Stat1 (signal transducer and activator of transcription 1) - Rat Genome Database
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Gene: Stat1 (signal transducer and activator of transcription 1) Mus musculus
Symbol: Stat1
Name: signal transducer and activator of transcription 1
RGD ID: 732185
Description: Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system gland; and skeletal musculature. Used to study breast cancer and severe acute respiratory syndrome. Human ortholog(s) of this gene implicated in breast carcinoma; immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Orthologous to human STAT1 (signal transducer and activator of transcription 1); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; fibroblast growth factor signaling pathway; INTERACTS WITH (+)-alpha-viniferin; (-)-Arctigenin; (R)-mevalonic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2010005J02Rik; AA408197
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm39152,158,588 - 52,201,024 (+)NCBIGRCm39mm39
GRCm39 Ensembl152,158,599 - 52,201,024 (+)Ensembl
GRCm38152,119,438 - 52,161,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,119,440 - 52,161,865 (+)EnsemblGRCm38mm10GRCm38
MGSCv37152,176,282 - 52,218,707 (+)NCBIGRCm37mm9NCBIm37
MGSCv36152,064,002 - 52,105,508 (+)NCBImm8
Celera152,657,880 - 52,700,334 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-viniferin  (EXP)
(+)-catechin  (ISO)
(+)-schisandrin B  (ISO)
(+)-taxifolin  (ISO)
(-)-Arctigenin  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-lipoic acid  (ISO)
(R)-mevalonic acid  (EXP,ISO)
(S)-colchicine  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-benzoquinone  (ISO)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dichloroindophenol  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
2-nitrofluorene  (ISO)
2-trans,6-trans,10-trans-geranylgeranyl diphosphate  (EXP)
22-Hydroxycholesterol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (ISO)
5,6,7-trimethoxyflavone  (EXP)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (ISO)
5-aza-2'-deoxycytidine  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrolein  (ISO)
actinomycin D  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (ISO)
alpha-pinene  (ISO)
amantadine  (ISO)
aminoguanidine  (ISO)
ammonium chloride  (ISO)
amorolfine  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antigen  (EXP)
antirheumatic drug  (ISO)
apocynin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP,ISO)
azathioprine  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
butenafine  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP)
Cannabinol  (EXP)
capsaicin  (EXP,ISO)
capsazepine  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carvedilol  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cholesterol  (EXP)
choline  (EXP)
chromium(6+)  (EXP,ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
coniferyl aldehyde  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
curcumin  (EXP,ISO)
cyclophosphamide  (EXP)
cyclosporin A  (EXP,ISO)
cytochalasin D  (ISO)
D-glucose  (ISO)
daidzein  (EXP)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (EXP,ISO)
diclofenac  (EXP,ISO)
diethyl malate  (EXP)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP,ISO)
dimemorfan  (ISO)
dimethylarsinous acid  (ISO)
dinitrogen oxide  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
eugenol  (ISO)
flavonoids  (ISO)
flutamide  (EXP,ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
geraniol  (ISO)
glucose  (ISO)
glutathione  (EXP,ISO)
gold atom  (EXP)
gold(0)  (EXP)
herbimycin  (ISO)
hesperetin  (EXP)
hexachlorobenzene  (ISO)
hydrazine  (EXP)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
ICI D1694  (ISO)
indometacin  (ISO)
Interferon beta-1b  (ISO)
iopamidol  (ISO)
irinotecan  (ISO)
iron(2+) sulfate (anhydrous)  (ISO)
itraconazole  (ISO)
kaempferol  (EXP)
ketoconazole  (ISO)
L-arginine  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lead(0)  (EXP)
lead(2+)  (EXP)
lipoic acid  (ISO)
lipopolysaccharide  (EXP,ISO)
Luliconazole  (ISO)
lycorine  (EXP)
Mecamylamine  (ISO)
melatonin  (EXP)
mercury dichloride  (ISO)
metam  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
Methylthiouracil  (ISO)
N'-Nitrosonornicotine  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (EXP,ISO)
nicotine  (ISO)
nitric oxide  (EXP)
nitrofurantoin  (ISO)
o-anisidine  (ISO)
ochratoxin A  (EXP)
oridonin  (ISO)
oroxylin A  (EXP)
ozone  (EXP,ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (EXP)
PF-956980  (ISO)
phenethyl isothiocyanate  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenylarsine oxide  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
