Abca2 (ATP-binding cassette, sub-family A (ABC1), member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Abca2 (ATP-binding cassette, sub-family A (ABC1), member 2) Mus musculus
Analyze
Symbol: Abca2
Name: ATP-binding cassette, sub-family A (ABC1), member 2
RGD ID: 732201
MGI Page MGI
Description: Predicted to have ATP binding activity; ATPase activity; and endopeptidase regulator activity. Involved in several processes, including central nervous system myelin formation; regulation of cellular protein localization; and sphingolipid metabolic process. Localizes to lysosomal membrane. Is expressed in brain; retina; and spinal cord. Orthologous to human ABCA2 (ATP binding cassette subfamily A member 2); INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Abc; Abc2; AI413825; ATP-binding cassette 2; ATP-binding cassette sub-family A member 2; ATP-binding cassette transporter 2; D2H0S1474; D2H0S1474E; mKIAA1062
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,318,611 - 25,338,556 (+)NCBIGRCm39mm39
GRCm39 Ensembl225,318,715 - 25,338,552 (+)Ensembl
GRCm38225,428,599 - 25,448,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,428,703 - 25,448,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,284,194 - 25,304,059 (+)NCBIGRCm37mm9NCBIm37
MGSCv36225,250,779 - 25,270,208 (+)NCBImm8
Celera225,156,185 - 25,176,102 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular sphingolipid homeostasis  (ISO)
central nervous system myelin formation  (IMP,ISO)
ceramide translocation  (ISO)
cholesterol homeostasis  (ISO)
cholesterol metabolic process  (ISO)
ganglioside metabolic process  (IMP)
glycosphingolipid metabolic process  (IMP)
lipid transport  (IBA)
locomotory behavior  (IMP)
negative regulation of cholesterol efflux  (ISO)
negative regulation of cholesterol esterification  (ISO)
negative regulation of intracellular cholesterol transport  (ISO)
negative regulation of low-density lipoprotein receptor activity  (IDA,ISO)
negative regulation of phospholipid biosynthetic process  (ISO)
negative regulation of receptor-mediated endocytosis involved in cholesterol transport  (ISO)
negative regulation of sphingolipid biosynthetic process  (ISO)
positive regulation of amyloid precursor protein biosynthetic process  (ISO)
positive regulation of amyloid precursor protein catabolic process  (ISO)
positive regulation of amyloid-beta formation  (ISO)
positive regulation of low-density lipoprotein particle receptor catabolic process  (ISO)
regulation of cholesterol biosynthetic process  (ISO)
regulation of cholesterol esterification  (ISO)
regulation of intracellular cholesterol transport  (IMP,ISO)
regulation of post-translational protein modification  (ISO)
regulation of protein glycosylation  (IMP)
regulation of protein localization to cell periphery  (IMP)
regulation of protein localization to cell surface  (IMP)
regulation of transcription by RNA polymerase II  (ISO)
response to cholesterol  (ISO)
response to steroid hormone  (ISO)
sphingomyelin metabolic process  (IMP)
sphingosine biosynthetic process  (ISO)
transmembrane transport  (IEA)

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1282354   PMID:7766993   PMID:7774911   PMID:8799160   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11157071   PMID:11217851   PMID:12446833   PMID:12466851   PMID:14681479  
PMID:15226823   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17060448   PMID:17240058   PMID:17488728   PMID:21041019   PMID:21267068   PMID:21677750   PMID:21788586   PMID:21810484  
PMID:21873635   PMID:22086926   PMID:22748276   PMID:22860215   PMID:22898081   PMID:24201375   PMID:24952961   PMID:26510981  


