein localization to membrane  (IEA,ISO)
establishment of protein localization to organelle  (IEA,ISO)
establishment of vesicle localization  (ISO)
exocytosis  (IBA)
exosomal secretion  (IEA,ISO)
melanosome transport  (IBA,IMP)
mitotic metaphase chromosome alignment  (IEA,ISO)
mitotic spindle assembly  (IEA,ISO)
multivesicular body assembly  (IEA,ISO)
neuron projection development  (ISO,ISS)
neurotransmitter receptor transport, endosome to postsynaptic membrane  (IBA,ISO)
positive regulation of epithelial cell migration  (IEA,ISO)
positive regulation of G2/M transition of mitotic cell cycle  (IEA,ISO)
positive regulation of mitotic cytokinetic process  (IEA,ISO)
positive regulation of protein localization to plasma membrane  (ISO)
protein localization to cell surface  (IMP)
protein localization to cilium  (ISO,ISS)
protein localization to plasma membrane  (ISO,ISS)
protein transmembrane transport  (IMP)
regulation of cilium assembly  (ISO,ISS)
regulation of cytokinesis  (ISO)
regulation of early endosome to recycling endosome transport  (ISO,ISS)
regulation of endocytic recycling  (ISO,ISS)
regulation of long-term neuronal synaptic plasticity  (ISO)
regulation of protein localization to centrosome  (ISO,ISS)
regulation of protein transport  (ISO)
regulation of vesicle-mediated transport  (ISO)
synaptic vesicle endosomal processing  (ISO)
vesicle-mediated transport  (ISO)
vesicle-mediated transport in synapse  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal crypts of Lieberkuhn morphology  (IAGP)
abnormal cytokine secretion  (IAGP)
abnormal digestive system physiology  (IAGP)
abnormal intestinal epithelium morphology  (IAGP)
abnormal intestinal goblet cell morphology  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal intestine physiology  (IAGP)
abnormal small intestinal crypt cell physiology  (IAGP)
abnormal small intestinal crypt cell proliferation  (IAGP)
abnormal small intestinal villus morphology  (IAGP)
absent head fold  (IEA)
absent primitive node  (IEA)
decreased body size  (IAGP)
decreased colon length  (IAGP)
decreased egg cylinder size  (IEA)
decreased embryo size  (IEA)
decreased small intestinal villus size  (IAGP)
decreased tumor-free survival time  (IAGP)
embryonic growth arrest  (IEA)
embryonic lethality between implantation and placentation, complete penetrance  (IEA)
embryonic lethality prior to organogenesis  (IEA)
failure of primitive streak formation  (IEA)
failure to gastrulate  (IEA)
improved glucose tolerance  (IEA)
increased cytokine level  (IAGP)
increased incidence of tumors by chemical induction  (IAGP)
increased interleukin-1 beta secretion  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased intestinal adenoma incidence  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
intestinal inflammation  (IAGP)
persistence of hyaloid vascular system  (IEA)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Physiology and pathophysiology of the vasopressin-regulated renal water reabsorption. Boone M and Deen PM, Pflugers Arch. 2008 Sep;456(6):1005-24. Epub 2008 Apr 23.
2. Rab proteins in endocytosis and Glut4 trafficking. Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Overview of macroautophagy regulation in mammalian cells. Mehrpour M, etal., Cell Res. 2010 Jul;20(7):748-62. Epub 2010 Jun 15.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. A Role of myosin Vb and Rab11-FIP2 in the aquaporin-2 shuttle. Nedvetsky PI, etal., Traffic. 2007 Feb;8(2):110-23. Epub 2006 Dec 6.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. GLUT4 translocation: the last 200 nanometers. Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
13. Insulin action on glucose transporters through molecular switches, tracks and tethers. Zaid H, etal., Biochem J. 2008 Jul 15;413(2):201-15.
Additional References at PubMed
PMID:10349636   PMID:10708602   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11773082   PMID:11856727   PMID:12477932   PMID:12520002   PMID:12578829   PMID:12904583   PMID:15229288  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16354700   PMID:16923123   PMID:18179777   PMID:18614015   PMID:18656450   PMID:19061864   PMID:19335615   PMID:19699304  
PMID:20059953   PMID:20190753   PMID:20357106   PMID:21291502   PMID:21677750   PMID:21743464   PMID:21873635   PMID:21983562   PMID:22129970   PMID:22139371   PMID:22340494   PMID:22465952  
PMID:22542623   PMID:22573681   PMID:22794259   PMID:22854957   PMID:23223633   PMID:23435566   PMID:23873150   PMID:24035762   PMID:24153428   PMID:24194600   PMID:24672056   PMID:25063677  
PMID:25131634   PMID:25271168   PMID:25378153   PMID:25526803   PMID:25527643   PMID:25673875   PMID:25799061   PMID:25942483   PMID:26004511   PMID:26071406   PMID:26084694   PMID:26496610  
PMID:26663395   PMID:26786190   PMID:27019864   PMID:27529348   PMID:27542690   PMID:27623148   PMID:28053235   PMID:28378742   PMID:28465352   PMID:28482867   PMID:28576874   PMID:28596241  
PMID:28910634   PMID:29038301   PMID:29158485   PMID:29222402   PMID:29330353   PMID:29514919   PMID:30209134   PMID:31213539   PMID:31239271   PMID:31300538   PMID:31388001   PMID:31628178  
PMID:31813796   PMID:31871317   PMID:31954765   PMID:32825931   PMID:33142674   PMID:33500317   PMID:33547291   PMID:34242681   PMID:34588579   PMID:34747973   PMID:36398878   PMID:36724075  
PMID:37172642   PMID:37225424   PMID:37424454   PMID:37737843   PMID:37770900   PMID:38294869   PMID:38355793  