phosphatidic acid  (EXP)
pipoxolan  (EXP)
pirinixic acid  (EXP)
pitavastatin  (EXP)
pitavastatin(1-)  (EXP)
platycodin D  (ISO)
poly(I:C)  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pravastatin  (EXP)
protein kinase inhibitor  (ISO)
quercetin  (EXP,ISO)
raloxifene  (ISO)
resiniferatoxin  (EXP)
resveratrol  (EXP,ISO)
Ro 41-5253  (ISO)
rotenone  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (EXP)
simvastatin  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium aurothiomalate  (ISO)
Soman  (ISO)
stattic  (EXP)
sulfates  (ISO)
T-2 toxin  (EXP,ISO)
tamibarotene  (ISO)
tamoxifen  (EXP,ISO)
taurocholic acid  (ISO)
terbinafine  (ISO)
tert-butyl hydroperoxide  (EXP,ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetrahydropalmatine  (ISO)
thioacetamide  (ISO)
thiophenes  (ISO)
titanium dioxide  (EXP)
tofacitinib  (EXP,ISO)
Triptolide  (ISO)
troglitazone  (EXP)
ursodeoxycholic acid  (ISO)
valsartan  (ISO)
vancomycin  (EXP)
verteporfin  (EXP)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vinyl carbamate  (EXP)
vitamin E  (ISO)
withaferin A  (EXP)
zidovudine  (ISO)
zinc atom  (ISO)
zinc oxide  (ISO)
zinc protoporphyrin  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of cysteine-type endopeptidase activity involved in apoptotic process  (IMP)
blood circulation  (ISO)
cellular response to cytokine stimulus  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to interferon-beta  (ISO)
cellular response to interferon-gamma  (ISO)
cellular response to lipopolysaccharide  (IMP)
cellular response to organic cyclic compound  (ISO)
cytokine-mediated signaling pathway  (IBA,IDA)
defense response  (IBA)
defense response to virus  (IMP,ISO)
endothelial cell migration  (ISO)
interferon-gamma-mediated signaling pathway  (IMP,ISO)
interleukin-27-mediated signaling pathway  (ISO)
lipopolysaccharide-mediated signaling pathway  (IDA)
macrophage derived foam cell differentiation  (ISO)
negative regulation by virus of viral protein levels in host cell  (ISO)
negative regulation of angiogenesis  (ISO)
negative regulation of endothelial cell proliferation  (ISO)
negative regulation of I-kappaB kinase/NF-kappaB signaling  (ISO)
negative regulation of macrophage fusion  (IMP)
positive regulation of cell population proliferation  (ISO)
positive regulation of defense response to virus by host  (ISO)
positive regulation of erythrocyte differentiation  (ISO)
positive regulation of interferon-alpha production  (ISO)
positive regulation of nitric-oxide synthase biosynthetic process  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription, DNA-templated  (ISO)
receptor signaling pathway via JAK-STAT  (IBA,ISO)
regulation of cell population proliferation  (IBA)
regulation of transcription by RNA polymerase II  (IBA,ISO)
regulation of transcription, DNA-templated  (IEA)
renal tubule development  (ISO)
response to bacterium  (IDA)
response to cAMP  (ISO)
response to cytokine  (ISO)
response to drug  (ISO)
response to exogenous dsRNA  (IDA)
response to hydrogen peroxide  (ISO)
response to interferon-beta  (ISO)
response to lipopolysaccharide  (IDA)
response to mechanical stimulus  (ISO)
response to nutrient  (ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (IBA,ISO)
response to type I interferon  (IDA)
signal transduction  (IEA)
transcription, DNA-templated  (IMP)
tumor necrosis factor-mediated signaling pathway  (ISO)
type I interferon signaling pathway  (IBA,IMP,ISO)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal CD4-positive T cell differentiation  (IEA)
abnormal CD8-positive, alpha-beta T cell differentiation  (IEA)
abnormal CD8-positive, naive alpha-beta T cell number  (IEA)
abnormal cell cycle  (IAGP)
abnormal cell physiology  (IAGP)
abnormal colon morphology  (IAGP)
abnormal common myeloid progenitor cell morphology  (IAGP)
abnormal cornea morphology  (IAGP)
abnormal freezing behavior  (IEA)
abnormal gait  (IEA)
abnormal inflammatory response  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal leukocyte physiology  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal MHC II cell surface expression on macrophages  (IAGP)
abnormal nitric oxide homeostasis  (IAGP)
abnormal NK cell physiology  (IAGP)
abnormal osteoblast differentiation  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal redox activity  (IAGP)
abnormal response to infection  (IEA)
abnormal retinal inner nuclear layer morphology  (IEA)
abnormal susceptibility to infection induced morbidity/mortality  (IAGP)
abnormal T cell activation  (IEA)
abnormal T cell differentiation  (IEA)
abnormal T-helper 2 physiology  (IEA)
abnormal tibia morphology  (IAGP)
ataxia  (IAGP)
