STAT1 (signal transducer and activator of transcription 1) - Rat Genome Database
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Gene: STAT1 (signal transducer and activator of transcription 1) Homo sapiens
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Symbol: STAT1
Name: signal transducer and activator of transcription 1
RGD ID: 732184
HGNC Page HGNC
Description: Exhibits several functions, including DNA-binding transcription factor binding activity; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and enzyme binding activity. Involved in several processes, including cellular response to cytokine stimulus; macrophage derived foam cell differentiation; and positive regulation of macromolecule metabolic process. Localizes to several cellular components, including chromatin; nuclear lumen; and perinuclear region of cytoplasm. Implicated in breast carcinoma; immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Biomarker of angiomyolipoma; breast cancer; lymphangioleiomyomatosis; and nephroblastoma.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CANDF7; DKFZp686B04100; IMD31A; IMD31B; IMD31C; ISGF-3; signal transducer and activator of transcription 1, 91kD; signal transducer and activator of transcription 1, 91kDa; signal transducer and activator of transcription 1-alpha/beta; signal transducer and activator of transcription-1; STAT91; transcription factor ISGF-3 components p91/p84
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: This gene has been reviewed for its involvement in coronavirus biology, and is involved in immune response or antiviral activity.
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2190,964,358 - 191,020,960 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2190,908,460 - 191,020,960 (-)EnsemblGRCh38hg38GRCh38
GRCh382190,968,989 - 191,014,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372191,833,875 - 191,878,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362191,542,121 - 191,587,181 (-)NCBINCBI36hg18NCBI36
Build 342191,665,769 - 191,704,442NCBI
Celera2185,428,361 - 185,473,577 (-)NCBI
Cytogenetic Map2q32.2NCBI
HuRef2183,693,413 - 183,738,626 (-)NCBIHuRef
CHM1_12191,839,599 - 191,884,801 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-viniferin  (ISO)
(+)-catechin  (EXP)
(+)-schisandrin B  (ISO)
(+)-taxifolin  (EXP)
(-)-Arctigenin  (ISO)
(-)-epigallocatechin 3-gallate  (EXP)
(R)-lipoic acid  (EXP)
(R)-mevalonic acid  (EXP,ISO)
(S)-colchicine  (EXP)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (ISO)
1,4-benzoquinone  (EXP)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (EXP)
15-deoxy-Delta(12,14)-prostaglandin J2  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dichloroindophenol  (EXP)
2-amino-2-deoxy-D-glucopyranose  (EXP)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (EXP)
2-nitrofluorene  (ISO)
2-trans,6-trans,10-trans-geranylgeranyl diphosphate  (ISO)
22-Hydroxycholesterol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (ISO)
5,6,7-trimethoxyflavone  (ISO)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (EXP)
5-aza-2'-deoxycytidine  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (EXP)
9-cis-retinoic acid  (EXP)
acetamide  (ISO)
aconitine  (ISO)
acrolein  (EXP)
actinomycin D  (EXP)
afimoxifene  (EXP)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP)
allopurinol  (EXP)
alpha-pinene  (EXP)
amantadine  (EXP)
aminoguanidine  (EXP)
ammonium chloride  (ISO)
amorolfine  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
antigen  (ISO)
antirheumatic drug  (EXP)
apocynin  (EXP,ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP,ISO)
azathioprine  (EXP)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
butenafine  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (ISO)
Cannabinol  (ISO)
capsaicin  (ISO)
capsazepine  (ISO)
carbamazepine  (EXP)
CARBENOXOLONE  (EXP)
carbon nanotube  (ISO)
carvedilol  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cholesterol  (ISO)
choline  (ISO)
chromium(6+)  (EXP,ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP,ISO)
coniferyl aldehyde  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
curcumin  (EXP,ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cytochalasin D  (EXP)
D-glucose  (ISO)
daidzein  (ISO)
DDT  (EXP)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP,ISO)
diclofenac  (EXP,ISO)
diethyl malate  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP,ISO)
dimemorfan  (ISO)
dimethylarsinous acid  (EXP)
dinitrogen oxide  (EXP)
diuron  (ISO)
divanadium pentaoxide  (EXP)
dorsomorphin  (EXP)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
etoposide  (EXP)
eugenol  (EXP)
flavonoids  (EXP)
flutamide  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
fulvestrant  (EXP)
genistein  (EXP,ISO)
gentamycin  (ISO)
geraniol  (EXP)
glucose  (ISO)
glutathione  (EXP,ISO)
gold atom  (ISO)
gold(0)  (ISO)
herbimycin  (ISO)
hesperetin  (ISO)
hexachlorobenzene  (ISO)
hydrazine  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (EXP)
