Crlf3 (cytokine receptor-like factor 3) - Rat Genome Database

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Gene: Crlf3 (cytokine receptor-like factor 3) Mus musculus
Analyze
Symbol: Crlf3
Name: cytokine receptor-like factor 3
RGD ID: 732134
MGI Page MGI
Description: Predicted to enable DNA binding activity and identical protein binding activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; negative regulation of cell growth; and positive regulation of receptor signaling pathway via JAK-STAT. Predicted to be located in cytosol and plasma membrane. Predicted to be active in nucleus. Is expressed in several structures, including genitourinary system; liver; retina; and thymus primordium. Orthologous to human CRLF3 (cytokine receptor like factor 3).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: BB164954; Creme; CREME-9; Creme9; Crlf2; cyto; cytokine receptor related protein 4; cytokine receptor-like factor 2; cytokine receptor-like molecule 9; cytokine receptor-related factor 4; Cytor4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm8856  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,937,319 - 79,971,976 (-)NCBIGRCm39mm39
GRCm39 Ensembl1179,937,319 - 79,971,817 (-)Ensembl
GRCm381180,046,493 - 80,081,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,046,493 - 80,080,991 (-)EnsemblGRCm38mm10GRCm38
MGSCv371179,860,001 - 79,894,457 (-)NCBIGRCm37mm9NCBIm37
MGSCv361179,862,694 - 79,897,152 (-)NCBImm8
Celera1189,682,654 - 89,717,062 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (IBA)
plasma membrane  (ISO)

Molecular Function

References

References - curated
1. MGD data from the GO Consortium
2. RGD automated import pipeline
3. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12696059   PMID:12904583   PMID:14610273   PMID:15226823   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18287559   PMID:18799693   PMID:20562862   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23870131   PMID:24197666   PMID:27626380   PMID:32325033  