bronchiolitis  (IAGP)
colitis  (IAGP)
decreased B cell number  (IEA)
decreased B-1 B cell number  (IEA)
decreased body size  (IAGP)
decreased bone mineral density  (IEA)
decreased CD8-positive, alpha-beta T cell number  (IEA)
decreased CD8-positive, naive alpha-beta T cell number  (IEA)
decreased circulating interferon-gamma level  (IAGP)
decreased cytotoxic T cell cytolysis  (IEA)
decreased hepatocyte apoptosis  (IAGP)
decreased interferon-gamma secretion  (IEA)
decreased interleukin-1 beta secretion  (IAGP)
decreased level of surface class I molecules  (IAGP)
decreased lymphocyte cell number  (IEA)
decreased mean corpuscular volume  (IEA)
decreased NK cell degranulation  (IEA)
decreased NK cell number  (IEA)
decreased sensitivity to induced cell death  (IAGP)
decreased single-positive T cell number  (IEA)
decreased susceptibility to endotoxin shock  (IAGP)
decreased susceptibility to neuronal excitotoxicity  (IAGP)
decreased tumor latency  (IAGP)
enlarged liver  (IAGP)
enlarged lymph nodes  (IEA)
impaired natural killer cell mediated cytotoxicity  (IAGP)
impaired righting response  (IEA)
increased activated T cell number  (IAGP)
increased basophil cell number  (IEA)
increased bone mass  (IAGP)
increased bone resorption  (IAGP)
increased cardiomyocyte apoptosis  (IAGP)
increased CD4-positive, alpha beta T cell number  (IAGP)
increased circulating interferon-gamma level  (IAGP)
increased circulating interleukin-12b level  (IAGP)
increased compact bone thickness  (IAGP)
increased compact bone volume  (IAGP)
increased effector memory CD4-positive, alpha-beta T cell number  (IEA)
increased effector memory CD8-positive, alpha-beta T cell number  (IEA)
increased gastrointestinal tumor incidence  (IAGP)
increased IgG level  (IEA)
increased interferon-gamma secretion  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased lymphocyte cell number  (IEA)
increased macrophage nitric oxide production  (IAGP)
increased mammary adenocarcinoma incidence  (IAGP)
increased myocardial infarction size  (IAGP)
increased neutrophil cell number  (IEA)
increased NK T cell number  (IAGP)
increased osteoclast cell number  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased susceptibility to bacterial infection induced morbidity/mortality  (IAGP)
increased susceptibility to Coronaviridae infection  (IAGP)
increased susceptibility to Coronaviridae infection induced morbidity/mortality  (IAGP)
increased susceptibility to Herpesvirales infection  (IAGP)
increased susceptibility to Riboviria infection  (IAGP)
increased susceptibility to Togaviridae infection  (IAGP)
increased T cell number  (IEA)
increased trabecular bone volume  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
internal hemorrhage  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
liver inflammation  (IAGP)
lung hemorrhage  (IAGP)
lung inflammation  (IAGP)
multifocal hepatic necrosis  (IAGP)
no abnormal phenotype detected  (IAGP)
peritoneal inflammation  (IAGP)
pleuritis  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
pulmonary edema  (IAGP)
pulmonary necrosis  (IAGP)
small intestine hemorrhage  (IAGP)
thymus atrophy  (IAGP)
tremors  (IAGP)
tumor regression  (IAGP)
ulcerated paws  (IAGP)

References - curated
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4. Buess M, etal., Genome Biol. 2007;8(9):R191.
5. Dupuis S, etal., Science. 2001 Jul 13;293(5528):300-3.
6. El-Hashemite N and Kwiatkowski DJ, Am J Respir Cell Mol Biol. 2005 Sep;33(3):227-30. Epub 2005 Jun 30.
7. Fan XM, etal., Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi. 2006 Jul;22(4):487-9, 492.
8. Goody RJ, etal., J Neurovirol. 2007 Aug;13(4):373-83.
9. Jia Y, etal., PLoS One. 2011;6(10):e27006. Epub 2011 Oct 31.
10. Jones SA, etal., J Clin Invest. 2011 Sep 1;121(9):3375-83. doi: 10.1172/JCI57158. Epub 2011 Sep 1.
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12. McCormick J, etal., FASEB J. 2006 Oct;20(12):2115-7. Epub 2006 Aug 25.
13. MGD and Homologene mouse data transfer
14. MGD data from the GO Consortium
16. Mihara M, etal., Clin Sci (Lond). 2012 Feb;122(4):143-59. doi: 10.1042/CS20110340.
17. Murray PJ J Immunol. 2007 Mar 1;178(5):2623-9.
18. Na YJ, etal., J Neurochem. 2007 Oct;103(2):637-49.
19. OMIM Disease Annotation Pipeline
20. Pipeline to import KEGG annotations from KEGG into RGD
21. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
22. RGD automated import pipeline
23. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
24. RGD automated import pipeline for gene-chemical interactions
25. Sabat R, etal., Cytokine Growth Factor Rev. 2010 Oct;21(5):331-44. doi: 10.1016/j.cytogfr.2010.09.002. Epub 2010 Nov 5.