ICI D1694  (EXP)
indometacin  (EXP)
Interferon beta-1b  (EXP)
iopamidol  (EXP)
irinotecan  (EXP)
iron(2+) sulfate (anhydrous)  (ISO)
itraconazole  (EXP)
kaempferol  (ISO)
ketoconazole  (EXP,ISO)
L-arginine  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipoic acid  (EXP)
lipopolysaccharide  (EXP,ISO)
Luliconazole  (EXP)
lycorine  (ISO)
Mecamylamine  (EXP)
melatonin  (ISO)
mercury dichloride  (EXP)
metam  (ISO)
methotrexate  (EXP)
methylmercury chloride  (EXP)
Methylthiouracil  (EXP)
N'-Nitrosonornicotine  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP)
nickel dichloride  (ISO)
nickel sulfate  (EXP,ISO)
nicotine  (EXP)
nitric oxide  (ISO)
nitrofurantoin  (EXP)
o-anisidine  (EXP)
ochratoxin A  (ISO)
oridonin  (EXP)
oroxylin A  (ISO)
ozone  (EXP,ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
PF-956980  (EXP)
phenethyl isothiocyanate  (EXP,ISO)
phenobarbital  (ISO)
phenylarsine oxide  (EXP)
phenylephrine  (ISO)
phenylmercury acetate  (EXP)
PhIP  (ISO)
phosphatidic acid  (ISO)
pipoxolan  (ISO)
pirinixic acid  (ISO)
pitavastatin  (ISO)
pitavastatin(1-)  (ISO)
platycodin D  (EXP)
poly(I:C)  (EXP,ISO)
potassium chromate  (EXP)
potassium dichromate  (EXP)
pravastatin  (ISO)
protein kinase inhibitor  (EXP)
quercetin  (EXP,ISO)
raloxifene  (EXP)
resiniferatoxin  (ISO)
resveratrol  (EXP,ISO)
Ro 41-5253  (EXP)
rotenone  (EXP)
SB 203580  (EXP)
SB 431542  (EXP)
sevoflurane  (ISO)
silicon dioxide  (ISO)
simvastatin  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium aurothiomalate  (EXP)
Soman  (ISO)
stattic  (ISO)
sulfates  (EXP)
T-2 toxin  (ISO)
tamibarotene  (EXP)
tamoxifen  (EXP,ISO)
taurocholic acid  (ISO)
terbinafine  (EXP)
tert-butyl hydroperoxide  (EXP,ISO)
testosterone enanthate  (EXP)
tetrachloromethane  (ISO)
tetrahydropalmatine  (EXP)
thioacetamide  (ISO)
thiophenes  (EXP)
titanium dioxide  (ISO)
tofacitinib  (EXP,ISO)
Triptolide  (ISO)
troglitazone  (ISO)
ursodeoxycholic acid  (EXP)
valsartan  (EXP)
vancomycin  (ISO)
verteporfin  (ISO)
vincaleukoblastine  (EXP)
vinclozolin  (ISO)
vincristine  (EXP)
vinyl carbamate  (ISO)
vitamin E  (EXP)
withaferin A  (ISO)
zidovudine  (EXP)
zinc atom  (EXP,ISO)
zinc oxide  (EXP)
zinc protoporphyrin  (EXP)
zinc sulfate  (EXP)
zinc(0)  (EXP,ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of cysteine-type endopeptidase activity involved in apoptotic process  (ISO)
blood circulation  (IEA,ISO,ISS)
cellular response to cytokine stimulus  (IEA)
cellular response to insulin stimulus  (IEA,ISO)
cellular response to interferon-beta  (IMP)
cellular response to interferon-gamma  (IDA)
cellular response to lipopolysaccharide  (ISO)
cellular response to organic cyclic compound  (IEA)
cytokine-mediated signaling pathway  (IBA,ISO,TAS)
defense response  (IBA)
defense response to virus  (IDA)
endothelial cell migration  (IMP)
interferon-gamma-mediated signaling pathway  (IDA,IMP,ISS,TAS)
interleukin-21-mediated signaling pathway  (TAS)
interleukin-27-mediated signaling pathway  (IDA,TAS)
interleukin-35-mediated signaling pathway  (TAS)
interleukin-6-mediated signaling pathway  (TAS)
interleukin-9-mediated signaling pathway  (TAS)
lipopolysaccharide-mediated signaling pathway  (ISO)
macrophage derived foam cell differentiation  (IDA)
metanephric mesenchymal cell differentiation  (ISS)
metanephric mesenchymal cell proliferation involved in metanephros development  (ISS)
negative regulation by virus of viral protein levels in host cell  (IMP)
negative regulation of angiogenesis  (IMP)
negative regulation of endothelial cell proliferation  (IMP)
negative regulation of I-kappaB kinase/NF-kappaB signaling  (IMP)
negative regulation of macrophage fusion  (ISO)
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISS)
negative regulation of metanephric nephron tubule epithelial cell differentiation  (ISS)
negative regulation of transcription by RNA polymerase II  (ISS)
positive regulation of cell population proliferation  (ISO)
positive regulation of defense response to virus by host  (IGI,IMP)
positive regulation of erythrocyte differentiation  (IMP)
positive regulation of interferon-alpha production  (IDA)
positive regulation of mesenchymal cell proliferation  (ISS)
positive regulation of nitric-oxide synthase biosynthetic process  (IEA,ISO)
positive regulation of smooth muscle cell proliferation  (IEA,ISO,ISS)
positive regulation of transcription by RNA polymerase II  (IDA,IMP)
positive regulation of transcription of Notch receptor target  (TAS)
positive regulation of transcription, DNA-templated  (IDA,IGI,IMP)
receptor signaling pathway via JAK-STAT  (IBA,IDA,IEA,ISO)
regulation of apoptotic process  (TAS)
regulation of cell population proliferation  (IBA)
regulation of interferon-gamma-mediated signaling pathway  (TAS)
regulation of transcription by RNA polymerase II  (IDA)
regulation of transcription, DNA-templated  (IEA)
renal tubule development  (IMP)
response to bacterium  (ISO)
response to cAMP  (IEA,ISO,ISS)
response to cytokine  (ISO,ISS)
response to drug  (IEA,ISO)
