Cntn1 (contactin 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cntn1 (contactin 1) Mus musculus
Analyze
Symbol: Cntn1
Name: contactin 1
RGD ID: 732232
MGI Page MGI
Description: Enables carbohydrate binding activity. Acts upstream of or within several processes, including nervous system development; positive regulation of neuron projection development; and positive regulation of sodium ion transport. Is anchored component of postsynaptic membrane. Is anchored component of presynaptic membrane. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Used to study Compton-North congenital myopathy. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy. Orthologous to human CNTN1 (contactin 1); PARTICIPATES IN Notch signaling pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,4-diaminotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW495098; CN; CNTN; contactin-1; F3ca; F3cam; neural cell surface protein F3; u; usl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391591,949,034 - 92,239,848 (+)NCBIGRCm39mm39
GRCm39 Ensembl1591,949,046 - 92,239,848 (+)Ensembl
GRCm381592,051,152 - 92,341,967 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1592,051,165 - 92,341,967 (+)EnsemblGRCm38mm10GRCm38
MGSCv371591,881,596 - 92,172,398 (+)NCBIGRCm37mm9NCBIm37
MGSCv361591,956,372 - 92,168,291 (+)NCBImm8
Celera1594,177,246 - 94,486,845 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1546.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1729438   PMID:2474555   PMID:7533563   PMID:7601440   PMID:7605908   PMID:7609617   PMID:7678967   PMID:8164510   PMID:8703126   PMID:8889548   PMID:9562962   PMID:10349636  
PMID:10719795   PMID:11042159   PMID:11076861   PMID:11395001   PMID:11687277   PMID:11807022   PMID:11839269   PMID:11839274   PMID:12441289   PMID:12477932   PMID:12700241   PMID:12972410  
PMID:14516675   PMID:14567914   PMID:14667450   PMID:14681479   PMID:14691545   PMID:15146195   PMID:15147765   PMID:15489334   PMID:15601927   PMID:15972963   PMID:16029194   PMID:16141072  
PMID:16141073   PMID:16367788   PMID:16602821   PMID:16701205   PMID:17131403   PMID:17560618   PMID:17634366   PMID:17722031   PMID:18354028   PMID:18585357   PMID:18614564   PMID:19026398  
PMID:19075012   PMID:19372728   PMID:19458237   PMID:19521566   PMID:19524556   PMID:20133774   PMID:20133873   PMID:21205796   PMID:21267068   PMID:21414899   PMID:21677750   PMID:21745462  
PMID:22242131   PMID:22360968   PMID:22579730   PMID:22789544   PMID:23303943   PMID:23939883   PMID:24385581   PMID:24559674   PMID:24952961   PMID:25659859   PMID:25820347   PMID:25826454  
PMID:25917818   PMID:26395479   PMID:26721881   PMID:26969129   PMID:27507650   PMID:28634551   PMID:28671696   PMID:29021239   PMID:29343636   PMID:30068389   PMID:30562941   PMID:30629639  
PMID:31112734   PMID:31260032   PMID:31328333   PMID:31641127   PMID:32325033   PMID:33932339  


Genomics

Comparative Map Data
Cntn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391591,949,034 - 92,239,848 (+)NCBIGRCm39mm39
GRCm39 Ensembl1591,949,046 - 92,239,848 (+)Ensembl
GRCm381592,051,152 - 92,341,967 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1592,051,165 - 92,341,967 (+)EnsemblGRCm38mm10GRCm38
MGSCv371591,881,596 - 92,172,398 (+)NCBIGRCm37mm9NCBIm37
MGSCv361591,956,372 - 92,168,291 (+)NCBImm8
Celera1594,177,246 - 94,486,845 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1546.39NCBI
CNTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1240,692,439 - 41,072,415 (+)EnsemblGRCh38hg38GRCh38
GRCh381240,692,429 - 41,072,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371241,086,241 - 41,466,217 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361239,372,625 - 39,750,361 (+)NCBINCBI36hg18NCBI36
Build 341239,372,624 - 39,750,361NCBI
Celera1239,889,695 - 40,267,406 (+)NCBI
Cytogenetic Map12q12NCBI
HuRef1238,112,937 - 38,492,512 (+)NCBIHuRef
CHM1_11241,051,536 - 41,431,091 (+)NCBICHM1_1
Cntn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27123,263,146 - 123,560,896 (+)NCBI
Rnor_6.0 Ensembl7133,400,485 - 133,586,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07133,290,606 - 133,588,314 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07132,976,416 - 133,272,747 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47130,658,836 - 130,845,071 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17130,735,272 - 130,921,508 (+)NCBI
Celera7119,777,077 - 119,962,153 (+)NCBICelera
Cytogenetic Map7q35NCBI
Cntn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955500245,896 - 540,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955500154,704 - 540,546 (+)NCBIChiLan1.0ChiLan1.0
CNTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11248,492,558 - 48,877,396 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1248,492,564 - 48,670,126 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01247,630,295 - 48,014,766 (-)NCBIMhudiblu_PPA_v0panPan3
CNTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12712,655,021 - 13,005,536 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2712,657,287 - 12,920,315 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2733,445,834 - 33,709,949 (+)NCBI
ROS_Cfam_1.02712,856,273 - 13,206,411 (-)NCBI
UMICH_Zoey_3.12712,671,345 - 12,901,312 (-)NCBI
UNSW_CanFamBas_1.02712,704,418 - 13,054,458 (-)NCBI
UU_Cfam_GSD_1.02733,541,381 - 33,890,677 (+)NCBI
Cntn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494573,184,782 - 73,458,579 (-)NCBI
SpeTri2.0NW_0049366078,430 - 291,964 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl572,168,511 - 72,495,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1572,168,496 - 72,495,454 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2575,140,748 - 75,389,289 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11136,950,020 - 37,332,058 (+)NCBI
ChlSab1.1 Ensembl1137,167,079 - 37,333,314 (+)Ensembl
Vero_WHO_p1.0NW_023666037209,407,722 - 209,806,565 (-)NCBI
Cntn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624917292,404 - 752,017 (+)NCBI

Position Markers
AW495098  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381592,341,594 - 92,341,685UniSTSGRCm38
MGSCv371592,172,025 - 92,172,116UniSTSGRCm37
Celera1594,486,472 - 94,486,563UniSTS
Cytogenetic Map15FUniSTS
cM Map1555.1UniSTS
Whitehead/MRC_RH15836.36UniSTS
X14943  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381592,339,888 - 92,340,057UniSTSGRCm38
MGSCv371592,170,319 - 92,170,488UniSTSGRCm37
Celera1594,484,766 - 94,484,935UniSTS
Cytogenetic Map15FUniSTS
cM Map1555.1UniSTS
Whitehead_YAC15 UniSTS
Cntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371592,170,326 - 92,170,477UniSTSGRCm37
Celera1594,484,773 - 94,484,924UniSTS
Cytogenetic Map15FUniSTS
cM Map1555.1UniSTS
cM Map1555.1UniSTS
D15Roc7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381592,059,491 - 92,059,838UniSTSGRCm38
MGSCv371591,889,922 - 91,890,269UniSTSGRCm37
Celera1594,185,564 - 94,185,911UniSTS
Cytogenetic Map15FUniSTS
cM Map1555.1UniSTS
Cntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381592,339,895 - 92,340,046UniSTSGRCm38
MGSCv371592,170,326 - 92,170,477UniSTSGRCm37
Celera1594,484,773 - 94,484,924UniSTS
Cytogenetic Map15FUniSTS
cM Map1555.1UniSTS
Cntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15FUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156170000095700000Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156327970297279794Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156492762598927745Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156545237799456827Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1495
Count of miRNA genes:422
Interacting mature miRNAs:514
Transcripts:ENSMUST00000000109, ENSMUST00000068378, ENSMUST00000141187, ENSMUST00000169825
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC100736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF325200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF325706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY512913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY299031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ132669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X14943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000109   ⟹   ENSMUSP00000000109
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1592,128,188 - 92,341,953 (+)Ensembl
RefSeq Acc Id: ENSMUST00000068378   ⟹   ENSMUSP00000067842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1592,161,357 - 92,340,114 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141187
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1592,051,165 - 92,249,451 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169825   ⟹   ENSMUSP00000133063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1592,051,165 - 92,341,967 (+)Ensembl
RefSeq Acc Id: NM_001159647   ⟹   NP_001153119
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391592,059,238 - 92,239,848 (+)NCBI
GRCm381592,161,357 - 92,341,967 (+)NCBI
MGSCv371591,881,596 - 92,172,398 (+)RGD
Celera1594,177,246 - 94,486,845 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159648   ⟹   NP_001153120
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391591,949,046 - 92,239,848 (+)NCBI