26. Schroeder MD, etal., Mol Cell Endocrinol. 2001 Apr 25;175(1-2):173-83.
27. Shahrara S, etal., Arthritis Rheum. 2003 Dec;48(12):3568-83.
28. Timofeeva OA, etal., Oncogene. 2006 Dec 7;25(58):7555-64. Epub 2006 Jun 26.
29. West DA, etal., Neuroscience. 2004;127(2):333-9.
30. Widschwendter A, etal., Clin Cancer Res. 2002 Oct;8(10):3065-74.
31. Yang N, etal., Nephrol Dial Transplant. 2008 Jan;23(1):91-100. Epub 2007 Jul 31.
32. Yao YM, etal., Zhonghua Wai Ke Za Zhi. 2006 Jul 1;44(13):916-20.
33. Zhao JB, etal., Neurosci Lett. 2011 Jul 8;498(2):147-52. Epub 2011 May 10.
Additional References at PubMed
PMID:7490523   PMID:7515712   PMID:7545930   PMID:7567467   PMID:7579387   PMID:8140422   PMID:8530075   PMID:8593242   PMID:8608597   PMID:8608598   PMID:8626752   PMID:8631837  
PMID:8675207   PMID:8805627   PMID:8833906   PMID:9022056   PMID:9069288   PMID:9092506   PMID:9119818   PMID:9126479   PMID:9229117   PMID:9287210   PMID:9342212   PMID:9548487  
PMID:9638363   PMID:9695817   PMID:9828143   PMID:9846495   PMID:9887329   PMID:10200816   PMID:10349636   PMID:10364154   PMID:10364426   PMID:10510345   PMID:10526573   PMID:10562320  
PMID:10629051   PMID:10640742   PMID:10692450   PMID:10754318   PMID:10781830   PMID:10817963   PMID:10851046   PMID:10851049   PMID:10851050   PMID:10851062   PMID:10865997   PMID:10867663  
PMID:10899912   PMID:10946258   PMID:11034357   PMID:11042159   PMID:11076861   PMID:11086033   PMID:11163195   PMID:11217851   PMID:11310846   PMID:11323675   PMID:11371356   PMID:11390995  
PMID:11493533   PMID:11544199   PMID:11554754   PMID:11579100   PMID:11881154   PMID:11884466   PMID:11884587   PMID:11932417   PMID:11971185   PMID:11972023   PMID:12006410   PMID:12006974  
PMID:12007403   PMID:12018856   PMID:12033784   PMID:12138178   PMID:12162464   PMID:12167251   PMID:12171910   PMID:12198138   PMID:12219085   PMID:12232043   PMID:12270932   PMID:12364588  
PMID:12370359   PMID:12407025   PMID:12421924   PMID:12426001   PMID:12426389   PMID:12438372   PMID:12438448   PMID:12441126   PMID:12444163   PMID:12461178   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:12526039   PMID:12551969   PMID:12624267   PMID:12634107   PMID:12671680   PMID:12679810   PMID:12686553   PMID:12727921   PMID:12730885   PMID:12811839   PMID:12816762  
PMID:12832402   PMID:12859963   PMID:12865406   PMID:12872135   PMID:12923053   PMID:12925694   PMID:12957148   PMID:12960068   PMID:14522949   PMID:14600148   PMID:14602726   PMID:14617019  
PMID:14656722   PMID:14657353   PMID:14662340   PMID:14662881   PMID:14670297   PMID:14688355   PMID:14699080   PMID:14730360   PMID:14732359   PMID:14733929   PMID:14734769   PMID:14738323  
PMID:14764699   PMID:14871928   PMID:14976252   PMID:14977926   PMID:14978477   PMID:15020428   PMID:15073186   PMID:15128825   PMID:15188379   PMID:15189833   PMID:15213094   PMID:15226272  
PMID:15238607   PMID:15240659   PMID:15240691   PMID:15240699   PMID:15246962   PMID:15322115   PMID:15356124   PMID:15356135   PMID:15452265   PMID:15477229   PMID:15485925   PMID:15491990  
PMID:15522878   PMID:15537876   PMID:15539157   PMID:15541348   PMID:15585884   PMID:15618518   PMID:15634877   PMID:15661922   PMID:15713743   PMID:15719366   PMID:15761153   PMID:15778340  
PMID:15814715   PMID:15850655   PMID:15851485   PMID:15852015   PMID:15905519   PMID:15905569   PMID:15919828   PMID:15919906   PMID:15956575   PMID:15963787   PMID:15964802   PMID:15972639  
PMID:15983048   PMID:16014513   PMID:16024814   PMID:16046307   PMID:16081786   PMID:16116224   PMID:16141072   PMID:16141073   PMID:16148142   PMID:16148148   PMID:16159623   PMID:16200070  
PMID:16210330   PMID:16210337   PMID:16251407   PMID:16254350   PMID:16260600   PMID:16260741   PMID:16284791   PMID:16301649   PMID:16315087   PMID:16365415   PMID:16388483   PMID:16424049  
PMID:16472772   PMID:16482512   PMID:16493033   PMID:16507120   PMID:16514065   PMID:16563502   PMID:16585592   PMID:16602821   PMID:16618773   PMID:16634641   PMID:16670015   PMID:16670771  
PMID:16688530   PMID:16689660   PMID:16709859   PMID:16709865   PMID:16709871   PMID:16717119   PMID:16728283   PMID:16731906   PMID:16734559   PMID:16751369   PMID:16764725   PMID:16782051  
PMID:16785492   PMID:16785566   PMID:16843267   PMID:16857984   PMID:16878149   PMID:16906167   PMID:16951379   PMID:17015705   PMID:17015727   PMID:17018853   PMID:17032168   PMID:17065231  
PMID:17078933   PMID:17082570   PMID:17114459   PMID:17121994   PMID:17133483   PMID:17170125   PMID:17182557   PMID:17200147   PMID:17218386   PMID:17227866   PMID:17229692   PMID:17234735  
PMID:17237438   PMID:17293456   PMID:17307940   PMID:17346710   PMID:17424888   PMID:17473223   PMID:17475277   PMID:17490433   PMID:17507688   PMID:17513775   PMID:17533179   PMID:17548600  
PMID:17548649   PMID:17549733   PMID:17553874   PMID:17575072   PMID:17620422   PMID:17634555   PMID:17661345   PMID:17683066   PMID:17689680   PMID:17785781   PMID:17785783   PMID:17823504  
PMID:17846149   PMID:17898865   PMID:17908914   PMID:17938255   PMID:17950290   PMID:17981810   PMID:17994023   PMID:18023015   PMID:18026101   PMID:18059273   PMID:18060035   PMID:18061568  
PMID:18083102   PMID:18096999   PMID:18156621   PMID:18158321   PMID:18178823   PMID:18209032   PMID:18211965   PMID:18227389   PMID:18250422   PMID:18268032   PMID:18274639   PMID:18287094  
PMID:18287559   PMID:18292557   PMID:18322213   PMID:18322222   PMID:18329552   PMID:18340381   PMID:18341989   PMID:18354215   PMID:18400863   PMID:18424890   PMID:18431520   PMID:18467446  
PMID:18493980   PMID:18496526   PMID:18499741   PMID:18523269   PMID:18551195   PMID:18574148   PMID:18606672   PMID:18607004   PMID:18625883   PMID:18641358   PMID:18652890   PMID:18656624  
