Cib1 (calcium and integrin binding 1 (calmyrin)) - Rat Genome Database

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Gene: Cib1 (calcium and integrin binding 1 (calmyrin)) Mus musculus
Analyze
Symbol: Cib1
Name: calcium and integrin binding 1 (calmyrin)
RGD ID: 732229
MGI Page MGI
Description: Enables protein-membrane adaptor activity and transmembrane transporter binding activity. Involved in several processes, including negative regulation of megakaryocyte differentiation; regulation of intracellular signal transduction; and regulation of protein phosphorylation. Located in cytoplasm and sarcolemma. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system; and liver and biliary system. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human CIB1 (calcium and integrin binding 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium and integrin binding, protein kinase interacting protein; calcium and integrin-binding protein 1; calmyrin; CIB; Cibkip; DNA-PKcs-interacting protein; K; kinase-interacting protein; Kip; Prkdcip; protein kinase, DNA activated, catalytic polypeptide interacting protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,876,904 - 79,882,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,876,895 - 79,882,561 (-)EnsemblGRCm39 Ensembl
GRCm38780,227,156 - 80,232,805 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,227,147 - 80,232,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37787,372,046 - 87,377,502 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,100,673 - 80,106,129 (-)NCBIMGSCv36mm8
Celera777,628,499 - 77,633,950 (-)NCBICelera
Cytogenetic Map7D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (IEA)
apoptotic process  (ISO,ISS)
cell adhesion  (IEA)
cell differentiation  (IEA)
cell division  (IEA)
cellular response to DNA damage stimulus  (ISO,ISS)
cellular response to growth factor stimulus  (IBA,IDA)
cellular response to nerve growth factor stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
cytoplasmic microtubule organization  (ISO)
endomitotic cell cycle  (ISO)
negative regulation of apoptotic process  (IMP,ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of megakaryocyte differentiation  (IMP)
negative regulation of microtubule depolymerization  (ISO)
negative regulation of neuron projection development  (ISO)
negative regulation of protein kinase B signaling  (IMP)
negative regulation of protein phosphorylation  (IMP)
platelet formation  (IMP)
positive regulation of calcineurin-NFAT signaling cascade  (IBA,IMP,ISO)
positive regulation of catalytic activity  (IMP)
positive regulation of cell adhesion mediated by integrin  (ISO)
positive regulation of cell growth  (IMP)
positive regulation of cell migration  (IMP)
positive regulation of cell migration involved in sprouting angiogenesis  (IMP)
positive regulation of cell population proliferation  (IMP)
positive regulation of cell-matrix adhesion  (IMP)
positive regulation of ERK1 and ERK2 cascade  (IMP)
positive regulation of male germ cell proliferation  (IMP)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of protein localization to plasma membrane  (IBA,IMP,ISO)
positive regulation of protein phosphorylation  (IMP)
positive regulation of protein serine/threonine kinase activity  (IMP)
positive regulation of protein targeting to membrane  (ISO)
positive regulation of substrate adhesion-dependent cell spreading  (ISO)
regulation of cell division  (ISO)
regulation of cell population proliferation  (ISO)
response to ischemia  (IDA)
spermatid development  (IMP)
spermatogenesis  (IEA)
thrombopoietin-mediated signaling pathway  (IMP)

Cellular Component
axon  (IBA,ISO)
cell periphery  (ISO)
cell projection  (IEA)
centrosome  (ISO)
cytoplasm  (IBA,IDA,IMP,ISO)
cytoskeleton  (IEA)
dendrite  (ISO)
endoplasmic reticulum  (ISO,ISS)
filopodium tip  (ISO)
growth cone  (ISO)
lamellipodium  (ISO)
membrane  (IDA,ISO)
neuron projection  (ISO)
neuronal cell body  (IBA,ISO)
nucleoplasm  (ISO,ISS)
nucleus  (IBA,ISO)
perinuclear region of cytoplasm  (ISO)
plasma membrane  (ISO)
sarcolemma  (IBA,IDA,ISO)

References

References - curated
# Reference Title Reference Citation
1. The Alzheimer disease-related calcium-binding protein Calmyrin is present in human forebrain with an altered distribution in Alzheimer's as compared to normal ageing brains. Bernstein HG, etal., Neuropathol Appl Neurobiol. 2005 Jun;31(3):314-24.
2. Expression of genes encoding the calcium signalosome in cellular and transgenic models of Huntington's disease. Czeredys M, etal., Front Mol Neurosci. 2013 Nov 25;6:42. doi: 10.3389/fnmol.2013.00042. eCollection 2013.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9852683   PMID:10051332   PMID:10349636   PMID:10366599   PMID:10826701   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12011095   PMID:12477932   PMID:12651910   PMID:14610273  
PMID:15475008   PMID:15489334   PMID:15685448   PMID:15747579   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16982698   PMID:17975111   PMID:18799693   PMID:19691476   PMID:20639889  
PMID:20652029   PMID:21264284   PMID:21873635   PMID:22128142   PMID:22779914   PMID:24194600   PMID:28542214   PMID:28663585   PMID:28939911   PMID:29255404   PMID:29653104   PMID:31530712  
PMID:32307772   PMID:32917726  


