STX2 (syntaxin 2) - Rat Genome Database

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Gene: STX2 (syntaxin 2) Homo sapiens
Analyze
Symbol: STX2
Name: syntaxin 2
RGD ID: 732157
HGNC Page HGNC
Description: Exhibits identical protein binding activity and structural molecule activity. Involved in cellular response to oxidative stress and cornified envelope assembly. Localizes to several cellular components, including basolateral plasma membrane; extracellular space; and lamellipodium.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: EPIM; epimorphin; EPM; MGC51014; STX2A; STX2B; STX2C; syntaxin-2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12130,789,600 - 130,839,266 (-)EnsemblGRCh38hg38GRCh38
GRCh3812130,789,600 - 130,839,274 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712131,274,145 - 131,323,795 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612129,840,098 - 129,889,764 (-)NCBINCBI36hg18NCBI36
Build 3412129,799,028 - 129,848,691NCBI
Celera12130,887,358 - 130,937,200 (-)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12128,256,936 - 128,306,689 (-)NCBIHuRef
CHM1_112131,094,820 - 131,144,677 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:1581962   PMID:7768895   PMID:7791877   PMID:8466509   PMID:8549663   PMID:8619474   PMID:8663154   PMID:8999968   PMID:9045631   PMID:9110174   PMID:9168999   PMID:9177305  
PMID:9425164   PMID:10397765   PMID:10777504   PMID:10820264   PMID:12198139   PMID:12477932   PMID:12651853   PMID:12773094   PMID:12828989   PMID:15146197   PMID:15489334   PMID:15651999  
PMID:15943887   PMID:16339081   PMID:17485553   PMID:18273050   PMID:19129200   PMID:19322201   PMID:21156930   PMID:21720706   PMID:21810271   PMID:21873635   PMID:22045676   PMID:22226963  
PMID:22658674   PMID:22792389   PMID:23219092   PMID:23284306   PMID:23376485   PMID:24039787   PMID:24578379   PMID:24700782   PMID:27362846   PMID:28209294   PMID:29360461   PMID:29570232  
PMID:29767240   PMID:29855462   PMID:32296183   PMID:33075373  


Genomics

Comparative Map Data
STX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12130,789,600 - 130,839,266 (-)EnsemblGRCh38hg38GRCh38
GRCh3812130,789,600 - 130,839,274 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712131,274,145 - 131,323,795 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612129,840,098 - 129,889,764 (-)NCBINCBI36hg18NCBI36
Build 3412129,799,028 - 129,848,691NCBI
Celera12130,887,358 - 130,937,200 (-)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12128,256,936 - 128,306,689 (-)NCBIHuRef
CHM1_112131,094,820 - 131,144,677 (-)NCBICHM1_1
Stx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,061,621 - 129,085,664 (-)NCBIGRCm39mm39
GRCm39 Ensembl5129,061,621 - 129,085,638 (-)Ensembl
GRCm385128,984,557 - 129,008,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5128,984,557 - 129,008,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv375129,490,436 - 129,514,439 (-)NCBIGRCm37mm9NCBIm37
MGSCv365129,299,275 - 129,323,282 (-)NCBImm8
MGSCv365127,256,039 - 127,280,159 (-)NCBImm8
Celera5126,018,075 - 126,042,529 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.99NCBI
Stx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21227,678,744 - 27,714,751 (+)NCBI
Rnor_6.0 Ensembl1231,335,372 - 31,360,254 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01231,324,203 - 31,360,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,250,624 - 33,286,683 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,751,591 - 28,773,351 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11228,614,978 - 28,636,739 (+)NCBI
Celera1229,385,007 - 29,406,766 (+)NCBICelera
RH 3.4 Map12461.4RGD
Cytogenetic Map12q13NCBI
Stx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554821,252,600 - 1,270,913 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554821,249,972 - 1,273,250 (+)NCBIChiLan1.0ChiLan1.0
STX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112132,612,870 - 132,650,554 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12132,614,793 - 132,650,559 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012128,416,793 - 128,464,452 (-)NCBIMhudiblu_PPA_v0panPan3
STX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,459,110 - 1,494,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,454,189 - 1,494,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,649,625 - 1,694,969 (+)NCBI
ROS_Cfam_1.0261,695,058 - 1,740,740 (+)NCBI
UMICH_Zoey_3.1261,631,450 - 1,676,459 (+)NCBI
UNSW_CanFamBas_1.0261,728,343 - 1,773,741 (+)NCBI
UU_Cfam_GSD_1.0261,635,560 - 1,681,133 (+)NCBI
Stx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118123,068,259 - 123,104,309 (+)NCBI
SpeTri2.0NW_0049366601,616,774 - 1,652,585 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1424,341,333 - 24,380,630 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11424,341,473 - 24,380,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21425,870,829 - 25,927,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111126,174,446 - 126,225,342 (-)NCBI
ChlSab1.1 Ensembl11126,178,803 - 126,224,277 (-)Ensembl
Stx2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474727,247,947 - 27,272,698 (-)NCBI