GRCm381592,051,165 - 92,341,967 (+)NCBI
MGSCv371591,881,596 - 92,172,398 (+)RGD
Celera1594,177,246 - 94,486,845 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358051   ⟹   NP_001344980
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391591,949,046 - 92,239,848 (+)NCBI
GRCm381592,051,165 - 92,341,967 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007727   ⟹   NP_031753
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391592,026,009 - 92,239,848 (+)NCBI
GRCm381592,128,128 - 92,341,967 (+)NCBI
MGSCv371591,881,596 - 92,172,398 (+)RGD
Celera1594,177,246 - 94,486,845 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520383   ⟹   XP_006520446
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391591,949,034 - 92,187,981 (+)NCBI
GRCm381592,051,152 - 92,290,100 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316422   ⟹   XP_017171911
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391591,949,066 - 92,239,834 (+)NCBI
GRCm381592,051,203 - 92,341,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316423   ⟹   XP_017171912
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391592,058,562 - 92,187,367 (+)NCBI
GRCm381592,160,681 - 92,285,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159110   ⟹   XP_036015003
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391591,949,100 - 92,239,834 (+)NCBI
RefSeq Acc Id: XM_036159111   ⟹   XP_036015004
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391592,009,463 - 92,239,834 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_031753   ⟸   NM_007727
- Peptide Label: precursor
- UniProtKB: P12960 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153120   ⟸   NM_001159648
- Peptide Label: precursor
- UniProtKB: P12960 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153119   ⟸   NM_001159647
- Peptide Label: precursor
- UniProtKB: P12960 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520446   ⟸   XM_006520383
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017171911   ⟸   XM_017316422
- Peptide Label: isoform X1
- UniProtKB: P12960 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017171912   ⟸   XM_017316423
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001344980   ⟸   NM_001358051
- Peptide Label: precursor
RefSeq Acc Id: ENSMUSP00000067842   ⟸   ENSMUST00000068378
RefSeq Acc Id: ENSMUSP00000000109   ⟸   ENSMUST00000000109
RefSeq Acc Id: ENSMUSP00000133063   ⟸   ENSMUST00000169825
RefSeq Acc Id: XP_036015003   ⟸   XM_036159110
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036015004   ⟸   XM_036159111
- Peptide Label: isoform X1
Promoters
RGD ID:8684786
Promoter ID:EPDNEW_M20424
Type:initiation region
Name:Cntn1_1
Description:Mus musculus contactin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20425  EPDNEW_M20426  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381592,051,219 - 92,051,279EPDNEW
RGD ID:8684790
Promoter ID:EPDNEW_M20425
Type:single initiation site
Name:Cntn1_2
Description:Mus musculus contactin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20424  EPDNEW_M20426  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381592,160,926 - 92,160,986EPDNEW
RGD ID:8684792
Promoter ID:EPDNEW_M20426
Type:initiation region
Name:Cntn1_3
Description:Mus musculus contactin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20424  EPDNEW_M20425  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381592,161,284 - 92,161,344EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105980 AgrOrtholog
Ensembl Genes ENSMUSG00000055022 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000000109 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000067842 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133063 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000109 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000068378 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000169825 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro Contactin-1 UniProtKB/Swiss-Prot
  FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Immunoglobulin UniProtKB/Swiss-Prot
KEGG Report mmu:12805 UniProtKB/Swiss-Prot
MGD MGI:105980 ENTREZGENE
NCBI Gene 12805 ENTREZGENE
PANTHER PTHR44170:SF10 UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  I-set UniProtKB/Swiss-Prot
  PF00047 UniProtKB/Swiss-Prot
PhenoGen Cntn1 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt CNTN1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UYF2_MOUSE UniProtKB/TrEMBL
  Q6R5G9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6NXV7 UniProtKB/Swiss-Prot
  Q8BR42 UniProtKB/Swiss-Prot
  Q8C6A0 UniProtKB/Swiss-Prot