PMID:18682602   PMID:18713987   PMID:18771758   PMID:18774582   PMID:18799693   PMID:18806225   PMID:18818378   PMID:18923003   PMID:18941537   PMID:18954557   PMID:18981230   PMID:19001470  
PMID:19009526   PMID:19018808   PMID:19075017   PMID:19109391   PMID:19164812   PMID:19185844   PMID:19201901   PMID:19224984   PMID:19230833   PMID:19231233   PMID:19246642   PMID:19272190  
PMID:19325004   PMID:19337996   PMID:19349465   PMID:19352584   PMID:19380776   PMID:19387591   PMID:19414010   PMID:19439086   PMID:19494319   PMID:19501566   PMID:19502390   PMID:19503789  
PMID:19508864   PMID:19521500   PMID:19528464   PMID:19542364   PMID:19564349   PMID:19587017   PMID:19620279   PMID:19620292   PMID:19622834   PMID:19641143   PMID:19647793   PMID:19703987  
PMID:19741297   PMID:19783024   PMID:19786532   PMID:19889125   PMID:19890039   PMID:19890042   PMID:19923465   PMID:19924240   PMID:19949064   PMID:20059953   PMID:20089923   PMID:20123960  
PMID:20123961   PMID:20190134   PMID:20211142   PMID:20217138   PMID:20299783   PMID:20347693   PMID:20348925   PMID:20372968   PMID:20386712   PMID:20407011   PMID:20412781   PMID:20427527  
PMID:20428250   PMID:20436908   PMID:20483775   PMID:20562259   PMID:20585034   PMID:20592027   PMID:20637658   PMID:20637660   PMID:20648647   PMID:20699362   PMID:20702617   PMID:20713887  
PMID:20739514   PMID:20850013   PMID:20887958   PMID:20932939   PMID:20974984   PMID:20978541   PMID:21039465   PMID:21041726   PMID:21076615   PMID:21098093   PMID:21124930   PMID:21125645  
PMID:21172865   PMID:21224412   PMID:21239708   PMID:21248711   PMID:21257966   PMID:21267068   PMID:21294722   PMID:21349431   PMID:21372127   PMID:21376308   PMID:21379341   PMID:21383241  
PMID:21447043   PMID:21536945   PMID:21551362   PMID:21553074   PMID:21572044   PMID:21606371   PMID:21624938   PMID:21633090   PMID:21636857   PMID:21670504   PMID:21674475   PMID:21677750  
PMID:21684247   PMID:21709156   PMID:21723864   PMID:21778271   PMID:21828128   PMID:21833847   PMID:21835648   PMID:21873635   PMID:21876033   PMID:21915277   PMID:21937453   PMID:21937652  
PMID:21943709   PMID:21949815   PMID:21984703   PMID:21987655   PMID:21987777   PMID:21987780   PMID:21994441   PMID:22003092   PMID:22005305   PMID:22065572   PMID:22072963   PMID:22114338  
PMID:22185785   PMID:22210911   PMID:22246627   PMID:22264274   PMID:22268122   PMID:22305621   PMID:22306691   PMID:22337873   PMID:22412192   PMID:22427680   PMID:22438254   PMID:22450807  
PMID:22454431   PMID:22467218   PMID:22474018   PMID:22479645   PMID:22496215   PMID:22510411   PMID:22536153   PMID:22560297   PMID:22561605   PMID:22562203   PMID:22649549   PMID:22713837  
PMID:22719255   PMID:22726954   PMID:22745821   PMID:22769061   PMID:22777121   PMID:22784990   PMID:22785228   PMID:22805310   PMID:22808166   PMID:22837198   PMID:22837488   PMID:22865856  
PMID:22892029   PMID:22902832   PMID:22925810   PMID:22942432   PMID:22951832   PMID:22956547   PMID:22960221   PMID:22968462   PMID:22981537   PMID:22984078   PMID:23015710   PMID:23038263  
PMID:23041519   PMID:23125412   PMID:23125414   PMID:23142821   PMID:23188796   PMID:23213481   PMID:23254377   PMID:23273843   PMID:23278812   PMID:23321674   PMID:23335749   PMID:23349024  
PMID:23352233   PMID:23376950   PMID:23392574   PMID:23401241   PMID:23407880   PMID:23435120   PMID:23440417   PMID:23447690   PMID:23467089   PMID:23479229   PMID:23486482   PMID:23527309  
PMID:23543757   PMID:23554911   PMID:23582260   PMID:23597922   PMID:23630250   PMID:23644631   PMID:23653476   PMID:23670194   PMID:23686490   PMID:23728775   PMID:23733873   PMID:23749757  
PMID:23797472   PMID:23798382   PMID:23843024   PMID:23853600   PMID:23903655   PMID:23903830   PMID:23904165   PMID:23933255   PMID:23958683   PMID:24037089   PMID:24069548   PMID:24081304  
PMID:24097101   PMID:24145513   PMID:24216477   PMID:24284630   PMID:24295829   PMID:24319264   PMID:24321405   PMID:24360797   PMID:24367096   PMID:24407239   PMID:24413774   PMID:24443556  
PMID:24449862   PMID:24464587   PMID:24466267   PMID:24467246   PMID:24489087   PMID:24489092   PMID:24489749   PMID:24501415   PMID:24503098   PMID:24519625   PMID:24598055   PMID:24619410  
PMID:24696493   PMID:24710278   PMID:24743305   PMID:24760883   PMID:24811173   PMID:24820309   PMID:24844667   PMID:24882218   PMID:24920804   PMID:24952961   PMID:24958857   PMID:24986442  
PMID:25027037   PMID:25049377   PMID:25079358   PMID:25080587   PMID:25200956   PMID:25242146   PMID:25263949   PMID:25267651   PMID:25305312   PMID:25311665   PMID:25315223   PMID:25419628  
PMID:25501630   PMID:25512607   PMID:25545325   PMID:25564224   PMID:25572843   PMID:25576519   PMID:25597995   PMID:25609618   PMID:25614966   PMID:25617378   PMID:25648899   PMID:25732191  
PMID:25738463   PMID:25774715   PMID:25797619   PMID:25807359   PMID:25870277   PMID:25908663   PMID:25918247   PMID:25953241   PMID:25959715   PMID:25990091   PMID:25992861   PMID:26006013  
PMID:26022440   PMID:26059829   PMID:26075897   PMID:26121748   PMID:26146080   PMID:26153763   PMID:26153886   PMID:26170288   PMID:26183159   PMID:26196739   PMID:26262558   PMID:26276821  
PMID:26299368   PMID:26335850   PMID:26351277   PMID:26351279   PMID:26370502   PMID:26392462   PMID:26479788   PMID:26496208   PMID:26539991   PMID:26588782   PMID:26590945   PMID:26592235  
PMID:26595888   PMID:26636548   PMID:26677135   PMID:26689548   PMID:26709698   PMID:26717518   PMID:26750311   PMID:26755706   PMID:26764350   PMID:26817845   PMID:26882544   PMID:26885857  
