Vamp5 (vesicle-associated membrane protein 5) - Rat Genome Database
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Gene: Vamp5 (vesicle-associated membrane protein 5) Mus musculus
Analyze
Symbol: Vamp5
Name: vesicle-associated membrane protein 5
RGD ID: 732080
MGI Page MGI
Description: Orthologous to human VAMP5 (vesicle associated membrane protein 5); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AF119384; Ca; Camp; myobrevin; VAMP-5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,345,032 - 72,357,451 (-)NCBIGRCm39mm39
GRCm39 Ensembl672,345,777 - 72,357,451 (-)Ensembl
GRCm38672,368,049 - 72,380,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,368,794 - 72,380,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,318,043 - 72,330,462 (-)NCBIGRCm37mm9NCBIm37
MGSCv36672,298,537 - 72,309,901 (-)NCBImm8
Celera674,458,535 - 74,470,793 (-)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:20582536   PMID:21267068   PMID:21873635   PMID:23180306   PMID:29330887   PMID:32325033  


Genomics

Comparative Map Data
Vamp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,345,032 - 72,357,451 (-)NCBIGRCm39mm39
GRCm39 Ensembl672,345,777 - 72,357,451 (-)Ensembl
GRCm38672,368,049 - 72,380,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,368,794 - 72,380,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,318,043 - 72,330,462 (-)NCBIGRCm37mm9NCBIm37
MGSCv36672,298,537 - 72,309,901 (-)NCBImm8
Celera674,458,535 - 74,470,793 (-)NCBICelera
Cytogenetic Map6C1NCBI
VAMP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,584,431 - 85,593,406 (+)EnsemblGRCh38hg38GRCh38
GRCh38285,584,431 - 85,593,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,811,554 - 85,820,529 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,665,042 - 85,674,022 (+)NCBINCBI36hg18NCBI36
Build 34285,723,188 - 85,732,169NCBI
Celera285,639,815 - 85,648,795 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,708,672 - 85,717,650 (+)NCBIHuRef
CHM1_1285,741,337 - 85,750,317 (+)NCBICHM1_1
Vamp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,423,813 - 104,435,059 (-)NCBI
Rnor_6.0 Ensembl4100,231,561 - 100,232,559 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04100,231,561 - 100,232,560 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04165,002,320 - 165,003,319 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,673,889 - 105,674,892 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,918,369 - 105,919,371 (-)NCBI
Celera493,578,068 - 93,579,067 (-)NCBICelera
Cytogenetic Map4q31NCBI
Vamp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,911,711 - 1,912,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,911,711 - 1,912,865 (-)NCBIChiLan1.0ChiLan1.0
VAMP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,187,569 - 87,196,530 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,187,569 - 87,196,532 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,634,555 - 85,646,120 (+)NCBIMhudiblu_PPA_v0panPan3
VAMP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1739,488,938 - 39,495,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11739,488,877 - 39,495,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Vamp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,679,276 - 1,686,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,175,872 - 59,185,639 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,177,460 - 59,185,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,238,570 - 62,246,620 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VAMP5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,563,300 - 21,572,651 (-)NCBI
Vamp5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,546,713 - 17,556,045 (-)NCBI

Position Markers
UniSTS:490526  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,368,129 - 72,368,571UniSTSGRCm38
MGSCv37672,318,123 - 72,318,565UniSTSGRCm37
Cytogenetic Map6C1UniSTS
UniSTS:494235  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,368,049 - 72,368,633UniSTSGRCm38
MGSCv37672,318,043 - 72,318,627UniSTSGRCm37
Cytogenetic Map6C1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:920
Count of miRNA genes:304
Interacting mature miRNAs:350
Transcripts:ENSMUST00000074231, ENSMUST00000101285
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000074231   ⟹   ENSMUSP00000073852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,369,034 - 72,380,468 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101285   ⟹   ENSMUSP00000098843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,369,028 - 72,380,422 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206154   ⟹   ENSMUSP00000145880
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,368,794 - 72,372,135 (-)Ensembl
RefSeq Acc Id: NM_001080742   ⟹   NP_001074211
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,345,032 - 72,357,451 (-)NCBI
GRCm38672,368,049 - 72,380,468 (-)ENTREZGENE
MGSCv37672,318,043 - 72,330,462 (-)RGD
Celera674,458,535 - 74,470,793 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016872   ⟹   NP_058568
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,345,032 - 72,357,451 (-)NCBI
GRCm38672,368,049 - 72,380,468 (-)ENTREZGENE
MGSCv37672,318,043 - 72,330,462 (-)RGD
Celera674,458,535 - 74,470,793 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001074211   ⟸   NM_001080742
- UniProtKB: Q9Z2P8 (UniProtKB/Swiss-Prot),   Q791P0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_058568   ⟸   NM_016872
- UniProtKB: Q9Z2P8 (UniProtKB/Swiss-Prot),   Q5M9K2 (UniProtKB/TrEMBL),   Q791P0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145880   ⟸   ENSMUST00000206154
RefSeq Acc Id: ENSMUSP00000073852   ⟸   ENSMUST00000074231
RefSeq Acc Id: ENSMUSP00000098843   ⟸   ENSMUST00000101285
Promoters
RGD ID:6840141
Promoter ID:MM_KWN:46460
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_001080742,   NM_016872
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,330,144 - 72,330,644 (-)MPROMDB
RGD ID:6890014
Promoter ID:EPDNEW_M8458
Type:initiation region
Name:Vamp5_1
Description:Mus musculus vesicle-associated membrane protein 5 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,380,433 - 72,380,493EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858622 AgrOrtholog
Ensembl Genes ENSMUSG00000055545
  ENSMUSG00000073002 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000102671 UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000073852 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098843 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141824 UniProtKB/Swiss-Prot
  ENSMUSP00000141851 UniProtKB/Swiss-Prot
  ENSMUSP00000145880 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000074231 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101285 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000192869 UniProtKB/Swiss-Prot
  ENSMUST00000195019 UniProtKB/Swiss-Prot
  ENSMUST00000206154 UniProtKB/TrEMBL
InterPro Synaptobrevin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptobrevin/VAMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vamp5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VAMP5_R-SNARE UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report mmu:53620 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1858622 ENTREZGENE
NCBI Gene 53620 ENTREZGENE
PANTHER PTHR47462 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Synaptobrevin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vamp5 PhenoGen
PIRSF Synaptobrevin_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS SYNAPTOBREVN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SYNAPTOBREVIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RP87_MOUSE UniProtKB/TrEMBL
  Q3UM44_MOUSE UniProtKB/TrEMBL
  Q5M9K2 ENTREZGENE, UniProtKB/TrEMBL
  Q791P0 ENTREZGENE, UniProtKB/TrEMBL
  Q9WU73_MOUSE UniProtKB/TrEMBL
  Q9Z2P8 ENTREZGENE, UniProtKB/Swiss-Prot