response to exogenous dsRNA  (ISO)
response to hydrogen peroxide  (IEA,ISO)
response to interferon-beta  (IMP)
response to lipopolysaccharide  (ISO)
response to mechanical stimulus  (IEA,ISO)
response to nutrient  (IEA,ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (IBA,ISO,ISS)
response to type I interferon  (ISO)
signal transduction  (IEA)
transcription, DNA-templated  (ISO)
tumor necrosis factor-mediated signaling pathway  (IDA)
type I interferon signaling pathway  (IBA,IDA,ISS,TAS)
viral process  (IEA)

Cellular Component
axon  (IEA,ISO,ISS)
chromatin  (IDA,ISA)
cytoplasm  (IDA,IEA,ISO)
cytosol  (IDA,TAS)
dendrite  (IEA,ISO,ISS)
nucleolus  (IDA)
nucleoplasm  (IDA,TAS)
nucleus  (IDA,IEA,ISO)
perinuclear region of cytoplasm  (IDA)
protein-containing complex  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal serum interferon-gamma level  (IAGP)
Antiphospholipid antibody positivity  (IAGP)
Autoimmune hemolytic anemia  (IAGP)
Autoimmune thrombocytopenia  (IAGP)
Autosomal dominant inheritance  (IAGP)
Autosomal recessive inheritance  (IAGP)
B lymphocytopenia  (IAGP)
Blepharitis  (IAGP)
Bronchiectasis  (IAGP)
Carotid artery dilatation  (IAGP)
Cellulitis  (IAGP)
Chronic diarrhea  (IAGP)
Chronic mucocutaneous candidiasis  (IAGP)
Chronic oral candidiasis  (IAGP)
Cognitive impairment  (IAGP)
Combined immunodeficiency  (IAGP)
Congestive heart failure  (IAGP)
Delayed puberty  (IAGP)
Delayed skeletal maturation  (IAGP)
Delayed speech and language development  (IAGP)
Diabetes mellitus  (IAGP)
Diarrhea  (IAGP)
Dilatation of the cerebral artery  (IAGP)
Diminished mental health  (IAGP)
Eczema  (IAGP)
Encephalitis  (IAGP)
Enterocolitis  (IAGP)
Esophageal carcinoma  (IAGP)
Failure to thrive  (IAGP)
Functional abnormality of the bladder  (IAGP)
Generalized osteoporosis  (IAGP)
Hepatitis  (IAGP)
Hepatosplenomegaly  (IAGP)
Herpes simplex encephalitis  (IAGP)
Hypothyroidism  (IAGP)
Immune dysregulation  (IAGP)
Immunodeficiency  (IAGP)
Incomplete penetrance  (IAGP)
Liver abscess  (IAGP)
Lymphopenia  (IAGP)
Medial calcification of large arteries  (IAGP)
Neutropenia in presence of anti-neutropil antibodies  (IAGP)
Onychomycosis  (IAGP)
Oropharyngeal squamous cell carcinoma  (IAGP)
Osteopenia  (IAGP)
Patent foramen ovale  (IAGP)
Primary hypothyroidism  (IAGP)
Pulmonary arterial hypertension  (IAGP)
Recurrent Aspergillus infections  (IAGP)
Recurrent bacterial skin infections  (IAGP)
Recurrent candida infections  (IAGP)
Recurrent fungal infections  (IAGP)
Recurrent herpes  (IAGP)
Recurrent infections  (IAGP)
Recurrent mycobacterial infections  (IAGP)
Recurrent respiratory infections  (IAGP)
Recurrent skin infections  (IAGP)
Recurrent Staphylococcus aureus infections  (IAGP)
Recurrent upper respiratory tract infections  (IAGP)
Recurrent viral infections  (IAGP)
Renal artery stenosis  (IAGP)
Renovascular hypertension  (IAGP)
Severe T-cell immunodeficiency  (IAGP)
Short stature  (IAGP)
Thyroiditis  (IAGP)
Type I diabetes mellitus  (IAGP)
Villous atrophy  (IAGP)
References

References - curated
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2. Banes AK, etal., Am J Physiol Renal Physiol. 2004 Apr;286(4):F653-9. Epub 2003 Dec 16.
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4. Buess M, etal., Genome Biol. 2007;8(9):R191.
5. Dupuis S, etal., Science. 2001 Jul 13;293(5528):300-3.
6. El-Hashemite N and Kwiatkowski DJ, Am J Respir Cell Mol Biol. 2005 Sep;33(3):227-30. Epub 2005 Jun 30.
7. Fan XM, etal., Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi. 2006 Jul;22(4):487-9, 492.
8. GOA_HUMAN data from the GO Consortium
9. Goody RJ, etal., J Neurovirol. 2007 Aug;13(4):373-83.
10. Hofer MJ, etal., J Virol. 2012 Jun;86(12):6932-46. doi: 10.1128/JVI.07147-11. Epub 2012 Apr 11.
11. Jia Y, etal., PLoS One. 2011;6(10):e27006. Epub 2011 Oct 31.
12. Jones SA, etal., J Clin Invest. 2011 Sep 1;121(9):3375-83. doi: 10.1172/JCI57158. Epub 2011 Sep 1.
13. Kisseleva T, etal., Gene 2002 Feb 20;285(1-2):1-24.
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15. McCormick J, etal., FASEB J. 2006 Oct;20(12):2115-7. Epub 2006 Aug 25.
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17. Murray PJ J Immunol. 2007 Mar 1;178(5):2623-9.
18. Na YJ, etal., J Neurochem. 2007 Oct;103(2):637-49.
19. OMIM Disease Annotation Pipeline
20. Pipeline to import KEGG annotations from KEGG into RGD
21. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
22. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. RGD automated import pipeline for gene-chemical interactions
24. RGD automated import pipeline for human HPO-to-gene-to-disease annotations
25. Sabat R, etal., Cytokine Growth Factor Rev. 2010 Oct;21(5):331-44. doi: 10.1016/j.cytogfr.2010.09.002. Epub 2010 Nov 5.
26. Schroeder MD, etal., Mol Cell Endocrinol. 2001 Apr 25;175(1-2):173-83.
27. Shahrara S, etal., Arthritis Rheum. 2003 Dec;48(12):3568-83.
28. Sung PS, etal., Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10443-8. doi: 10.1073/pnas.1513341112. Epub 2015 Jul 27.