Position Markers
RH121436  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712131,285,451 - 131,285,783UniSTSGRCh37
Build 3612129,851,404 - 129,851,736RGDNCBI36
Celera12130,898,660 - 130,898,992RGD
Cytogenetic Map12q24.33UniSTS
HuRef12128,268,238 - 128,268,570UniSTS
RH68574  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712131,305,454 - 131,305,616UniSTSGRCh37
Build 3612129,871,407 - 129,871,569RGDNCBI36
Celera12130,918,655 - 130,918,817RGD
Cytogenetic Map12q24.33UniSTS
HuRef12128,288,068 - 128,288,230UniSTS
GeneMap99-GB4 RH Map12490.1UniSTS
D6S1152E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712131,274,212 - 131,274,356UniSTSGRCh37
Build 3612129,840,165 - 129,840,309RGDNCBI36
Celera12130,887,425 - 130,887,569RGD
Cytogenetic Map12q24.33UniSTS
HuRef12128,257,003 - 128,257,147UniSTS
GeneMap99-GB4 RH Map12488.07UniSTS
WIAF-2148  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712131,274,295 - 131,274,425UniSTSGRCh37
Build 3612129,840,248 - 129,840,378RGDNCBI36
Celera12130,887,508 - 130,887,638RGD
Cytogenetic Map12q24.33UniSTS
HuRef12128,257,086 - 128,257,216UniSTS
GeneMap99-GB4 RH Map12488.44UniSTS
WI-12272  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712131,274,262 - 131,274,386UniSTSGRCh37
Build 3612129,840,215 - 129,840,339RGDNCBI36
Celera12130,887,475 - 130,887,599RGD
Cytogenetic Map12q24.33UniSTS
HuRef12128,257,053 - 128,257,177UniSTS
GeneMap99-GB4 RH Map12488.65UniSTS
Whitehead-RH Map12620.9UniSTS
D17S610  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map12p12.1-p11.2UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map7q34-q35UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map10q26.13-q26.3UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map10q21.1UniSTS
D1S1423  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map6p22.3-p21.32UniSTS
Cytogenetic Map6q22.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map18q22.1UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map10p14-p13UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map11q23-q24UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map22cen-q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map4q28UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map1q41-q42UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map11q24.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3q13UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map9p21.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq27.2UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map20q11.21-q11.23UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map13q33.3UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p15.1-p14UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map7q32.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21-q24UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map8q24.12UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map6q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map14q22.2UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p22-p21UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q22.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map10q22.3-q23.2UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map3p12.3UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map3q11.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6p24.2UniSTS
Cytogenetic Map20q13.33UniSTS
D7S2067E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p21UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map6p21.1-p11.2UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map5q33.3UniSTS
STS-D14582  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12q24.33UniSTS
GeneMap99-GB4 RH Map7669.77UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2446
Count of miRNA genes:874
Interacting mature miRNAs:1011
Transcripts:ENST00000261653, ENST00000344271, ENST00000392373, ENST00000540889
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1950 1811 1363 213 1065 182 2656 1074 2362 272 1229 1490 43 1195 1549 3
Low 487 1177 363 410 882 283 1700 1123 1371 147 230 123 132 1 9 1239 3 1
Below cutoff 3 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001351049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_194356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD300217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN418753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB474363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC372526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000261653   ⟹   ENSP00000261653
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12130,789,600 - 130,839,266 (-)Ensembl
RefSeq Acc Id: ENST00000344271   ⟹   ENSP00000342554
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12130,801,254 - 130,827,250 (-)Ensembl
RefSeq Acc Id: ENST00000392373   ⟹   ENSP00000376178
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12130,789,600 - 130,839,250 (-)Ensembl
RefSeq Acc Id: ENST00000540889
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12130,798,393 - 130,801,460 (-)Ensembl
RefSeq Acc Id: NM_001351049   ⟹   NP_001337978