Genomics

Comparative Map Data
Crlf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,937,319 - 79,971,976 (-)NCBIGRCm39mm39
GRCm39 Ensembl1179,937,319 - 79,971,817 (-)Ensembl
GRCm381180,046,493 - 80,081,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,046,493 - 80,080,991 (-)EnsemblGRCm38mm10GRCm38
MGSCv371179,860,001 - 79,894,457 (-)NCBIGRCm37mm9NCBIm37
MGSCv361179,862,694 - 79,897,152 (-)NCBImm8
Celera1189,682,654 - 89,717,062 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.43NCBI
CRLF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1730,769,388 - 30,824,692 (-)EnsemblGRCh38hg38GRCh38
GRCh381730,782,684 - 30,824,692 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371729,109,702 - 29,151,710 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361726,133,828 - 26,175,904 (-)NCBINCBI36hg18NCBI36
Build 341726,133,827 - 26,175,817NCBI
Celera1726,031,854 - 26,073,912 (-)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1725,319,439 - 25,362,228 (-)NCBIHuRef
CHM1_11729,172,304 - 29,214,372 (-)NCBICHM1_1
Crlf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21065,024,228 - 65,060,746 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1065,023,388 - 65,060,670 (-)Ensembl
Rnor_6.01067,383,664 - 67,401,836 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,383,900 - 67,401,836 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,041,460 - 67,060,706 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11387,889,612 - 87,889,724 (-)NCBI
Celera1063,990,583 - 64,026,881 (-)NCBICelera
Cytogenetic Map10q25NCBI
Crlf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554816,928,549 - 6,955,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554816,928,549 - 6,955,371 (-)NCBIChiLan1.0ChiLan1.0
CRLF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11725,523,472 - 25,545,460 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1725,523,472 - 25,545,460 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01726,015,224 - 26,057,668 (+)NCBIMhudiblu_PPA_v0panPan3
CRLF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,933,398 - 40,977,819 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,933,417 - 40,989,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha940,092,067 - 40,137,736 (+)NCBI
ROS_Cfam_1.0941,750,324 - 41,796,063 (+)NCBI
UMICH_Zoey_3.1940,535,736 - 40,581,812 (+)NCBI
UNSW_CanFamBas_1.0940,830,568 - 40,875,813 (+)NCBI
UU_Cfam_GSD_1.0940,905,508 - 40,950,991 (+)NCBI
Crlf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,997,165 - 40,039,007 (+)NCBI
SpeTri2.0NW_0049365382,877,564 - 2,916,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRLF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,933,394 - 42,983,158 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,933,417 - 42,991,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,722,179 - 44,777,988 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRLF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,485,440 - 25,533,769 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660754,530,840 - 4,584,224 (+)NCBIVero_WHO_p1.0
Crlf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248754,489,767 - 4,530,794 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
BB164954  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,048,473 - 80,048,582UniSTSGRCm38
MGSCv371179,861,975 - 79,862,084UniSTSGRCm37
Celera1189,684,628 - 89,684,737UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.21UniSTS
Whitehead/MRC_RH111023.12UniSTS
AF046060  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,047,376 - 80,047,461UniSTSGRCm38
MGSCv371179,860,878 - 79,860,963UniSTSGRCm37
Celera1189,683,531 - 89,683,616UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.21UniSTS
Whitehead/MRC_RH111018.66UniSTS
px-31f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map10A3-A4UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B5UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map10C3UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map10B5.1UniSTS
Cytogenetic Map18E4UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map12C2UniSTS
Cytogenetic Map13B2UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map18D3UniSTS
cM Map1060.0UniSTS
cM Map154.6UniSTS
cM Map439.4UniSTS
cM Map1170.0UniSTS
cM Map1336.0UniSTS
cM Map518.2UniSTS
cM Map1229.0UniSTS
cM MapX42.0UniSTS
cM Map1347.01UniSTS
D11Bhm112  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,067,804 - 80,067,962UniSTSGRCm38
MGSCv371179,881,306 - 79,881,464UniSTSGRCm37
Celera1189,703,959 - 89,704,117UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.22UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1234
Count of miRNA genes:526
Interacting mature miRNAs:608
Transcripts:ENSMUST00000061283, ENSMUST00000092858, ENSMUST00000103233, ENSMUST00000147164, ENSMUST00000177825, ENSMUST00000178280, ENSMUST00000178893, ENSMUST00000179855
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF046060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF120152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW986170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000061283   ⟹   ENSMUSP00000060028
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,937,319 - 79,971,817 (-)Ensembl
GRCm38.p6 Ensembl1180,046,493 - 80,080,991 (-)Ensembl
RefSeq Acc Id: ENSMUST00000092858
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,946,921 - 79,971,762 (-)Ensembl
GRCm38.p6 Ensembl1180,056,095 - 80,080,936 (-)Ensembl
RefSeq Acc Id: ENSMUST00000103233   ⟹   ENSMUSP00000099523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,937,319 - 79,971,764 (-)Ensembl
GRCm38.p6 Ensembl1180,046,493 - 80,080,938 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,947,043 - 79,948,725 (-)Ensembl
GRCm38.p6 Ensembl1180,056,217 - 80,057,899 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177825   ⟹   ENSMUSP00000136473
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,938,307 - 79,971,738 (-)Ensembl
GRCm38.p6 Ensembl1180,047,481 - 80,080,912 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178280
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,953,510 - 79,971,764 (-)Ensembl
GRCm38.p6 Ensembl1180,062,684 - 80,080,938 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178893   ⟹   ENSMUSP00000137371
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,938,307 - 79,971,755 (-)Ensembl
GRCm38.p6 Ensembl1180,047,481 - 80,080,929 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179855   ⟹   ENSMUSP00000137124
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1179,950,138 - 79,971,687 (-)Ensembl
GRCm38.p6 Ensembl1180,059,312 - 80,080,861 (-)Ensembl
RefSeq Acc Id: NM_001277106   ⟹   NP_001264035
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391179,937,319 - 79,971,817 (-)NCBI
GRCm381180,046,493 - 80,080,991 (-)NCBI
Celera1189,682,648 - 89,717,098 (-)NCBI
Sequence:
RefSeq Acc Id: NM_018776   ⟹   NP_061246
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391179,937,319 - 79,971,817 (-)NCBI
GRCm381180,046,493 - 80,080,991 (-)NCBI
MGSCv371179,860,001 - 79,894,457 (-)RGD
Celera1189,682,648 - 89,717,098 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_001780029
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391179,937,324 - 79,971,975 (-)NCBI
GRCm381180,046,498 - 80,081,153 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936994
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391179,937,899 - 79,971,976 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_061246   ⟸   NM_018776
- Peptide Label: isoform 1
- UniProtKB: Q9Z2L7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001264035   ⟸   NM_001277106
- Peptide Label: isoform 2
- UniProtKB: Q9Z2L7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137371   ⟸   ENSMUST00000178893
RefSeq Acc Id: ENSMUSP00000136473   ⟸   ENSMUST00000177825
RefSeq Acc Id: ENSMUSP00000137124   ⟸   ENSMUST00000179855
RefSeq Acc Id: ENSMUSP00000060028   ⟸   ENSMUST00000061283
RefSeq Acc Id: ENSMUSP00000099523   ⟸   ENSMUST00000103233
Protein Domains
Fibronectin type-III

Promoters
RGD ID:6820687
Promoter ID:MM_KWN:8790
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:OTTMUST00000000558,   OTTMUST00000000559,   OTTMUST00000000560,   UC007KLE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361179,894,254 - 79,894,754 (-)MPROMDB
RGD ID:8675782
Promoter ID:EPDNEW_M15922
Type:initiation region
Name:Crlf3_1
Description:Mus musculus cytokine receptor-like factor 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,080,942 - 80,081,002EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860086 AgrOrtholog
Ensembl Genes ENSMUSG00000017561 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000060028 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099523 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000136473 UniProtKB/TrEMBL
  ENSMUSP00000137124 UniProtKB/TrEMBL
  ENSMUSP00000137371 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061283 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000103233 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000177825 UniProtKB/TrEMBL
  ENSMUST00000178893 UniProtKB/TrEMBL
  ENSMUST00000179855 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
KEGG Report mmu:54394 UniProtKB/Swiss-Prot
MGD MGI:1860086 ENTREZGENE
NCBI Gene 54394 ENTREZGENE
PhenoGen Crlf3 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot
UniProt CRLF3_MOUSE UniProtKB/Swiss-Prot
  J3QMV5_MOUSE UniProtKB/TrEMBL
  J3QP70_MOUSE UniProtKB/TrEMBL
  J3QPM4_MOUSE UniProtKB/TrEMBL
  Q9Z2L7 ENTREZGENE
UniProt Secondary Q5SYK6 UniProtKB/Swiss-Prot
  Q91W21 UniProtKB/Swiss-Prot
  Q9R262 UniProtKB/Swiss-Prot