29. Timofeeva OA, etal., Oncogene. 2006 Dec 7;25(58):7555-64. Epub 2006 Jun 26.
30. West DA, etal., Neuroscience. 2004;127(2):333-9.
31. Widschwendter A, etal., Clin Cancer Res. 2002 Oct;8(10):3065-74.
32. Yang N, etal., Nephrol Dial Transplant. 2008 Jan;23(1):91-100. Epub 2007 Jul 31.
33. Yao YM, etal., Zhonghua Wai Ke Za Zhi. 2006 Jul 1;44(13):916-20.
34. Zhao JB, etal., Neurosci Lett. 2011 Jul 8;498(2):147-52. Epub 2011 May 10.
35. Zhou Z, etal., Cell Host Microbe. 2020 Jun 10;27(6):883-890.e2. doi: 10.1016/j.chom.2020.04.017. Epub 2020 May 4.
Additional References at PubMed
PMID:1496401   PMID:1502203   PMID:7510216   PMID:7514165   PMID:7543024   PMID:7657660   PMID:7690989   PMID:7885841   PMID:8125298   PMID:8156998   PMID:8232552   PMID:8549654  
PMID:8605877   PMID:8608597   PMID:8621447   PMID:8631962   PMID:8662591   PMID:8889548   PMID:8943351   PMID:8986769   PMID:9037008   PMID:9069288   PMID:9121453   PMID:9135145  
PMID:9205132   PMID:9284918   PMID:9344858   PMID:9355737   PMID:9373245   PMID:9452495   PMID:9484840   PMID:9584171   PMID:9630226   PMID:9724754   PMID:9804857   PMID:9843502  
PMID:9880553   PMID:9881977   PMID:9925928   PMID:9989503   PMID:10067896   PMID:10358045   PMID:10358079   PMID:10446176   PMID:10464260   PMID:10490649   PMID:10490982   PMID:10506573  
PMID:10602027   PMID:10652206   PMID:10692450   PMID:10702714   PMID:10764778   PMID:10792030   PMID:10805787   PMID:10820245   PMID:10848577   PMID:10848598   PMID:10851046   PMID:10851062  
PMID:10918587   PMID:10954736   PMID:10961983   PMID:10964507   PMID:10973496   PMID:10982844   PMID:11134049   PMID:11152457   PMID:11226159   PMID:11238845   PMID:11248027   PMID:11257227  
PMID:11278462   PMID:11278865   PMID:11294897   PMID:11301323   PMID:11418623   PMID:11438544   PMID:11442634   PMID:11520787   PMID:11594781   PMID:11675348   PMID:11722592   PMID:11752148  
PMID:11777927   PMID:11804954   PMID:11815625   PMID:11835405   PMID:11839738   PMID:11843291   PMID:11886859   PMID:11909852   PMID:11909970   PMID:11923478   PMID:11927559   PMID:11932384  
PMID:11972023   PMID:11981818   PMID:12048190   PMID:12070153   PMID:12108949   PMID:12130529   PMID:12138178   PMID:12161037   PMID:12165521   PMID:12167251   PMID:12171910   PMID:12191570  
PMID:12223098   PMID:12232043   PMID:12232802   PMID:12270932   PMID:12356736   PMID:12388709   PMID:12403783   PMID:12426389   PMID:12447867   PMID:12459177   PMID:12477932   PMID:12539042  
PMID:12551969   PMID:12590259   PMID:12610144   PMID:12629155   PMID:12634403   PMID:12637327   PMID:12722480   PMID:12734330   PMID:12748293   PMID:12759242   PMID:12777975   PMID:12788789  
PMID:12804771   PMID:12807916   PMID:12817007   PMID:12832402   PMID:12846741   PMID:12855573   PMID:12855578   PMID:12856330   PMID:12867595   PMID:12873986   PMID:12917439   PMID:12923054  
PMID:12948935   PMID:12960323   PMID:12963127   PMID:12967644   PMID:14499622   PMID:14500749   PMID:14517261   PMID:14557668   PMID:14599788   PMID:14600148   PMID:14623896   PMID:14654078  
PMID:14654702   PMID:14656722   PMID:14657353   PMID:14688135   PMID:14690454   PMID:14702039   PMID:14704793   PMID:14746803   PMID:14751560   PMID:14755057   PMID:14963018   PMID:14976049  
PMID:14978237   PMID:15010467   PMID:15055356   PMID:15123634   PMID:15140960   PMID:15146197   PMID:15165826   PMID:15210729   PMID:15213094   PMID:15217838   PMID:15221897   PMID:15280488  
PMID:15284024   PMID:15284440   PMID:15322115   PMID:15467722   PMID:15489334   PMID:15494521   PMID:15527154   PMID:15604419   PMID:15638726   PMID:15650219   PMID:15695802   PMID:15778351  
PMID:15780933   PMID:15795279   PMID:15824515   PMID:15825084   PMID:15894584   PMID:15919942   PMID:15979846   PMID:15996661   PMID:15998520   PMID:16007122   PMID:16009940   PMID:16077199  
PMID:16139798   PMID:16148108   PMID:16148142   PMID:16189514   PMID:16195225   PMID:16195385   PMID:16223733   PMID:16236267   PMID:16254375   PMID:16257975   PMID:16260419   PMID:16273093  
PMID:16298512   PMID:16306601   PMID:16318585   PMID:16344560   PMID:16388135   PMID:16467883   PMID:16481475   PMID:16501077   PMID:16511123   PMID:16512786   PMID:16531398   PMID:16571725  
PMID:16572323   PMID:16574066   PMID:16585190   PMID:16628196   PMID:16703666   PMID:16773129   PMID:16878149   PMID:16897667   PMID:16904741   PMID:16918696   PMID:16934001   PMID:16940534  
PMID:16951379   PMID:16978698   PMID:17030574   PMID:17075845   PMID:17145596   PMID:17182865   PMID:17196131   PMID:17227821   PMID:17237409   PMID:17266440   PMID:17275127   PMID:17287281  
PMID:17346710   PMID:17351669   PMID:17353931   PMID:17371985   PMID:17386941   PMID:17427945   PMID:17442890   PMID:17475642   PMID:17486072   PMID:17490620   PMID:17523873   PMID:17538964  
PMID:17561467   PMID:17596301   PMID:17617740   PMID:17620599   PMID:17640695   PMID:17680769   PMID:17686504   PMID:17703412   PMID:17726060   PMID:17804871   PMID:17878351   PMID:17897103  
PMID:17909067   PMID:17918184   PMID:17923090   PMID:17928350   PMID:17933493   PMID:17938255   PMID:17983380   PMID:17986321   PMID:18003888   PMID:18029348   PMID:18035482   PMID:18037959  
PMID:18062835   PMID:18218993   PMID:18225539   PMID:18280748   PMID:18305014   PMID:18305569   PMID:18338947   PMID:18348986   PMID:18370868   PMID:18381204   PMID:18401423   PMID:18424756  