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,839,250 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351050   ⟹   NP_001337979
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,798,390 - 130,839,250 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351051   ⟹   NP_001337980
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,839,250 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351052   ⟹   NP_001337981
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,839,250 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001980   ⟹   NP_001971
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,839,250 (-)NCBI
GRCh3712131,274,145 - 131,323,819 (-)NCBI
Build 3612129,840,098 - 129,889,764 (-)NCBI Archive
HuRef12128,256,936 - 128,306,689 (-)NCBI
CHM1_112131,094,820 - 131,144,677 (-)NCBI
Sequence:
RefSeq Acc Id: NM_194356   ⟹   NP_919337
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,839,250 (-)NCBI
GRCh3712131,274,145 - 131,323,819 (-)NCBI
Build 3612129,840,098 - 129,889,764 (-)NCBI Archive
HuRef12128,256,936 - 128,306,689 (-)NCBI
CHM1_112131,094,820 - 131,144,677 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018978   ⟹   XP_016874467
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,834,067 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018979   ⟹   XP_016874468
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,834,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018980   ⟹   XP_016874469
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,834,064 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018981   ⟹   XP_016874470
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,796,439 - 130,834,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018982   ⟹   XP_016874471
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,834,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018983   ⟹   XP_016874472
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,827,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018984   ⟹   XP_016874473
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,789,600 - 130,813,022 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018988   ⟹   XP_016874477
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,801,694 - 130,839,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018989   ⟹   XP_016874478
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,811,765 - 130,834,134 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001971   ⟸   NM_001980
- Peptide Label: isoform 1
- UniProtKB: P32856 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_919337   ⟸   NM_194356
- Peptide Label: isoform 2
- UniProtKB: P32856 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016874471   ⟸   XM_017018982
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_016874468   ⟸   XM_017018979
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016874467   ⟸   XM_017018978
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016874469   ⟸   XM_017018980
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016874472   ⟸   XM_017018983
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016874473   ⟸   XM_017018984
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016874470   ⟸   XM_017018981
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016874477   ⟸   XM_017018988
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_016874478   ⟸   XM_017018989
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: NP_001337978   ⟸   NM_001351049
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001337980   ⟸   NM_001351051
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: NP_001337981   ⟸   NM_001351052
- Peptide Label: isoform 6
- Sequence:
RefSeq Acc Id: NP_001337979   ⟸   NM_001351050
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: ENSP00000376178   ⟸   ENST00000392373
RefSeq Acc Id: ENSP00000261653   ⟸   ENST00000261653
RefSeq Acc Id: ENSP00000342554   ⟸   ENST00000344271
Protein Domains
SynN   t-SNARE coiled-coil homology

Promoters
RGD ID:6789924
Promoter ID:HG_KWN:17048
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000392373,   NM_001980,   NM_194356,   UC001UIQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3612129,889,576 - 129,890,076 (-)MPROMDB
RGD ID:7225859
Promoter ID:EPDNEW_H18674
Type:initiation region
Name:STX2_1
Description:syntaxin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812130,839,250 - 130,839,310EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q24.23-24.33(chr12:118165459-133182322)x3 copy number gain See cases [RCV000050866] Chr12:118165459..133182322 [GRCh38]
Chr12:118603264..133758908 [GRCh37]
Chr12:117087647..132268981 [NCBI36]
Chr12:12q24.23-24.33
pathogenic
GRCh38/hg38 12q24.33(chr12:130648435-130806970)x3 copy number gain See cases [RCV000050684] Chr12:130648435..130806970 [GRCh38]
Chr12:131132980..131291515 [GRCh37]
Chr12:129698933..129857468 [NCBI36]
Chr12:12q24.33
uncertain significance
GRCh38/hg38 12q24.31-24.33(chr12:123444758-133191400)x3 copy number gain See cases [RCV000051151] Chr12:123444758..133191400 [GRCh38]
Chr12:123929305..133767986 [GRCh37]
Chr12:122495258..132278059 [NCBI36]
Chr12:12q24.31-24.33
pathogenic
GRCh38/hg38 12q24.32-24.33(chr12:126403612-133166920)x3 copy number gain See cases [RCV000053715] Chr12:126403612..133166920 [GRCh38]
Chr12:126888158..133743506 [GRCh37]
Chr12:125454111..132253579 [NCBI36]
Chr12:12q24.32-24.33
pathogenic
GRCh38/hg38 12q24.21-24.33(chr12:115131583-133166920)x3 copy number gain See cases [RCV000053689] Chr12:115131583..133166920 [GRCh38]
Chr12:115569388..133743506 [GRCh37]
Chr12:114053771..132253579 [NCBI36]
Chr12:12q24.21-24.33
pathogenic
GRCh38/hg38 12q24.23-24.33(chr12:119417382-133191400)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053691]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053691]|See cases [RCV000053691] Chr12:119417382..133191400 [GRCh38]
Chr12:119855187..133767986 [GRCh37]
Chr12:118339570..132278059 [NCBI36]
Chr12:12q24.23-24.33
pathogenic
GRCh38/hg38 12q24.31-24.33(chr12:123365769-133191400)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053693]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053693]|See cases [RCV000053693] Chr12:123365769..133191400 [GRCh38]
Chr12:123850316..133767986 [GRCh37]
Chr12:122416269..132278059 [NCBI36]
Chr12:12q24.31-24.33
pathogenic
GRCh38/hg38 12q24.31-24.33(chr12:123509825-133191400)x3 copy number gain See cases [RCV000135535] Chr12:123509825..133191400 [GRCh38]
Chr12:123994372..133767986 [GRCh37]
Chr12:122560325..132278059 [NCBI36]
Chr12:12q24.31-24.33
pathogenic
GRCh38/hg38 12q24.31-24.33(chr12:120697672-133202490)x3 copy number gain See cases [RCV000137651] Chr12:120697672..133202490 [GRCh38]
Chr12:121135475..133779076 [GRCh37]
Chr12:119619858..132289149 [NCBI36]
Chr12:12q24.31-24.33
pathogenic
GRCh38/hg38 12q24.33(chr12:130246043-130806970)x3 copy number gain See cases [RCV000137158] Chr12:130246043..130806970 [GRCh38]
Chr12:130730588..131291515 [GRCh37]
Chr12:129296541..129857468 [NCBI36]
Chr12:12q24.33
uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q24.21-24.33(chr12:114268403-133201316)x3 copy number gain See cases [RCV000143656] Chr12:114268403..133201316 [GRCh38]
Chr12:114706208..133777902 [GRCh37]
Chr12:113190591..132287975 [NCBI36]
Chr12:12q24.21-24.33
pathogenic
NC_000012.12:g.130784629G>T single nucleotide variant Lung cancer [RCV000110782] Chr12:130784629 [GRCh38]
Chr12:131269174 [GRCh37]
Chr12:12q24.33
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12q24.33(chr12:130571310-131324619)x3 copy number gain See cases [RCV000510910] Chr12:130571310..131324619 [GRCh37]
Chr12:12q24.33
uncertain significance
GRCh37/hg19 12q24.33(chr12:130973400-133777902)x3 copy number gain not provided [RCV000683469] Chr12:130973400..133777902 [GRCh37]
Chr12:12q24.33
likely pathogenic
GRCh37/hg19 12q24.23-24.33(chr12:120367241-133777645)x3 copy number gain not provided [RCV000738070] Chr12:120367241..133777645 [GRCh37]
Chr12:12q24.23-24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_194356.4(STX2):c.205+9T>C single nucleotide variant not provided [RCV000893684] Chr12:130821680 [GRCh38]
Chr12:131306225 [GRCh37]
Chr12:12q24.33
benign
GRCh37/hg19 12q24.31-24.33(chr12:125451405-133810935) copy number gain not provided [RCV000767827] Chr12:125451405..133810935 [GRCh37]
Chr12:12q24.31-24.33
pathogenic
GRCh37/hg19 12q24.32-24.33(chr12:126470636-133777902)x1 copy number loss not provided [RCV000848702] Chr12:126470636..133777902 [GRCh37]
Chr12:12q24.32-24.33
uncertain significance
NM_194356.4(STX2):c.283A>G (p.Ile95Val) single nucleotide variant not provided [RCV000886616] Chr12:130808702 [GRCh38]
Chr12:131293247 [GRCh37]
Chr12:12q24.33
benign
NM_194356.4(STX2):c.538-4C>T single nucleotide variant not provided [RCV000886716] Chr12:130801294 [GRCh38]
Chr12:131285839 [GRCh37]
Chr12:12q24.33
benign

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:3403 AgrOrtholog
COSMIC STX2 COSMIC
Ensembl Genes ENSG00000111450 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000261653 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000342554 UniProtKB/TrEMBL
  ENSP00000376178 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000261653 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000344271 UniProtKB/TrEMBL
  ENST00000392373 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000111450 GTEx
HGNC ID HGNC:3403 ENTREZGENE
Human Proteome Map STX2 Human Proteome Map
InterPro SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STX2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/Swiss-Prot
  Syntaxin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot
KEGG Report hsa:2054 UniProtKB/Swiss-Prot
NCBI Gene 2054 ENTREZGENE
OMIM 132350 OMIM
PANTHER PTHR19957:SF36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNARE UniProtKB/Swiss-Prot
  Syntaxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA27831 PharmGKB
PROSITE SYNTAXIN UniProtKB/Swiss-Prot
  T_SNARE UniProtKB/Swiss-Prot
SMART SynN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  t_SNARE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A348AY69_HUMAN UniProtKB/TrEMBL
  J3KNU7_HUMAN UniProtKB/TrEMBL
  P32856 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q86VW8 UniProtKB/Swiss-Prot