PMID:26912623   PMID:26939627   PMID:26991425   PMID:27001747   PMID:27016074   PMID:27022145   PMID:27069112   PMID:27128797   PMID:27188231   PMID:27238498   PMID:27251748   PMID:27406916  
PMID:27409813   PMID:27414498   PMID:27417725   PMID:27427993   PMID:27512950   PMID:27539849   PMID:27540007   PMID:27570112   PMID:27623388   PMID:27670240   PMID:27681435   PMID:27686391  
PMID:27702761   PMID:27748371   PMID:27756058   PMID:27796300   PMID:27834206   PMID:27849553   PMID:27862183   PMID:27879260   PMID:27917412   PMID:27932504   PMID:27960090   PMID:28011640  
PMID:28027321   PMID:28039301   PMID:28062696   PMID:28166218   PMID:28213522   PMID:28262979   PMID:28276425   PMID:28282567   PMID:28288101   PMID:28290449   PMID:28348106   PMID:28358847  
PMID:28378742   PMID:28391993   PMID:28404843   PMID:28432122   PMID:28442624   PMID:28447667   PMID:28468974   PMID:28497800   PMID:28566502   PMID:28576981   PMID:28604806   PMID:28673932  
PMID:28712289   PMID:28716119   PMID:28723692   PMID:28723893   PMID:28751937   PMID:28758191   PMID:28763036   PMID:28774347   PMID:28901399   PMID:28904127   PMID:28924035   PMID:28965604  
PMID:28986419   PMID:29016674   PMID:29089636   PMID:29113698   PMID:29118089   PMID:29196213   PMID:29239838   PMID:29242538   PMID:29268096   PMID:29287229   PMID:29358280   PMID:29364866  
PMID:29374078   PMID:29419930   PMID:29562202   PMID:29562203   PMID:29572810   PMID:29581513   PMID:29728568   PMID:29746256   PMID:29750958   PMID:29753791   PMID:29771971   PMID:29907599  
PMID:29950673   PMID:29968354   PMID:30018336   PMID:30066904   PMID:30082830   PMID:30131424   PMID:30134157   PMID:30173917   PMID:30196744   PMID:30209176   PMID:30214448   PMID:30392829  
PMID:30403164   PMID:30423296   PMID:30454647   PMID:30487288   PMID:30538296   PMID:30555556   PMID:30574148   PMID:30685387   PMID:30745322   PMID:30759395   PMID:30796216   PMID:30804041  
PMID:30811989   PMID:30890796   PMID:31085626   PMID:31121156   PMID:31123310   PMID:31160588   PMID:31182817   PMID:31237385   PMID:31315996   PMID:31329638   PMID:31337338   PMID:31346084  
PMID:31350176   PMID:31352002   PMID:31358656   PMID:31408005   PMID:31441125   PMID:31467427   PMID:31619669   PMID:31702021   PMID:31722208   PMID:31730616   PMID:31759408   PMID:31872076  
PMID:31900342   PMID:31924792   PMID:31948748   PMID:32045471   PMID:32102981   PMID:32123171   PMID:32171527   PMID:32188878   PMID:32193462   PMID:32205422   PMID:32251490   PMID:32253245  
PMID:32270034   PMID:32292786   PMID:32310998   PMID:32325033   PMID:32444775   PMID:32522833   PMID:32553273   PMID:32607866   PMID:32643603   PMID:32690660   PMID:32820248   PMID:32861799  
PMID:32991625   PMID:32994273   PMID:33042133   PMID:33283645  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm39152,158,588 - 52,201,024 (+)NCBIGRCm39mm39
GRCm39 Ensembl152,158,599 - 52,201,024 (+)Ensembl
GRCm38152,119,438 - 52,161,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,119,440 - 52,161,865 (+)EnsemblGRCm38mm10GRCm38
MGSCv37152,176,282 - 52,218,707 (+)NCBIGRCm37mm9NCBIm37
MGSCv36152,064,002 - 52,105,508 (+)NCBImm8
Celera152,657,880 - 52,700,334 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.81NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl2190,964,358 - 191,020,960 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2190,908,460 - 191,020,960 (-)EnsemblGRCh38hg38GRCh38
GRCh382190,968,989 - 191,014,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372191,833,875 - 191,878,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362191,542,121 - 191,587,181 (-)NCBINCBI36hg18NCBI36
Build 342191,665,769 - 191,704,442NCBI
Celera2185,428,361 - 185,473,577 (-)NCBI
Cytogenetic Map2q32.2NCBI
HuRef2183,693,413 - 183,738,626 (-)NCBIHuRef
CHM1_12191,839,599 - 191,884,801 (-)NCBICHM1_1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.2949,419,561 - 49,459,969 (-)NCBI
Rnor_6.0 Ensembl954,287,541 - 54,484,533 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0954,287,540 - 54,327,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0953,998,204 - 54,038,463 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4946,455,635 - 46,497,560 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1946,458,584 - 46,495,612 (-)NCBI
Celera947,082,882 - 47,123,002 (-)NCBICelera
Cytogenetic Map9q22NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_0049554038,156,660 - 8,194,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554038,156,660 - 8,192,018 (+)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.12B196,186,906 - 196,232,280 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B196,186,906 - 196,232,280 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B78,270,642 - 78,316,074 (-)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.1 Ensembl371,507,219 - 1,550,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1371,513,438 - 1,549,837 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
SpeTri2.0NW_0049365067,196,860 - 7,235,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl1595,593,211 - 95,646,260 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11595,593,201 - 95,646,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.11076,492,859 - 76,537,689 (-)NCBI
ChlSab1.1 Ensembl1076,492,533 - 76,533,393 (-)Ensembl
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_0046248545,067,578 - 5,106,052 (+)NCBI

Position Markers
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38152,155,004 - 52,155,187UniSTSGRCm38
MGSCv37152,211,848 - 52,212,031UniSTSGRCm37
Celera152,693,475 - 52,693,658UniSTS
Cytogenetic Map1C1.1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38152,155,003 - 52,156,055UniSTSGRCm38