PMID:18463151   PMID:18483262   PMID:18500930   PMID:18566411   PMID:18579584   PMID:18586252   PMID:18591661   PMID:18633131   PMID:18660489   PMID:18662321   PMID:18676680   PMID:18723680  
PMID:18771758   PMID:18775329   PMID:18787082   PMID:18787531   PMID:18789440   PMID:18803832   PMID:18818378   PMID:18832710   PMID:18950845   PMID:18989459   PMID:19007958   PMID:19012493  
PMID:19017763   PMID:19041714   PMID:19046253   PMID:19074829   PMID:19088846   PMID:19100922   PMID:19124747   PMID:19131965   PMID:19170196   PMID:19171783   PMID:19211553   PMID:19223260  
PMID:19231233   PMID:19258923   PMID:19274049   PMID:19279332   PMID:19299420   PMID:19333953   PMID:19342095   PMID:19351818   PMID:19380416   PMID:19393742   PMID:19404407   PMID:19423540  
PMID:19424608   PMID:19434718   PMID:19436109   PMID:19437244   PMID:19439556   PMID:19453261   PMID:19464956   PMID:19478064   PMID:19479051   PMID:19502801   PMID:19508864   PMID:19515782  
PMID:19553685   PMID:19561067   PMID:19574556   PMID:19582813   PMID:19594299   PMID:19596857   PMID:19604093   PMID:19622834   PMID:19625176   PMID:19646959   PMID:19647793   PMID:19652026  
PMID:19656875   PMID:19667270   PMID:19691533   PMID:19692168   PMID:19781967   PMID:19801665   PMID:19802007   PMID:19834108   PMID:19853614   PMID:19857525   PMID:19891767   PMID:19913121  
PMID:19915063   PMID:19915608   PMID:19935876   PMID:20011528   PMID:20045654   PMID:20065083   PMID:20093796   PMID:20098684   PMID:20103601   PMID:20180146   PMID:20195357   PMID:20211142  
PMID:20225206   PMID:20331378   PMID:20345984   PMID:20347693   PMID:20353823   PMID:20379614   PMID:20380698   PMID:20403236   PMID:20406964   PMID:20428775   PMID:20438785   PMID:20457620  
PMID:20503287   PMID:20519510   PMID:20523058   PMID:20562129   PMID:20568281   PMID:20576130   PMID:20588308   PMID:20624457   PMID:20628086   PMID:20628624   PMID:20662656   PMID:20798561  
PMID:20802378   PMID:20810735   PMID:20814891   PMID:20829351   PMID:20832538   PMID:20833730   PMID:20841510   PMID:20861313   PMID:20936779   PMID:20937132   PMID:20937272   PMID:20949125  
PMID:20974984   PMID:20980339   PMID:21056555   PMID:21057861   PMID:21079652   PMID:21084836   PMID:21091911   PMID:21099673   PMID:21115047   PMID:21207025   PMID:21268089   PMID:21288140  
PMID:21303487   PMID:21307288   PMID:21311224   PMID:21321110   PMID:21346151   PMID:21354905   PMID:21362620   PMID:21368418   PMID:21372127   PMID:21385873   PMID:21466707   PMID:21477834  
PMID:21533215   PMID:21571862   PMID:21572044   PMID:21576370   PMID:21593149   PMID:21674123   PMID:21689637   PMID:21690236   PMID:21697347   PMID:21714643   PMID:21727188   PMID:21734056  
PMID:21752694   PMID:21772053   PMID:21795355   PMID:21796151   PMID:21826217   PMID:21873635   PMID:21886773   PMID:21903422   PMID:21914072   PMID:21937453   PMID:21988832   PMID:22002246  
PMID:22022391   PMID:22025054   PMID:22038351   PMID:22065572   PMID:22115721   PMID:22174846   PMID:22178447   PMID:22193460   PMID:22194871   PMID:22195034   PMID:22217266   PMID:22242177  
PMID:22253910   PMID:22262126   PMID:22320867   PMID:22326919   PMID:22381273   PMID:22383882   PMID:22401175   PMID:22407921   PMID:22425562   PMID:22437822   PMID:22474288   PMID:22479354  
PMID:22488367   PMID:22514085   PMID:22526675   PMID:22535619   PMID:22539792   PMID:22558273   PMID:22573496   PMID:22647704   PMID:22674974   PMID:22693070   PMID:22730530   PMID:22748021  
PMID:22748593   PMID:22757586   PMID:22805310   PMID:22808166   PMID:22811740   PMID:22828446   PMID:22833565   PMID:22838736   PMID:22844427   PMID:22863883   PMID:22920460   PMID:22939629  
PMID:22942432   PMID:22973045   PMID:23043228   PMID:23068100   PMID:23072252   PMID:23076242   PMID:23086340   PMID:23108375   PMID:23128233   PMID:23153456   PMID:23154639   PMID:23180800  
PMID:23240025   PMID:23271704   PMID:23274199   PMID:23306614   PMID:23326349   PMID:23349666   PMID:23363816   PMID:23378427   PMID:23383273   PMID:23386060   PMID:23401241   PMID:23403048  
PMID:23452095   PMID:23471820   PMID:23472246   PMID:23486482   PMID:23487038   PMID:23534974   PMID:23535064   PMID:23541320   PMID:23554911   PMID:23582260   PMID:23585528   PMID:23585529  
PMID:23588992   PMID:23609054   PMID:23621408   PMID:23640055   PMID:23703473   PMID:23704922   PMID:23708675   PMID:23709754   PMID:23740952   PMID:23741352   PMID:23756862   PMID:23796786  
PMID:23856440   PMID:23890093   PMID:23910645   PMID:23917355   PMID:23920124   PMID:23922848   PMID:23940278   PMID:23941832   PMID:23943785   PMID:23950992   PMID:23956138   PMID:23958647  
PMID:23984931   PMID:24065129   PMID:24086752   PMID:24188975   PMID:24239102   PMID:24292724   PMID:24343863   PMID:24360797   PMID:24418364   PMID:24449862   PMID:24451065   PMID:24454965  
PMID:24478085   PMID:24562503   PMID:24626739   PMID:24658140   PMID:24658320   PMID:24681956   PMID:24693969   PMID:24711643   PMID:24715035   PMID:24725474   PMID:24736615   PMID:24742347  
PMID:24769842   PMID:24797263   PMID:24810717   PMID:24814927   PMID:24821973   PMID:24825907   PMID:24838635   PMID:24847715   PMID:24858600   PMID:24878287   PMID:24882218   PMID:24886089  
PMID:24894488   PMID:24931237   PMID:24975396   PMID:24992036   PMID:25008924   PMID:25042743   PMID:25056900   PMID:25104439   PMID:25113744   PMID:25147182   PMID:25170834   PMID:25205818  
PMID:25241761   PMID:25267067   PMID:25271158   PMID:25288569   PMID:25293394   PMID:25311665   PMID:25355139   PMID:25378636   PMID:25402006   PMID:25416956   PMID:25438156   PMID:25451029  
PMID:25468996   PMID:25474274   PMID:25478796   PMID:25526807   PMID:25529283   PMID:25589644   PMID:25609649   PMID:25686822   PMID:25704763   PMID:25707685   PMID:25733689   PMID:25753288  
PMID:25771902   PMID:25773877   PMID:25812002   PMID:25814554   PMID:25818476   PMID:25847223   PMID:25865496   PMID:25880788   PMID:25905045   PMID:25921289   PMID:25924204   PMID:25943894  
PMID:25959715   PMID:25965795   PMID:25972070   PMID:26025667   PMID:26028607   PMID:26080282   PMID:26081906   PMID:26113305   PMID:26116514   PMID:26119280   PMID:26153763   PMID:26156524  
PMID:26186194   PMID:26193702   PMID:26209609   PMID:26238487   PMID:26242181   PMID:26255980   PMID:26275341   PMID:26277624   PMID:26335850   PMID:26339056   PMID:26344197   PMID:26351076  
PMID:26353965   PMID:26362649   PMID:26396258   PMID:26397446   PMID:26401035   PMID:26413796   PMID:26467763   PMID:26469385   PMID:26479788   PMID:26495772   PMID:26496208   PMID:26502610  
PMID:26504087   PMID:26514428   PMID:26560068   PMID:26592235   PMID:26604104   PMID:26635038   PMID:26641092   PMID:26673895   PMID:26676749   PMID:26676844   PMID:26678048   PMID:26709547  
PMID:26719274   PMID:26743090   PMID:26747737   PMID:26774166   PMID:26777405   PMID:26795953   PMID:26862581   PMID:26889034   PMID:26901336   PMID:26928402   PMID:26931423   PMID:26966684  
PMID:26996068   PMID:27114460   PMID:27137788   PMID:27153543   PMID:27191495   PMID:27213290   PMID:27220814   PMID:27227879   PMID:27228072   PMID:27229929   PMID:27301951   PMID:27304884  
PMID:27350337   PMID:27379765   PMID:27386938   PMID:27412544   PMID:27422384   PMID:27434509   PMID:27437406   PMID:27464833   PMID:27470968   PMID:27485016   PMID:27486982   PMID:27512950  
PMID:27581546   PMID:27617644   PMID:27684187   PMID:27686004   PMID:27705947   PMID:27715403   PMID:27769057   PMID:27781323   PMID:27796300   PMID:27808400   PMID:27819281   PMID:27820940  
PMID:27825967   PMID:27855377   PMID:27855602   PMID:27856304   PMID:27893714   PMID:27913706   PMID:27929099   PMID:27965977   PMID:27992555   PMID:28011640   PMID:28039018   PMID:28069426  
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PMID:28447741   PMID:28510715   PMID:28514442   PMID:28552376   PMID:28578326   PMID:28593745   PMID:28601685   PMID:28622443   PMID:28649004   PMID:28671669   PMID:28712289   PMID:28739485  
PMID:28753426   PMID:28819304   PMID:28865492   PMID:28914637   PMID:28922548   PMID:28978648   PMID:28981100   PMID:29021395   PMID:29031523   PMID:29054602   PMID:29079187   PMID:29150430  
PMID:29176033   PMID:29180619   PMID:29239838   PMID:29303938   PMID:29328389   PMID:29346117   PMID:29391602   PMID:29417241   PMID:29467282   PMID:29474442   PMID:29499938   PMID:29509190  
PMID:29510136   PMID:29530483   PMID:29580840   PMID:29581427   PMID:29620180   PMID:29651441   PMID:29715456   PMID:29729381   PMID:29739101   PMID:29800921   PMID:29855346   PMID:29893425  
PMID:29901104   PMID:29925658   PMID:29933930   PMID:30018336   PMID:30030262   PMID:30097533   PMID:30131584   PMID:30196744   PMID:30226605   PMID:30280610   PMID:30317461   PMID:30334368  
PMID:30374200   PMID:30410131   PMID:30412483   PMID:30456450   PMID:30463901   PMID:30478987   PMID:30506884   PMID:30543054   PMID:30561431   PMID:30588194   PMID:30655323   PMID:30674474  
PMID:30679801   PMID:30762338   PMID:30842274   PMID:30878028   PMID:30886199   PMID:30887575   PMID:30890647   PMID:30936295   PMID:30945288   PMID:30948266   PMID:30993511   PMID:31048545  
PMID:31081058   PMID:31091453   PMID:31108008   PMID:31113461   PMID:31216116   PMID:31228268   PMID:31230364   PMID:31242951   PMID:31248982   PMID:31318097   PMID:31336247   PMID:31352002  
PMID:31375561   PMID:31440940   PMID:31478661   PMID:31493649   PMID:31527615   PMID:31548239   PMID:31605752   PMID:31629675   PMID:31686315   PMID:31709529   PMID:31774398   PMID:31804622  
PMID:31827061   PMID:31836668   PMID:31867619   PMID:31948748   PMID:31950832   PMID:31980649   PMID:32006593   PMID:32036580   PMID:32037480   PMID:32108380   PMID:32123171   PMID:32181805  
PMID:32260399   PMID:32275681   PMID:32284404   PMID:32292520   PMID:32357246   PMID:32396871   PMID:32416067   PMID:32438712   PMID:32516753   PMID:32552942   PMID:32661180   PMID:32759968  
PMID:32950480   PMID:32985214   PMID:32987855   PMID:33020563   PMID:33096415   PMID:33242255   PMID:33260038   PMID:33387041  


Genomics

Candidate Gene Status
STAT1 is a candidate Gene for QTL BMD6_H
Comparative Map Data
STAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2190,964,358 - 191,020,960 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2190,908,460 - 191,020,960 (-)EnsemblGRCh38hg38GRCh38
GRCh382190,968,989 - 191,014,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372191,833,875 - 191,878,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362191,542,121 - 191,587,181 (-)NCBINCBI36hg18NCBI36
Build 342191,665,769 - 191,704,442NCBI
Celera2185,428,361 - 185,473,577 (-)NCBI
Cytogenetic Map2q32.2NCBI
HuRef2183,693,413 - 183,738,626 (-)NCBIHuRef
CHM1_12191,839,599 - 191,884,801 (-)NCBICHM1_1
Stat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,158,588 - 52,201,024 (+)NCBIGRCm39mm39
GRCm39 Ensembl152,158,599 - 52,201,024 (+)Ensembl