Genomics

Comparative Map Data
Cib1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,876,904 - 79,882,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,876,895 - 79,882,561 (-)EnsemblGRCm39 Ensembl
GRCm38780,227,156 - 80,232,805 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,227,147 - 80,232,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37787,372,046 - 87,377,502 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,100,673 - 80,106,129 (-)NCBIMGSCv36mm8
Celera777,628,499 - 77,633,950 (-)NCBICelera
Cytogenetic Map7D2NCBI
CIB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381590,229,975 - 90,265,759 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1590,229,975 - 90,234,047 (-)EnsemblGRCh38hg38GRCh38
GRCh371590,773,207 - 90,808,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361588,574,481 - 88,578,168 (-)NCBINCBI36Build 36hg18NCBI36
Build 341588,574,481 - 88,578,164NCBI
Celera1567,177,856 - 67,181,658 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,885,466 - 66,920,950 (-)NCBIHuRef
CHM1_11590,615,325 - 90,650,739 (-)NCBICHM1_1
T2T-CHM13v2.01587,985,982 - 88,021,749 (-)NCBIT2T-CHM13v2.0
Cib1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21134,178,331 - 134,183,895 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,178,331 - 134,213,423 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1142,087,063 - 142,092,596 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01149,256,463 - 149,261,996 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01142,174,501 - 142,180,032 (-)NCBIRnor_WKY
Rnor_6.01142,014,962 - 142,020,461 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,014,958 - 142,020,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,969,357 - 142,974,856 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41136,031,865 - 136,045,153 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11136,110,270 - 136,123,559 (-)NCBI
Celera1126,238,471 - 126,243,970 (-)NCBICelera
Cytogenetic Map1q31NCBI
Cib1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,102,632 - 15,106,372 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,102,632 - 15,106,372 (+)NCBIChiLan1.0ChiLan1.0
CIB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11588,121,309 - 88,125,120 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01568,919,377 - 68,923,213 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CIB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,184,713 - 53,209,195 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,184,714 - 53,188,224 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,822,517 - 55,847,781 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,600,749 - 53,626,017 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,600,750 - 53,625,109 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,120,852 - 53,146,101 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,331,988 - 53,357,228 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,672,463 - 53,697,717 (-)NCBIUU_Cfam_GSD_1.0
Cib1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,366,977 - 130,370,657 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,960,036 - 15,968,094 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648315,963,863 - 15,967,458 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,794,836 - 55,798,590 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,794,834 - 55,798,666 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,656,933 - 60,659,823 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,777,202 - 8,781,027 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,777,436 - 8,781,030 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605937,949,545 - 37,953,393 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cib1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476817,209,639 - 17,213,114 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476817,209,639 - 17,212,996 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:840
Count of miRNA genes:399
Interacting mature miRNAs:453
Transcripts:ENSMUST00000065163, ENSMUST00000071457, ENSMUST00000123279, ENSMUST00000131402, ENSMUST00000144295
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
13513916Heal53_mwound healing/ regeneration 53 (mouse)77945491380630796Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB006463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB017361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF173010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB843350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP770454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF104297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000065163   ⟹   ENSMUSP00000070901
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,876,895 - 79,882,561 (-)Ensembl
GRCm38.p6 Ensembl780,227,147 - 80,232,813 (-)Ensembl
RefSeq Acc Id: ENSMUST00000071457   ⟹   ENSMUSP00000071401
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,876,907 - 79,882,372 (-)Ensembl
GRCm38.p6 Ensembl780,227,159 - 80,232,624 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123279   ⟹   ENSMUSP00000118926
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,877,128 - 79,882,243 (-)Ensembl
GRCm38.p6 Ensembl780,227,380 - 80,232,495 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131402
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,877,906 - 79,882,345 (-)Ensembl
GRCm38.p6 Ensembl780,228,158 - 80,232,597 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,881,199 - 79,882,479 (-)Ensembl
GRCm38.p6 Ensembl780,231,451 - 80,232,731 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205996   ⟹   ENSMUSP00000146153
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,877,811 - 79,882,345 (-)Ensembl
GRCm38.p6 Ensembl780,228,063 - 80,232,597 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206084   ⟹   ENSMUSP00000145961
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,876,907 - 79,882,313 (-)Ensembl
GRCm38.p6 Ensembl780,227,159 - 80,232,565 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206211
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,877,580 - 79,880,108 (-)Ensembl
GRCm38.p6 Ensembl780,227,832 - 80,230,360 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206618
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,881,314 - 79,882,329 (-)Ensembl
GRCm38.p6 Ensembl780,231,566 - 80,232,581 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206802   ⟹   ENSMUSP00000145564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,878,146 - 79,882,553 (-)Ensembl
GRCm38.p6 Ensembl780,228,398 - 80,232,805 (-)Ensembl
RefSeq Acc Id: NM_001291275   ⟹   NP_001278204
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,876,904 - 79,882,553 (-)NCBI
GRCm38780,227,156 - 80,232,805 (-)NCBI
Celera777,628,495 - 77,634,139 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291276   ⟹   NP_001278205
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,876,904 - 79,882,553 (-)NCBI
GRCm38780,227,156 - 80,232,805 (-)NCBI
Celera777,628,495 - 77,634,139 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011870   ⟹   NP_036000
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,876,904 - 79,882,553 (-)NCBI
GRCm38780,227,156 - 80,232,805 (-)NCBI
MGSCv37787,372,046 - 87,377,502 (-)RGD
Celera777,628,495 - 77,634,139 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011250861   ⟹   XP_011249163
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,876,904 - 79,882,527 (-)NCBI
GRCm38780,227,156 - 80,232,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242553   ⟹   XP_030098413
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,876,904 - 79,882,500 (-)NCBI
GRCm38780,227,156 - 80,232,774 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036000   ⟸   NM_011870
- Peptide Label: isoform 1
- UniProtKB: Q3TN80 (UniProtKB/Swiss-Prot),   Q9Z0F4 (UniProtKB/Swiss-Prot),   A0A8C6HGG9 (UniProtKB/TrEMBL),   A0A6P5PZW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278205   ⟸   NM_001291276
- Peptide Label: isoform 3
- UniProtKB: Q9Z0F4 (UniProtKB/Swiss-Prot),   Q8C2K4 (UniProtKB/TrEMBL),   A0A8C6HGI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278204   ⟸   NM_001291275
- Peptide Label: isoform 2
- UniProtKB: Q9Z0F4 (UniProtKB/Swiss-Prot),   A0A0U1RPF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011249163   ⟸   XM_011250861
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030098413   ⟸   XM_030242553
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000071401   ⟸   ENSMUST00000071457
RefSeq Acc Id: ENSMUSP00000070901   ⟸   ENSMUST00000065163
RefSeq Acc Id: ENSMUSP00000145961   ⟸   ENSMUST00000206084
RefSeq Acc Id: ENSMUSP00000145564   ⟸   ENSMUST00000206802
RefSeq Acc Id: ENSMUSP00000146153   ⟸   ENSMUST00000205996
RefSeq Acc Id: ENSMUSP00000118926   ⟸   ENSMUST00000123279
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0F4-F1-model_v2 AlphaFold Q9Z0F4 1-191 view protein structure

Promoters
RGD ID:8664547
Promoter ID:EPDNEW_M10305
Type:initiation region
Name:Cib1_1
Description:Mus musculus calcium and integrin binding 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10306  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38780,232,581 - 80,232,641EPDNEW
RGD ID:8664549
Promoter ID:EPDNEW_M10306
Type:initiation region
Name:Cib1_2
Description:Mus musculus calcium and integrin binding 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10305  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38780,232,786 - 80,232,846EPDNEW
RGD ID:6840848
Promoter ID:MM_KWN:51273
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000055107,   OTTMUST00000055108,   OTTMUST00000055109,   OTTMUST00000055110,   OTTMUST00000055111,   OTTMUST00000055113
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36787,377,086 - 87,377,932 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1344418 AgrOrtholog
Ensembl Genes ENSMUSG00000030538 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000070901 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000071401 ENTREZGENE
  ENSMUSP00000071401.6 UniProtKB/TrEMBL
  ENSMUSP00000118926 ENTREZGENE
  ENSMUSP00000118926.3 UniProtKB/TrEMBL
  ENSMUSP00000145564.2 UniProtKB/TrEMBL
  ENSMUSP00000145961 ENTREZGENE
  ENSMUSP00000145961.2 UniProtKB/TrEMBL
  ENSMUSP00000146153.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065163 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000071457 ENTREZGENE
  ENSMUST00000071457.12 UniProtKB/TrEMBL
  ENSMUST00000123279 ENTREZGENE
  ENSMUST00000123279.8 UniProtKB/TrEMBL
  ENSMUST00000205996.2 UniProtKB/TrEMBL
  ENSMUST00000206084 ENTREZGENE
  ENSMUST00000206084.2 UniProtKB/TrEMBL
  ENSMUST00000206802.2 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:23991 UniProtKB/Swiss-Prot
MGD MGI:1344418 ENTREZGENE
NCBI Gene 23991 ENTREZGENE
Pfam EF-hand_6 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cib1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNH3_MOUSE UniProtKB/TrEMBL
  A0A0U1RPF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RPW6_MOUSE UniProtKB/TrEMBL
  A0A6P5PZW5 ENTREZGENE
  A0A8C6HGG9 ENTREZGENE
  A0A8C6HGI1 ENTREZGENE
  CIB1_MOUSE UniProtKB/Swiss-Prot
  D3YY46_MOUSE UniProtKB/TrEMBL
  Q3TN80 ENTREZGENE
  Q8C2K4 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z0F4 ENTREZGENE
UniProt Secondary Q3TN80 UniProtKB/Swiss-Prot