MGSCv37152,211,847 - 52,212,899UniSTSGRCm37
Celera152,693,474 - 52,694,526UniSTS
Cytogenetic Map1C1.1UniSTS
cM Map125.9UniSTS

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11902627053026373Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11902627053026373Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11902627053026373Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11930000053300000Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12307051073937756Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2551111058234112Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12551111062907723Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12600000060000000Mouse
1357822Lvrq3_mliver weight QTL 3 (mouse)Not determined13472105773937756Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13472105773937756Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13472105773937756Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13472105773937756Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13472105773937756Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13472105773937756Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13472105773937756Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13909372774477206Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14082884867231097Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14082884867231097Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14082884867231097Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14123396575234112Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14123624075236240Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4222050876220508Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14289887276899008Mouse
12879917Shm3_msperm head morphology 3 (mouse)14414774462907723Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14537861372935898Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14590759679907723Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14681553180815680Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14681553180815680Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14731073581310854Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14884984782850051Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14884984782850051Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14885318682853326Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15085105784851057Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5138244685382446Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5192486670367430Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:820
Count of miRNA genes:496
Interacting mature miRNAs:585
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.



Nucleotide Sequences
RefSeq Transcripts NM_001205313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001205314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF349678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX513160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U06924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U80267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000070968   ⟹   ENSMUSP00000066743
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,455 - 52,161,865 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185743
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,572 - 52,137,852 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186057   ⟹   ENSMUSP00000141132
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,624 - 52,160,730 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186186
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,559 - 52,120,394 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186574   ⟹   ENSMUSP00000140518
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,440 - 52,155,412 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186857   ⟹   ENSMUSP00000140875
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,492 - 52,161,007 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188681   ⟹   ENSMUSP00000141144
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,498 - 52,132,633 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189075
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,150,104 - 52,152,399 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189244   ⟹   ENSMUSP00000140482
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,150,258 - 52,161,863 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189336   ⟹   ENSMUSP00000140643
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,152,253 - 52,159,560 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189347   ⟹   ENSMUSP00000141125
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,549 - 52,155,331 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191435   ⟹   ENSMUSP00000139746
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl152,119,490 - 52,155,412 (+)Ensembl
RefSeq Acc Id: NM_001205313   ⟹   NP_001192242
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,781 - 52,201,024 (+)NCBI
GRCm38152,119,622 - 52,161,865 (+)NCBI
Celera152,657,880 - 52,700,336 (+)ENTREZGENE
RefSeq Acc Id: NM_001205314   ⟹   NP_001192243
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,597 - 52,201,024 (+)NCBI
GRCm38152,119,438 - 52,161,865 (+)ENTREZGENE
Celera152,657,880 - 52,700,336 (+)ENTREZGENE
RefSeq Acc Id: NM_001357627   ⟹   NP_001344556
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,597 - 52,201,024 (+)NCBI
GRCm38152,119,438 - 52,161,865 (+)NCBI
RefSeq Acc Id: NM_009283   ⟹   NP_033309
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,597 - 52,201,024 (+)NCBI
GRCm38152,119,438 - 52,161,865 (+)ENTREZGENE