Genomics

Comparative Map Data
Rab11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39964,622,582 - 64,645,038 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl964,622,581 - 64,645,040 (-)EnsemblGRCm39 Ensembl
GRCm38964,715,300 - 64,737,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl964,715,299 - 64,737,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv37964,563,107 - 64,585,563 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36964,514,239 - 64,535,762 (-)NCBIMGSCv36mm8
Celera961,945,730 - 61,968,176 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.87NCBI
RAB11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,869,491 - 65,891,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,726,054 - 65,891,989 (+)EnsemblGRCh38hg38GRCh38
GRCh371566,161,829 - 66,184,327 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,948,850 - 63,968,846 (+)NCBINCBI36Build 36hg18NCBI36
Build 341563,948,849 - 63,968,846NCBI
Celera1543,039,718 - 43,059,714 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,986,532 - 43,009,063 (+)NCBIHuRef
CHM1_11566,279,669 - 66,302,201 (+)NCBICHM1_1
T2T-CHM13v2.01563,678,915 - 63,701,413 (+)NCBIT2T-CHM13v2.0
Rab11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,118,922 - 74,141,760 (-)NCBIGRCr8
mRatBN7.2865,223,698 - 65,246,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl865,222,949 - 65,246,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx870,737,827 - 70,760,586 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0869,010,409 - 69,033,168 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0866,880,396 - 66,903,155 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0870,192,975 - 70,215,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl870,192,975 - 70,215,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0869,896,587 - 69,919,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,931,925 - 68,979,514 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1868,950,978 - 68,998,568 (-)NCBI
Celera864,627,832 - 64,650,008 (-)NCBICelera
Cytogenetic Map8q24NCBI
Rab11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554509,638,761 - 9,656,603 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554509,638,761 - 9,656,291 (-)NCBIChiLan1.0ChiLan1.0
RAB11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,116,127 - 55,138,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11559,288,585 - 59,308,848 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01544,810,880 - 44,833,438 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,088,084 - 63,108,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,088,084 - 63,108,077 (+)Ensemblpanpan1.1panPan2
RAB11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,200,831 - 30,218,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,200,831 - 30,218,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,128,206 - 30,145,797 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03030,390,944 - 30,408,531 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3030,390,701 - 30,412,317 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13030,320,666 - 30,338,234 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03030,383,756 - 30,401,404 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03030,624,755 - 30,642,365 (+)NCBIUU_Cfam_GSD_1.0
Rab11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,241,149 - 108,264,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647126,088,852 - 26,113,433 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647126,089,216 - 26,111,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,858,123 - 163,891,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,858,254 - 163,887,741 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21181,463,316 - 181,492,724 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12617,682,629 - 17,702,325 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2617,682,874 - 17,702,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048123,739,221 - 123,760,752 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247816,699,926 - 6,718,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247816,699,926 - 6,718,020 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab11a
753 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1302
Count of miRNA genes:484
Interacting mature miRNAs:586
Transcripts:ENSMUST00000004892, ENSMUST00000165083, ENSMUST00000166857, ENSMUST00000167569, ENSMUST00000168366, ENSMUST00000169058, ENSMUST00000171100, ENSMUST00000172298, ENSMUST00000172444
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse

Markers in Region
AI602490  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38964,716,706 - 64,716,891UniSTSGRCm38
MGSCv37964,564,513 - 64,564,698UniSTSGRCm37
Celera961,947,136 - 61,947,321UniSTS
Cytogenetic Map9CUniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000004892   ⟹   ENSMUSP00000004892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,624,235 - 64,645,034 (-)Ensembl
GRCm38.p6 Ensembl964,716,953 - 64,737,752 (-)Ensembl
Ensembl Acc Id: ENSMUST00000165083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,633,973 - 64,643,793 (-)Ensembl
GRCm38.p6 Ensembl964,726,691 - 64,736,511 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,624,052 - 64,633,735 (-)Ensembl
GRCm38.p6 Ensembl964,716,770 - 64,726,453 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167569   ⟹   ENSMUSP00000125755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,623,785 - 64,645,024 (-)Ensembl
GRCm38.p6 Ensembl964,716,503 - 64,737,742 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168366   ⟹   ENSMUSP00000128150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,623,988 - 64,633,992 (-)Ensembl
GRCm38.p6 Ensembl964,716,706 - 64,726,710 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169058   ⟹   ENSMUSP00000129729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,624,225 - 64,644,905 (-)Ensembl
GRCm38.p6 Ensembl964,716,943 - 64,737,623 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171100   ⟹   ENSMUSP00000127968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,624,185 - 64,645,012 (-)Ensembl
GRCm38.p6 Ensembl964,716,903 - 64,737,730 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172298   ⟹   ENSMUSP00000129163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,622,581 - 64,645,040 (-)Ensembl
GRCm38.p6 Ensembl964,715,299 - 64,737,758 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl964,623,887 - 64,633,002 (-)Ensembl
GRCm38.p6 Ensembl964,716,605 - 64,725,720 (-)Ensembl
RefSeq Acc Id: NM_017382   ⟹   NP_059078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39964,622,582 - 64,645,038 (-)NCBI
GRCm38964,715,300 - 64,737,756 (-)ENTREZGENE
MGSCv37964,563,107 - 64,585,563 (-)RGD
Celera961,945,730 - 61,968,176 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_059078   ⟸   NM_017382
- UniProtKB: Q3V1Z6 (UniProtKB/Swiss-Prot),   P62492 (UniProtKB/Swiss-Prot),   Q0PD45 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000129163   ⟸   ENSMUST00000172298
Ensembl Acc Id: ENSMUSP00000127968   ⟸   ENSMUST00000171100
Ensembl Acc Id: ENSMUSP00000129729   ⟸   ENSMUST00000169058
Ensembl Acc Id: ENSMUSP00000128150   ⟸   ENSMUST00000168366
Ensembl Acc Id: ENSMUSP00000125755   ⟸   ENSMUST00000167569
Ensembl Acc Id: ENSMUSP00000004892   ⟸   ENSMUST00000004892

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62492-F1-model_v2 AlphaFold P62492 1-216 view protein structure

Promoters
RGD ID:6845011
Promoter ID:MM_KWN:57744
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_017382,   NM_017382_RAB11A
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36964,585,319 - 64,585,819 (-)MPROMDB
RGD ID:8669956
Promoter ID:EPDNEW_M13008
Type:initiation region
Name:Rab11a_1
Description:Mus musculus RAB11A, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38964,737,725 - 64,737,785EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858202 AgrOrtholog
Ensembl Genes ENSMUSG00000004771 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004892.7 UniProtKB/TrEMBL
  ENSMUST00000167569.8 UniProtKB/TrEMBL
  ENSMUST00000168366.2 UniProtKB/TrEMBL
  ENSMUST00000169058.8 UniProtKB/TrEMBL
  ENSMUST00000171100.2 UniProtKB/TrEMBL
  ENSMUST00000172298 ENTREZGENE
  ENSMUST00000172298.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_GTPases_membrane_traffic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53869 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1858202 ENTREZGENE
NCBI Gene 53869 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab11a PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PZB2_MOUSE UniProtKB/TrEMBL
  E9Q3P9_MOUSE UniProtKB/TrEMBL
  E9Q6B3_MOUSE UniProtKB/TrEMBL
  F6R2Z5_MOUSE UniProtKB/TrEMBL
  F8WGS1_MOUSE UniProtKB/TrEMBL
  P62492 ENTREZGENE
  P97345_MOUSE UniProtKB/TrEMBL
  Q0PD45 ENTREZGENE, UniProtKB/TrEMBL
  Q3V1Z6 ENTREZGENE
  RB11A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P24410 UniProtKB/Swiss-Prot
  Q3V1Z6 UniProtKB/Swiss-Prot
  Q9JLX1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-30 Rab11a  RAB11A, member RAS oncogene family    RAB11a, member RAS oncogene family  Symbol and/or name change 5135510 APPROVED