Genomics

Comparative Map Data
Abca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,318,611 - 25,338,556 (+)NCBIGRCm39mm39
GRCm39 Ensembl225,318,715 - 25,338,552 (+)Ensembl
GRCm38225,428,599 - 25,448,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,428,703 - 25,448,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,284,194 - 25,304,059 (+)NCBIGRCm37mm9NCBIm37
MGSCv36225,250,779 - 25,270,208 (+)NCBImm8
Celera225,156,185 - 25,176,102 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.25NCBI
ABCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9137,007,234 - 137,028,922 (-)EnsemblGRCh38hg38GRCh38
GRCh389137,007,234 - 137,028,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379139,901,686 - 139,923,374 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,021,507 - 139,043,195 (-)NCBINCBI36hg18NCBI36
Build 349137,177,522 - 137,199,211NCBI
Celera9110,414,121 - 110,431,191 (-)NCBI
Cytogenetic Map9q34.3NCBI
HuRef9109,360,841 - 109,382,226 (-)NCBIHuRef
CHM1_19140,050,436 - 140,072,137 (-)NCBICHM1_1
Abca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,244,515 - 8,264,545 (+)NCBI
Rnor_6.0 Ensembl32,648,885 - 2,668,809 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.032,648,787 - 2,668,770 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.032,630,237 - 2,650,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,595,423 - 3,615,328 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,595,422 - 3,615,327 (+)NCBI
Celera33,069,743 - 3,089,646 (+)NCBICelera
Cytogenetic Map3p13NCBI
Abca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,033,771 - 5,051,200 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,035,879 - 5,051,140 (-)NCBIChiLan1.0ChiLan1.0
ABCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19137,039,264 - 137,057,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,036,696 - 137,057,776 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09108,067,633 - 108,089,742 (-)NCBIMhudiblu_PPA_v0panPan3
ABCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,610,906 - 48,630,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,613,996 - 48,629,857 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,824,500 - 47,844,585 (+)NCBI
ROS_Cfam_1.0949,488,905 - 49,509,018 (+)NCBI
UMICH_Zoey_3.1948,265,133 - 48,285,232 (+)NCBI
UNSW_CanFamBas_1.0948,563,850 - 48,583,927 (+)NCBI
UU_Cfam_GSD_1.0948,611,199 - 48,631,304 (+)NCBI
Abca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,433,062 - 202,454,661 (-)NCBI
SpeTri2.0NW_004936669922,978 - 941,996 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA2
(Sus scrofa - pig)
No map positions available.
ABCA2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,161,340 - 1,183,807 (+)NCBI
ChlSab1.1 Ensembl121,162,865 - 1,183,113 (+)Ensembl
Vero_WHO_p1.0NW_0236660584,118,329 - 4,134,713 (-)NCBI
Abca2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760880,216 - 898,753 (+)NCBI