GRCm38152,119,438 - 52,161,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,119,440 - 52,161,865 (+)EnsemblGRCm38mm10GRCm38
MGSCv37152,176,282 - 52,218,707 (+)NCBIGRCm37mm9NCBIm37
MGSCv36152,064,002 - 52,105,508 (+)NCBImm8
Celera152,657,880 - 52,700,334 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.81NCBI
Stat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2949,419,561 - 49,459,969 (-)NCBI
Rnor_6.0 Ensembl954,287,541 - 54,484,533 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0954,287,540 - 54,327,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0953,998,204 - 54,038,463 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4946,455,635 - 46,497,560 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1946,458,584 - 46,495,612 (-)NCBI
Celera947,082,882 - 47,123,002 (-)NCBICelera
Cytogenetic Map9q22NCBI
Stat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554038,156,660 - 8,194,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554038,156,660 - 8,192,018 (+)NCBIChiLan1.0ChiLan1.0
STAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B196,186,906 - 196,232,280 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B196,186,906 - 196,232,280 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B78,270,642 - 78,316,074 (-)NCBIMhudiblu_PPA_v0panPan3
STAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,513,438 - 1,549,837 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,507,219 - 1,550,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,461,622 - 2,502,035 (-)NCBI
ROS_Cfam_1.0371,400,933 - 1,441,368 (-)NCBI
UMICH_Zoey_3.1371,410,525 - 1,450,952 (-)NCBI
UNSW_CanFamBas_1.0371,378,532 - 1,418,954 (-)NCBI
UU_Cfam_GSD_1.0371,407,084 - 1,447,502 (-)NCBI
Stat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024405303149,602,218 - 149,641,217 (-)NCBI
SpeTri2.0NW_0049365067,196,860 - 7,235,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1595,593,211 - 95,646,260 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11595,593,201 - 95,646,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
STAT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11076,492,859 - 76,537,689 (-)NCBI
ChlSab1.1 Ensembl1076,492,533 - 76,533,393 (-)Ensembl
Stat1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248545,067,578 - 5,106,052 (+)NCBI

Position Markers
RH36288  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,840,394 - 191,840,509UniSTSGRCh37
Build 362191,548,639 - 191,548,754RGDNCBI36
Celera2185,434,995 - 185,435,110RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,700,044 - 183,700,159UniSTS
GeneMap99-GB4 RH Map2616.69UniSTS
RH78038  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,834,161 - 191,834,295UniSTSGRCh37
Build 362191,542,406 - 191,542,540RGDNCBI36
Celera2185,428,760 - 185,428,894RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,693,812 - 183,693,946UniSTS
G67903  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,854,173 - 191,854,514UniSTSGRCh37
Build 362191,562,418 - 191,562,759RGDNCBI36
Celera2185,448,775 - 185,449,116RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,713,824 - 183,714,165UniSTS
G67906  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,851,602 - 191,851,933UniSTSGRCh37
Build 362191,559,847 - 191,560,178RGDNCBI36
Celera2185,446,204 - 185,446,535RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,711,253 - 183,711,584UniSTS
G67907  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,851,414 - 191,851,799UniSTSGRCh37
Build 362191,559,659 - 191,560,044RGDNCBI36
Celera2185,446,016 - 185,446,401RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,711,065 - 183,711,450UniSTS
G67904  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,874,528 - 191,874,798UniSTSGRCh37
Build 362191,582,773 - 191,583,043RGDNCBI36
Celera2185,469,131 - 185,469,401RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,734,178 - 183,734,448UniSTS
G67905  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,841,423 - 191,841,810UniSTSGRCh37
Build 362191,549,668 - 191,550,055RGDNCBI36
Celera2185,436,024 - 185,436,411RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,701,073 - 183,701,460UniSTS
G67909  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,839,399 - 191,839,827UniSTSGRCh37
Build 362191,547,644 - 191,548,072RGDNCBI36
Celera2185,434,000 - 185,434,428RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,699,049 - 183,699,477UniSTS
G67911  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,833,832 - 191,835,598UniSTSGRCh37
Build 362191,542,077 - 191,543,843RGDNCBI36
Celera2185,428,431 - 185,430,197RGD
HuRef2183,693,483 - 183,695,249UniSTS
G67908  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,872,155 - 191,872,497UniSTSGRCh37
Build 362191,580,400 - 191,580,742RGDNCBI36
Celera2185,466,757 - 185,467,099RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,731,804 - 183,732,146UniSTS
G67910  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,865,717 - 191,866,045UniSTSGRCh37
Build 362191,573,962 - 191,574,290RGDNCBI36
Celera2185,460,320 - 185,460,648RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,725,367 - 183,725,695UniSTS
G67912  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,864,220 - 191,864,546UniSTSGRCh37
Build 362191,572,465 - 191,572,791RGDNCBI36
Celera2185,458,823 - 185,459,149RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,723,870 - 183,724,196UniSTS
