Tmem150a (transmembrane protein 150A) - Rat Genome Database

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Gene: Tmem150a (transmembrane protein 150A) Mus musculus
Analyze
Symbol: Tmem150a
Name: transmembrane protein 150A
RGD ID: 732337
MGI Page MGI
Description: Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in liver lobe. Orthologous to human TMEM150A (transmembrane protein 150A); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BC014685; fasting-inducible integral membrane protein TM6P1; MGC25977; MGC37802; Tmem150; transmembrane protein 150
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,332,466 - 72,336,745 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,332,430 - 72,336,745 (+)Ensembl
GRCm38672,355,483 - 72,359,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,355,447 - 72,359,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,305,477 - 72,309,756 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,284,992 - 72,289,271 (+)NCBImm8
Celera674,445,748 - 74,450,205 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. MGD data from the GO Consortium
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:12477932   PMID:14610273   PMID:15489334   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22531781  


Genomics

Comparative Map Data
Tmem150a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,332,466 - 72,336,745 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,332,430 - 72,336,745 (+)Ensembl
GRCm38672,355,483 - 72,359,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,355,447 - 72,359,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,305,477 - 72,309,756 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,284,992 - 72,289,271 (+)NCBImm8
Celera674,445,748 - 74,450,205 (+)NCBICelera
Cytogenetic Map6C1NCBI
TMEM150A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,598,547 - 85,603,196 (-)EnsemblGRCh38hg38GRCh38
GRCh38285,598,547 - 85,602,698 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,825,670 - 85,829,821 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,679,182 - 85,683,332 (-)NCBINCBI36hg18NCBI36
Celera285,653,954 - 85,658,106 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,722,809 - 85,726,961 (-)NCBIHuRef
CHM1_1285,755,476 - 85,759,628 (-)NCBICHM1_1
Tmem150a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,410,271 - 104,414,630 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4104,410,516 - 104,429,349 (+)Ensembl
Rnor_6.04100,217,986 - 100,222,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,218,661 - 100,222,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,988,765 - 164,992,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,661,174 - 105,664,643 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,905,654 - 105,909,123 (+)NCBI
Celera493,565,164 - 93,568,633 (+)NCBICelera
Cytogenetic Map4q31NCBI
Tmem150a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,903,065 - 1,907,046 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,903,065 - 1,907,046 (+)NCBIChiLan1.0ChiLan1.0
TMEM150A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,201,662 - 87,206,637 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,201,662 - 87,206,632 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,651,252 - 85,655,440 (-)NCBIMhudiblu_PPA_v0panPan3
TMEM150A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,479,501 - 39,483,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,479,562 - 39,483,425 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,150,873 - 39,155,172 (+)NCBI
ROS_Cfam_1.01740,226,132 - 40,230,431 (+)NCBI
UMICH_Zoey_3.11739,355,661 - 39,359,960 (+)NCBI
UNSW_CanFamBas_1.01739,427,713 - 39,432,012 (+)NCBI
UU_Cfam_GSD_1.01739,827,295 - 39,831,594 (+)NCBI
Tmem150a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,184,427 - 79,187,970 (-)NCBI
SpeTri2.0NW_0049367121,670,485 - 1,674,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM150A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,166,897 - 59,171,126 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,166,845 - 59,171,125 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,227,927 - 62,232,203 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM150A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,554,924 - 21,559,072 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,554,966 - 21,561,379 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604590,909,759 - 90,913,927 (-)NCBIVero_WHO_p1.0
Tmem150a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,537,447 - 17,541,842 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
UniSTS:235470  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,359,049 - 72,359,135UniSTSGRCm38
MGSCv37672,309,043 - 72,309,129UniSTSGRCm37
Celera674,449,491 - 74,449,577UniSTS
Cytogenetic Map6C1UniSTS
RH126149  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,359,733 - 72,359,958UniSTSGRCm38
MGSCv37672,309,727 - 72,309,952UniSTSGRCm37
Celera674,450,176 - 74,450,401UniSTS
Cytogenetic Map6C1UniSTS
Whitehead/MRC_RH6719.46UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:559
Count of miRNA genes:260
Interacting mature miRNAs:306
Transcripts:ENSMUST00000069695, ENSMUST00000132243
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000069695   ⟹   ENSMUSP00000063977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,332,430 - 72,336,745 (+)Ensembl
GRCm38.p6 Ensembl672,355,447 - 72,359,762 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132243   ⟹   ENSMUSP00000138445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,332,430 - 72,336,745 (+)Ensembl
GRCm38.p6 Ensembl672,355,447 - 72,359,762 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206064   ⟹   ENSMUSP00000146268
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,332,457 - 72,335,384 (+)Ensembl
GRCm38.p6 Ensembl672,355,474 - 72,358,401 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206531   ⟹   ENSMUSP00000145673
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,333,209 - 72,335,735 (+)Ensembl
GRCm38.p6 Ensembl672,356,226 - 72,358,752 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206821
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,333,112 - 72,336,284 (+)Ensembl
GRCm38.p6 Ensembl672,356,129 - 72,359,301 (+)Ensembl
RefSeq Acc Id: NM_144916   ⟹   NP_659165
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,332,466 - 72,336,745 (+)NCBI
GRCm38672,355,483 - 72,359,762 (+)ENTREZGENE
MGSCv37672,305,477 - 72,309,756 (+)RGD
Celera674,445,748 - 74,450,205 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_659165   ⟸   NM_144916
- UniProtKB: Q91WN2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000146268   ⟸   ENSMUST00000206064
RefSeq Acc Id: ENSMUSP00000145673   ⟸   ENSMUST00000206531
RefSeq Acc Id: ENSMUSP00000138445   ⟸   ENSMUST00000132243
RefSeq Acc Id: ENSMUSP00000063977   ⟸   ENSMUST00000069695

Promoters
RGD ID:6840125
Promoter ID:MM_KWN:46453
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000056625,   OTTMUST00000056626
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,305,176 - 72,305,902 (+)MPROMDB
RGD ID:6848054
Promoter ID:MM_ACW:41600
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:TMEM150.DSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,307,896 - 72,309,317 (+)MPROMDB
RGD ID:6890010
Promoter ID:EPDNEW_M8456
Type:multiple initiation site
Name:Tmem150a_1
Description:Mus musculus transmembrane protein 150A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,355,474 - 72,355,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385244 AgrOrtholog
Ensembl Genes ENSMUSG00000055912 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063977 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138445 UniProtKB/TrEMBL
  ENSMUSP00000145673 UniProtKB/TrEMBL
  ENSMUSP00000146268 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069695 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000132243 UniProtKB/TrEMBL
  ENSMUST00000206064 UniProtKB/TrEMBL
  ENSMUST00000206531 UniProtKB/TrEMBL
InterPro Frag1/DRAM/Sfk1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM150A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232086 UniProtKB/Swiss-Prot
MGD MGI:2385244 ENTREZGENE
NCBI Gene 232086 ENTREZGENE
PANTHER PTHR21324:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Frag1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem150a PhenoGen
UniProt A0A0U1RNR4_MOUSE UniProtKB/TrEMBL
  A0A0U1RQ67_MOUSE UniProtKB/TrEMBL
  Q91WN2 ENTREZGENE
  S4R204_MOUSE UniProtKB/TrEMBL
  T150A_MOUSE UniProtKB/Swiss-Prot