Position Markers
AI413825  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,448,207 - 25,448,384UniSTSGRCm38
MGSCv37225,303,727 - 25,303,904UniSTSGRCm37
Celera225,175,770 - 25,175,947UniSTS
Cytogenetic Map2A2-BUniSTS
Whitehead/MRC_RH2429.35UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126524778Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323390328289138Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967188027132630Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21432455548324701Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2123971355239859Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22123971355239859Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22379913357799257Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22470000055000000Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22478910333633160Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22478910333633160Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22541803957081799Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1617
Count of miRNA genes:637
Interacting mature miRNAs:776
Transcripts:ENSMUST00000102919, ENSMUST00000125520, ENSMUST00000141065, ENSMUST00000143075, ENSMUST00000144560, ENSMUST00000149385, ENSMUST00000150550
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001368624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK129274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ126415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ263864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000102919   ⟹   ENSMUSP00000099983
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,428,703 - 25,448,540 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125520
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,445,162 - 25,446,865 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141065
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,445,843 - 25,446,476 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143075
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,442,948 - 25,443,813 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,445,822 - 25,446,542 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,445,665 - 25,447,067 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150550
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,441,308 - 25,442,917 (+)Ensembl
RefSeq Acc Id: NM_001368624   ⟹   NP_001355553
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,611 - 25,338,552 (+)NCBI
GRCm38225,428,599 - 25,448,540 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007379   ⟹   NP_031405
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,611 - 25,338,552 (+)NCBI
GRCm38225,428,599 - 25,448,540 (+)NCBI
MGSCv37225,284,194 - 25,304,059 (+)RGD
Celera225,156,185 - 25,176,102 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497609   ⟹   XP_006497672
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,855 - 25,338,556 (+)NCBI
GRCm38225,428,842 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497610   ⟹   XP_006497673
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,855 - 25,338,550 (+)NCBI
GRCm38225,428,842 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497611   ⟹   XP_006497674
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,855 - 25,338,556 (+)NCBI
GRCm38225,428,842 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497614   ⟹   XP_006497677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,703 - 25,338,550 (+)NCBI
GRCm38225,428,708 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497615   ⟹   XP_006497678
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,855 - 25,338,550 (+)NCBI
GRCm38225,428,842 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497616   ⟹   XP_006497679
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,855 - 25,338,550 (+)NCBI
GRCm38225,428,842 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246714   ⟹   XP_030102574
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,630 - 25,338,550 (+)NCBI
GRCm38225,428,618 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246727   ⟹   XP_030102587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,718 - 25,338,550 (+)NCBI
GRCm38225,428,699 - 25,448,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157597   ⟹   XP_036013490
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,855 - 25,338,550 (+)NCBI
RefSeq Acc Id: XM_036157601   ⟹   XP_036013494
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,318,690 - 25,338,550 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_031405   ⟸   NM_007379
- Peptide Label: isoform 1
- UniProtKB: A2AJ26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497677   ⟸   XM_006497614
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006497672   ⟸   XM_006497609
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006497674   ⟸   XM_006497611
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006497673   ⟸   XM_006497610
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006497678   ⟸   XM_006497615
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006497679   ⟸   XM_006497616
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: NP_001355553   ⟸   NM_001368624
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030102574   ⟸   XM_030246714
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030102587   ⟸   XM_030246727
- Peptide Label: isoform X9
RefSeq Acc Id: ENSMUSP00000099983   ⟸   ENSMUST00000102919
RefSeq Acc Id: XP_036013494   ⟸   XM_036157601
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036013490   ⟸   XM_036157597
- Peptide Label: isoform X4
Protein Domains
ABC transporter

Promoters
RGD ID:6830664
Promoter ID:MM_KWN:28151
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung
Transcripts:ENSMUST00000095124,   ENSMUST00000114269,   OTTMUST00000028850
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,284,031 - 25,284,627 (+)MPROMDB
RGD ID:6847619
Promoter ID:MM_ACW:27747
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ABCA2.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,286,281 - 25,286,781 (+)MPROMDB
RGD ID:6830663
Promoter ID:MM_KWN:28152
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000028851
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,296,231 - 25,296,731 (+)MPROMDB
RGD ID:6830665
Promoter ID:MM_KWN:28153
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000028852
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,298,581 - 25,299,081 (+)MPROMDB
RGD ID:6830666
Promoter ID:MM_KWN:28154
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:OTTMUST00000028853,   OTTMUST00000028854,   OTTMUST00000028855,   OTTMUST00000028856
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,300,531 - 25,301,517 (+)MPROMDB
RGD ID:6847620
Promoter ID:MM_ACW:27748
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ABCA2.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,302,581 - 25,303,782 (+)MPROMDB
RGD ID:6876598
Promoter ID:EPDNEW_M1750
Type:initiation region
Name:Abca2_1
Description:Mus musculus ATP-binding cassette, sub-family A , member 2 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,428,673 - 25,428,733EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99606 AgrOrtholog
Ensembl Genes ENSMUSG00000026944 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000099983 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000102919 ENTREZGENE, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCA2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99606 ENTREZGENE
NCBI Gene 11305 ENTREZGENE
PANTHER PTHR19229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19229:SF225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Abca2 PhenoGen
PROSITE ABC_TRANSPORTER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AJ26 ENTREZGENE, UniProtKB/TrEMBL
  ABCA2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TMR1_MOUSE UniProtKB/TrEMBL
  Q3TZM0_MOUSE UniProtKB/TrEMBL
  Q6ZPZ4_MOUSE UniProtKB/TrEMBL