MGSCv37152,176,282 - 52,218,707 (+)RGD
Celera152,657,880 - 52,700,336 (+)ENTREZGENE
RefSeq Acc Id: XM_017319463   ⟹   XP_017174952
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,601 - 52,200,082 (+)NCBI
GRCm38152,119,441 - 52,160,923 (+)NCBI
RefSeq Acc Id: XM_017319464   ⟹   XP_017174953
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,781 - 52,200,082 (+)NCBI
GRCm38152,119,617 - 52,160,923 (+)NCBI
RefSeq Acc Id: XM_030252467   ⟹   XP_030108327
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,636 - 52,200,082 (+)NCBI
GRCm38152,119,490 - 52,160,923 (+)NCBI
RefSeq Acc Id: XM_036163078   ⟹   XP_036018971
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,588 - 52,194,571 (+)NCBI
RefSeq Acc Id: XR_003954297
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,588 - 52,194,571 (+)NCBI
GRCm38152,119,442 - 52,155,094 (+)NCBI
RefSeq Acc Id: XR_003954298
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,158,601 - 52,193,040 (+)NCBI
GRCm38152,119,490 - 52,153,881 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033309   ⟸   NM_009283
- Peptide Label: isoform 2
- UniProtKB: Q8C3V4 (UniProtKB/TrEMBL),   Q8C497 (UniProtKB/TrEMBL),   Q8CFQ1 (UniProtKB/TrEMBL),   Q99K94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001192243   ⟸   NM_001205314
- Peptide Label: isoform 2
- UniProtKB: Q8C3V4 (UniProtKB/TrEMBL),   Q8CFQ1 (UniProtKB/TrEMBL),   Q99K94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001192242   ⟸   NM_001205313
- Peptide Label: isoform 1
- UniProtKB: A0A087WSP5 (UniProtKB/TrEMBL),   Q8C8M3 (UniProtKB/TrEMBL),   Q8CFQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174953   ⟸   XM_017319464
- Peptide Label: isoform X1
- UniProtKB: Q8C3V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174952   ⟸   XM_017319463
- Peptide Label: isoform X1
- UniProtKB: Q8C3V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344556   ⟸   NM_001357627
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030108327   ⟸   XM_030252467
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000066743   ⟸   ENSMUST00000070968
RefSeq Acc Id: ENSMUSP00000140518   ⟸   ENSMUST00000186574
RefSeq Acc Id: ENSMUSP00000140875   ⟸   ENSMUST00000186857
RefSeq Acc Id: ENSMUSP00000139746   ⟸   ENSMUST00000191435
RefSeq Acc Id: ENSMUSP00000141132   ⟸   ENSMUST00000186057
RefSeq Acc Id: ENSMUSP00000141144   ⟸   ENSMUST00000188681
RefSeq Acc Id: ENSMUSP00000140482   ⟸   ENSMUST00000189244
RefSeq Acc Id: ENSMUSP00000141125   ⟸   ENSMUST00000189347
RefSeq Acc Id: ENSMUSP00000140643   ⟸   ENSMUST00000189336
RefSeq Acc Id: XP_036018971   ⟸   XM_036163078
- Peptide Label: isoform X2
Protein Domains
SH2   STAT_int

RGD ID:6873670
Promoter ID:EPDNEW_M286
Type:initiation region
Description:Mus musculus signal transducer and activator of transcription1 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm38152,119,490 - 52,119,550EPDNEW
RGD ID:6818547
Promoter ID:MM_KWN:694
SO ACC ID:SO:0000170
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000070968,   NM_009283,   UC007AXY.1,   UC007AXZ.1,   UC007AYB.1,   UC007AYC.1
Mouse AssemblyChrPosition (strand)Source
MGSCv36152,175,446 - 52,176,777 (+)MPROMDB
RGD ID:6848967
Promoter ID:MM_XEF:114
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:NM_001012914,   NM_001079467,   NM_001088787,   NM_001123654,   NM_001124707,   NM_001124746,   NM_001133211,   NM_001141285,   NM_001166203,   NM_007315,   NM_131480,   NM_139266,   NM_213769
Mouse AssemblyChrPosition (strand)Source
MGSCv36152,179,446 - 52,180,052 (+)MPROMDB
RGD ID:6818548
Promoter ID:MM_KWN:695
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Mouse AssemblyChrPosition (strand)Source
MGSCv36152,200,099 - 52,200,599 (+)MPROMDB
RGD ID:6818543
Promoter ID:MM_KWN:696
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Mouse AssemblyChrPosition (strand)Source
MGSCv36152,206,346 - 52,207,052 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103063 AgrOrtholog
Ensembl Genes ENSMUSG00000026104 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000066743 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000139746 UniProtKB/TrEMBL
  ENSMUSP00000140482 UniProtKB/TrEMBL
  ENSMUSP00000140643 UniProtKB/TrEMBL
  ENSMUSP00000141125 UniProtKB/TrEMBL
  ENSMUSP00000141144 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070968 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000188681 UniProtKB/TrEMBL
  ENSMUST00000189244 UniProtKB/TrEMBL
  ENSMUST00000189336 UniProtKB/TrEMBL
  ENSMUST00000189347 UniProtKB/TrEMBL
  ENSMUST00000191435 UniProtKB/TrEMBL
Gene3D-CATH 1.10.532.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro p53-like_TF_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT1_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT1_SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT1_TAZ2-bd_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_TF_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_TF_coiled-coil UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_TF_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_TF_DNA-bd_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_TF_prot_interaction UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20846 UniProtKB/TrEMBL
PANTHER PTHR11801 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT1_TAZ2bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAT_int UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stat1 PhenoGen
PROSITE SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART STAT_int UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47655 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48092 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL