Serpind1 (serine (or cysteine) peptidase inhibitor, clade D, member 1) - Rat Genome Database

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Gene: Serpind1 (serine (or cysteine) peptidase inhibitor, clade D, member 1) Mus musculus
Analyze
Symbol: Serpind1
Name: serine (or cysteine) peptidase inhibitor, clade D, member 1
RGD ID: 732321
MGI Page MGI
Description: Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within blood coagulation. Predicted to be active in extracellular space. Is expressed in liver. Human ortholog(s) of this gene implicated in heparin cofactor II deficiency. Orthologous to human SERPIND1 (serpin family D member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA985900; AI303446; HC; HC-II; Hcf2; HCII; heparin cofactor 2; heparin cofactor II; MGC107662; protease inhibitor leuserpin-2; serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1; serpin D1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,149,235 - 17,161,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,149,235 - 17,161,439 (+)EnsemblGRCm39 Ensembl
GRCm381617,331,371 - 17,343,574 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,331,371 - 17,343,575 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,331,464 - 17,343,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,244,978 - 17,257,135 (+)NCBIMGSCv36mm8
Celera1617,904,289 - 17,916,527 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
5-fluorouracil  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
benzo[a]pyrene  (EXP,ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
dermatan sulfate  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
diethyl maleate  (EXP)
dioxygen  (ISO)
doxorubicin  (ISO)
fenthion  (EXP)
flavonoids  (ISO)
fluoranthene  (ISO)
flutamide  (ISO)
furan  (ISO)
gestodene  (ISO)
glyphosate  (EXP)
hydroquinone O-beta-D-glucopyranoside  (ISO)
methidathion  (EXP)
methyltestosterone  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (ISO)
nimesulide  (ISO)
nitrofen  (ISO)
O-methyleugenol  (ISO)
p-toluidine  (ISO)
paracetamol  (EXP,ISO)
perfluorodecanoic acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
perfluoroundecanoic acid  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
succimer  (EXP)
tauroursodeoxycholic acid  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Chromosomal mapping of Tmp (Emp1), Xmp (Emp2), and Ymp (Emp3), genes encoding membrane proteins related to Pmp22. Ben-Porath I, etal., Genomics 1998 May 1;49(3):443-7.
2. Molecular and cellular basis for type I heparin cofactor II deficiency (heparin cofactor II Awaji). Kondo S, etal., Blood. 1996 Feb 1;87(3):1006-12.
3. A novel missense mutation in the human plasmin inhibitor (alpha2-antiplasmin) gene associated with a bleeding tendency. Lind B and Thorsen S, Br J Haematol. 1999 Nov;107(2):317-22.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Plasma levels of heparin cofactor II (HCII) and thrombin-HCII complex in patients with disseminated intravascular coagulation. Noda A, etal., Clin Appl Thromb Hemost. 2002 Jul;8(3):265-71.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Inhibitors of fibrinolysis are elevated in atherosclerotic plaque. Robbie LA, etal., Arterioscler Thromb Vasc Biol. 1996 Apr;16(4):539-45.
Additional References at PubMed
PMID:7908224   PMID:9405660   PMID:9565648   PMID:9740669   PMID:10095113   PMID:10337614   PMID:10963672   PMID:11414760   PMID:11805133   PMID:12477932   PMID:12819125   PMID:15315969  
PMID:15489334   PMID:16141072   PMID:16497528   PMID:16944957   PMID:17549254   PMID:17878401   PMID:18000606   PMID:18281504   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22904320  
PMID:22985540   PMID:23656734   PMID:24172014   PMID:28502917   PMID:30870413  


Genomics

Comparative Map Data
Serpind1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,149,235 - 17,161,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,149,235 - 17,161,439 (+)EnsemblGRCm39 Ensembl
GRCm381617,331,371 - 17,343,574 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,331,371 - 17,343,575 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,331,464 - 17,343,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,244,978 - 17,257,135 (+)NCBIMGSCv36mm8
Celera1617,904,289 - 17,916,527 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.74NCBI
SERPIND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,774,113 - 20,787,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,774,113 - 20,787,720 (+)EnsemblGRCh38hg38GRCh38
GRCh372221,128,401 - 21,142,008 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,458,383 - 19,472,008 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,452,940 - 19,466,562NCBI
Celera224,619,743 - 4,633,367 (+)NCBICelera
Cytogenetic Map22q11.21ENTREZGENE
HuRef224,396,258 - 4,409,872 (+)NCBIHuRef
CHM1_12221,128,573 - 21,142,203 (+)NCBICHM1_1
T2T-CHM13v2.02221,182,821 - 21,196,428 (+)NCBIT2T-CHM13v2.0
Serpind1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,168,753 - 97,179,830 (-)NCBIGRCr8
mRatBN7.21183,664,517 - 83,675,593 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,664,518 - 83,675,519 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,392,269 - 92,403,338 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,053,419 - 85,064,488 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,107,025 - 84,118,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,913,814 - 87,924,880 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,913,806 - 87,924,816 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,969,513 - 90,980,577 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,666,714 - 85,677,716 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,707,310 - 85,718,313 (-)NCBI
Celera1182,428,108 - 82,439,110 (-)NCBICelera
Cytogenetic Map11q23NCBI
Serpind1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,525,411 - 19,538,384 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,525,411 - 19,537,986 (-)NCBIChiLan1.0ChiLan1.0
SERPIND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,479,547 - 30,494,177 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,028,430 - 33,043,063 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,997,480 - 3,011,469 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,488,733 - 19,502,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,488,733 - 19,502,380 (+)Ensemblpanpan1.1panPan2
SERPIND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,686,074 - 30,697,437 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,686,663 - 30,693,848 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,644,440 - 30,655,802 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02632,092,332 - 32,104,026 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2632,092,321 - 32,100,437 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12630,140,268 - 30,151,742 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,765,126 - 29,776,487 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,854,649 - 30,866,010 (-)NCBIUU_Cfam_GSD_1.0
Serpind1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,443,481 - 140,455,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366192,298,893 - 2,310,716 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366192,298,745 - 2,310,740 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPIND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,427,115 - 50,436,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,427,121 - 50,436,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,875,835 - 53,885,198 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERPIND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,709,896 - 4,724,620 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,715,806 - 4,726,111 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660852,274,595 - 2,288,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Serpind1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945915,789 - 932,515 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945919,639 - 932,515 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Serpind1
195 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:464
Count of miRNA genes:181
Interacting mature miRNAs:210
Transcripts:ENSMUST00000023450, ENSMUST00000161034
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
15092082Igly9_mIgG glycosylation 9, GP17b (mouse)161477522320103513Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse

Markers in Region
AI303446  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381617,343,273 - 17,343,392UniSTSGRCm38
MGSCv371617,343,366 - 17,343,485UniSTSGRCm37
Celera1617,916,228 - 17,916,347UniSTS
Cytogenetic Map16A3UniSTS
cM Map169.5UniSTS
Whitehead/MRC_RH16134.17UniSTS
AA985900  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381617,343,373 - 17,343,468UniSTSGRCm38
MGSCv371617,343,466 - 17,343,561UniSTSGRCm37
Celera1617,916,328 - 17,916,423UniSTS
Cytogenetic Map16A3UniSTS
cM Map169.5UniSTS
Whitehead/MRC_RH16139.67UniSTS
MHAa22f12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381617,336,644 - 17,336,839UniSTSGRCm38
MGSCv371617,336,737 - 17,336,932UniSTSGRCm37
Celera1617,909,558 - 17,909,753UniSTS
Cytogenetic Map16A3UniSTS
cM Map169.5UniSTS
Whitehead_YAC16 UniSTS
U07425  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381617,343,208 - 17,343,387UniSTSGRCm38
MGSCv371617,343,301 - 17,343,480UniSTSGRCm37
Celera1617,916,163 - 17,916,342UniSTS
Cytogenetic Map16A3UniSTS
cM Map169.5UniSTS
Whitehead_YAC16 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001331047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA253694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC110573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF097643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI195091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI196697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI529123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI529613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY770136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA478051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB949626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ067925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ238471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U07425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023450   ⟹   ENSMUSP00000023450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1617,149,235 - 17,161,439 (+)Ensembl
GRCm38.p6 Ensembl1617,331,371 - 17,343,575 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231884   ⟹   ENSMUSP00000156303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1617,149,247 - 17,161,438 (+)Ensembl
GRCm38.p6 Ensembl1617,331,383 - 17,343,574 (+)Ensembl
RefSeq Acc Id: NM_001331047   ⟹   NP_001317976
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391617,149,235 - 17,161,438 (+)NCBI
GRCm381617,331,371 - 17,343,574 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008223   ⟹   NP_032249
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391617,149,235 - 17,161,438 (+)NCBI
GRCm381617,331,371 - 17,343,574 (+)NCBI
MGSCv371617,331,464 - 17,343,665 (+)RGD
Celera1617,904,289 - 17,916,527 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032249   ⟸   NM_008223
- Peptide Label: precursor
- UniProtKB: P49182 (UniProtKB/Swiss-Prot),   Q5FW62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001317976   ⟸   NM_001331047
- Peptide Label: precursor
- UniProtKB: P49182 (UniProtKB/Swiss-Prot),   Q5FW62 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000156303   ⟸   ENSMUST00000231884
RefSeq Acc Id: ENSMUSP00000023450   ⟸   ENSMUST00000023450
Protein Domains
SERPIN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49182-F1-model_v2 AlphaFold P49182 1-478 view protein structure

Promoters
RGD ID:6827500
Promoter ID:MM_KWN:20302
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:OTTMUST00000076423,   OTTMUST00000076424
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361617,330,626 - 17,331,447 (+)MPROMDB
RGD ID:8685602
Promoter ID:EPDNEW_M20832
Type:initiation region
Name:Serpind1_1
Description:Mus musculus serine peptidase inhibitor, clade D, member 1 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20833  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381617,331,415 - 17,331,475EPDNEW
RGD ID:8685604
Promoter ID:EPDNEW_M20833
Type:single initiation site
Name:Serpind1_2
Description:Mus musculus serine peptidase inhibitor, clade D, member 1 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20832  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381617,334,167 - 17,334,227EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96051 AgrOrtholog
Ensembl Genes ENSMUSG00000022766 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000023450 ENTREZGENE
  ENSMUST00000023450.15 UniProtKB/Swiss-Prot
  ENSMUST00000231884 ENTREZGENE
  ENSMUST00000231884.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.39.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HCII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15160 UniProtKB/Swiss-Prot
MGD MGI:96051 ENTREZGENE
NCBI Gene 15160 ENTREZGENE
PANTHER HEPARIN COFACTOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11461 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Serpin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Serpind1 PhenoGen
PRINTS LEUSERPINII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SERPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SERPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt HEP2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q5FW62 ENTREZGENE, UniProtKB/TrEMBL