G67913  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,862,822 - 191,863,146UniSTSGRCh37
Build 362191,571,067 - 191,571,391RGDNCBI36
Celera2185,457,425 - 185,457,749RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,722,472 - 183,722,796UniSTS
G67914  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,862,422 - 191,862,841UniSTSGRCh37
Build 362191,570,667 - 191,571,086RGDNCBI36
Celera2185,457,025 - 185,457,444RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,722,072 - 183,722,491UniSTS
STAT1_425  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,833,787 - 191,834,604UniSTSGRCh37
Build 362191,542,032 - 191,542,849RGDNCBI36
Celera2185,428,386 - 185,429,203RGD
HuRef2183,693,438 - 183,694,255UniSTS
STS-N69004  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372191,833,994 - 191,834,209UniSTSGRCh37
Build 362191,542,239 - 191,542,454RGDNCBI36
Celera2185,428,593 - 185,428,808RGD
Cytogenetic Map2q32.2UniSTS
HuRef2183,693,645 - 183,693,860UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR146Ahsa-miR-146a-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)20110513
MIR145hsa-miR-145-5pMirtarbaseexternal_infoqRT-PCR//Luciferase reporter assay//Western blot//Functional MTI20098684

Predicted Target Of
Summary Value
Count of predictions:3168
Count of miRNA genes:1096
Interacting mature miRNAs:1328
Transcripts:ENST00000361099, ENST00000392322, ENST00000392323, ENST00000409465, ENST00000415035, ENST00000423282, ENST00000424722, ENST00000432058, ENST00000452281, ENST00000454414, ENST00000464072, ENST00000540176
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 17 2 8
Medium 2418 2690 1669 574 1859 415 4311 1963 3240 398 1448 1612 175 1 1204 2743 6 2
Low 21 301 57 50 75 50 46 234 494 19 4 1 45
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_008294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_139266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006712718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC067945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH008323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI992149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX354554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY366464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY865620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG699050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU738296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX400908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN410740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR998778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS542449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS542451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA313984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EB385742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU211347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU211348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ284032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC461692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M97935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M97936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000361099   ⟹   ENSP00000354394
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,969,149 - 191,014,171 (-)Ensembl
RefSeq Acc Id: ENST00000392322   ⟹   ENSP00000376136
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,975,537 - 191,014,168 (-)Ensembl
RefSeq Acc Id: ENST00000392323   ⟹   ENSP00000376137
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,975,642 - 191,014,197 (-)Ensembl
RefSeq Acc Id: ENST00000409465   ⟹   ENSP00000386244
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,970,291 - 191,013,955 (-)Ensembl
RefSeq Acc Id: ENST00000415035   ⟹   ENSP00000388240
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,964,352 - 191,014,228 (-)Ensembl
RefSeq Acc Id: ENST00000423282   ⟹   ENSP00000388772
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,969,268 - 191,014,158 (-)Ensembl
RefSeq Acc Id: ENST00000424722   ⟹   ENSP00000402548
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,986,854 - 191,014,161 (-)Ensembl
RefSeq Acc Id: ENST00000432058   ⟹   ENSP00000416019
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2191,009,027 - 191,020,960 (-)Ensembl
RefSeq Acc Id: ENST00000452281   ⟹   ENSP00000394512
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,975,538 - 191,014,228 (-)Ensembl
RefSeq Acc Id: ENST00000454414   ⟹   ENSP00000411398
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2191,001,086 - 191,020,320 (-)Ensembl
RefSeq Acc Id: ENST00000464072
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,978,491 - 190,983,714 (-)Ensembl
RefSeq Acc Id: ENST00000540176   ⟹   ENSP00000438703
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,969,151 - 191,014,231 (-)Ensembl
RefSeq Acc Id: ENST00000673638
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,988,560 - 191,014,161 (-)Ensembl
RefSeq Acc Id: ENST00000673734   ⟹   ENSP00000501040
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,969,318 - 191,014,160 (-)Ensembl
RefSeq Acc Id: ENST00000673762
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2190,969,150 - 190,980,285 (-)Ensembl
RefSeq Acc Id: ENST00000673777   ⟹   ENSP00000500982
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosit